Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012706

Physical Location & Seq

Genomic Coordinates Forward (+)

68252634 .. 68254263

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTTCTGTTCCGCAAGCTGCCTGCTCTCTTCCTCCGTCTCCCAGATCTCCCAGCCTCAGCGTGTTCTTTCCATGCAAAATTCAAGTTCTTCTTACTCGACTCCAGTCCACTTCTGAGTCTTTCTTGCCAGCCGACTGCCGACGCCGCTTCATTCGGTCCAAAGTTTGACGACAATCACACTTTCTACTGGGATGCTTCTTCGGGCTCTGGTGATGATGCACACTTGCTAGATGGAAACAAGCATCAGTCTGGGATACCATCAAATTCAGGGCGTAGAAAGAGAAGTCGCAAGGCTACAGGTGATGCTATAGTGGATGCTATGCTAGAAATAGCTGCCGCTTCAAAAATGAGGGCGACTGCAATCATGAAGAACGAGGACCGGTTTTCTATAAGCAAATGCATAAAGGTATTAGATGAGATGCTAGGCATCGATCAGCAGGTGTACTTTCTTGCATTGGATCTATTTGAGAATGCTAATGCGAGAGAAACATTCATCTCTCTTAAAAGTGACAAGCGATTACTGTGGTTGCAGCGCAAGTTTAGTGCTTCCTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.77

Weight (kDa)

9.01

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10890 AT4G10890 AT4G10890
fragaria_vesca	FvH4_6g48771
rosa_chinensis	RchiOBHm_Chr1g0313081 RchiOBHm_Chr5g0008231
rosa_laevigata	RLG00000030825 RLG00000031551
rosa_multiflora	Rmu_sc0001387.1_g000001 Rmu_sc0001626.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068240 Rroxscaffold_4G00320700 Rroxscaffold_5G00335140
rosa_rugosa	Rorug04G0434600 RorugPtG0000200
rosa_samantha	Rh1CG002000 Rh1CG005000
rosa_wichuraiana	Rw5G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AciI	CCGC	3 cut(s)	16, 150, 342
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	83, 268
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	449
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	88, 348
AluBI	AGCT	2 cut(s)	22, 338
AluI	AGCT	2 cut(s)	22, 338
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	22, 338, 535
ApoI	RAATTY	2 cut(s)	83, 268
AsiGI	ACCGGT	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	161, 382
AsuHPI	GGTGA	2 cut(s)	227, 317
AvaII	GGWCC	2 cut(s)	161, 382
BanII	GRGCYC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	9, 325, 547
BccI	CCATC	2 cut(s)	230, 271
BciVI	GTATCC	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	3 cut(s)	233, 329, 428
BfmI	CTRYAG	2 cut(s)	300, 312
BfuAI	ACCTGC	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	252
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	5 cut(s)	23, 150, 339, 342, 536
BlsI	GCNGC	5 cut(s)	24, 151, 340, 343, 537
Bme18I	GGWCC	2 cut(s)	161, 382
BmgT120I	GGNCC	2 cut(s)	161, 382
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	7 cut(s)	187, 211, 256, 298, 310, 414, 441
BmuI	ACTGGG	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	384
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	108, 197
BseCI	ATCGAT	1 cut(s)	435
BseGI	GGATG	2 cut(s)	202, 325
BseMII	CTCAG	2 cut(s)	75, 110
BseNI	ACTGG	2 cut(s)	108, 197
BseXI	GCAGC	3 cut(s)	9, 325, 547
BseYI	CCCAGC	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	49, 436, 463
BspACI	CCGC	3 cut(s)	16, 150, 342
BspCNI	CTCAG	2 cut(s)	74, 111
BspDI	ATCGAT	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	108, 197
BssAI	RCCGGY	1 cut(s)	384
BssMI	GATC	3 cut(s)	49, 436, 463
BssNI	GRCGYC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	2 cut(s)	12, 38
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	20, 27, 134
BstDEI	CTNAG	2 cut(s)	61, 119
BstF5I	GGATG	2 cut(s)	202, 325
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	3 cut(s)	52, 439, 466
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	49, 436, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	300, 312
BstV1I	GCAGC	3 cut(s)	9, 325, 547
BstX2I	RGATCY	2 cut(s)	49, 463
BstYI	RGATCY	2 cut(s)	49, 463
Bsu15I	ATCGAT	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	202, 325
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	20, 27, 134
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	161, 382
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	384
CviAII	CATG	2 cut(s)	77, 370
CviJI	RGCY	7 cut(s)	5, 22, 59, 136, 210, 299, 338
CviKI_1	RGCY	7 cut(s)	5, 22, 59, 136, 210, 299, 338
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	61, 119
DpnI	GATC	3 cut(s)	51, 438, 465
DpnII	GATC	3 cut(s)	49, 436, 463
Eam1104I	CTCTTC	2 cut(s)	12, 38
EarI	CTCTTC	2 cut(s)	12, 38
Eco24I	GRGCYC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	161, 382
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	80, 373
FaiI	YATR	6 cut(s)	78, 314, 326, 371, 395, 407
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	2 cut(s)	76, 369
Fnu4HI	GCNGC	5 cut(s)	23, 150, 339, 342, 536
FokI	GGATG	2 cut(s)	209, 332
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	23, 150, 339, 342, 536
FspBI	CTAG	3 cut(s)	233, 329, 428
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	5 cut(s)	23, 150, 339, 342, 536
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	91
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	80, 373
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	104, 121
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	227, 317
Hpy166II	GTNNAC	2 cut(s)	113, 448
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	113, 448
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	80, 224, 365, 405, 458, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	61, 119
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	80, 373
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	49, 436, 463
LguI	GCTCTTC	1 cut(s)	12
Lsp1109I	GCAGC	3 cut(s)	9, 325, 547
LweI	GCATC	7 cut(s)	187, 211, 256, 298, 310, 414, 441
MaeI	CTAG	3 cut(s)	233, 329, 428
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	3 cut(s)	51, 438, 465
MboI	GATC	3 cut(s)	49, 436, 463
MboII	GAAGA	4 cut(s)	25, 85, 195, 385
MflI	RGATCY	2 cut(s)	49, 463
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	3 cut(s)	83, 268, 559
MlyI	GAGTC	2 cut(s)	98, 130
MnlI	CCTC	4 cut(s)	47, 70, 348, 373
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	1 cut(s)	507
MspI	CCGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	3 cut(s)	49, 436, 463
NlaIII	CATG	2 cut(s)	80, 373
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	1 cut(s)	407
PagI	TCATGA	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	481
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	5 cut(s)	24, 151, 340, 343, 537
PleI	GAGTC	2 cut(s)	98, 129
PpsI	GAGTC	2 cut(s)	98, 129
PshAI	GACNNNNGTC	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	161, 382
PsuI	RGATCY	2 cut(s)	49, 463
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	23, 150, 339, 342, 536
Sau3AI	GATC	3 cut(s)	49, 436, 463
Sau96I	GGNCC	2 cut(s)	161, 382
SchI	GAGTC	2 cut(s)	98, 130
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	24, 307, 340, 414, 447
SfaNI	GCATC	7 cut(s)	187, 211, 256, 298, 310, 414, 441
SfcI	CTRYAG	2 cut(s)	300, 312
SinI	GGWCC	2 cut(s)	161, 382
Sse9I	AATT	3 cut(s)	83, 268, 559
SsiI	CCGC	3 cut(s)	16, 150, 342
SspMI	CTAG	3 cut(s)	233, 329, 428
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	2 cut(s)	102, 435
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	3 cut(s)	83, 268, 559
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	2 cut(s)	152, 344
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	22, 338, 535
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	144, 386, 487
TspGWI	ACGGA	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	161, 382
XapI	RAATTY	2 cut(s)	83, 268
XspI	CTAG	3 cut(s)	233, 329, 428
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.