Rorug04G0434600
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012706
Physical Location & Seq
Reverse (-)
59266678 .. 59267673
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0434600.1

Sequence Viewer

Length: 996 bp
ATGCCCTCTCCACCGTCCGATCCTCCATCCACACCCGATCTGAGCTCTCCGACCCCCTCCGCTCCCCTCCGCTCCATCACCGCCCTCAGTCTCCAGCTCTTCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCCGCTTCTCCAAGAAGCTCCTCGACCTCGCCGCCGACCCCGAGAAGATCGATCTCGCCAAGGCCGCCCAGCTGCATTGGGCGGCAGAGAAAATGGCTGCTGTGAGAGTGAGACCACAAGGCTCGTGTTCGATGGTCTTATCGGAGCCATTACACTGCTGCTACAAGTTCAGAGGTGGTGCTACAACGACGCCTTGCTCAGTTTCTTTTGCTTCAAAGTTTCAATCTTTATGTTGCAAATCACAGTTGCTGGGGAAATCGAATTCCAGAGGTGGGTTTTCCCGGATTGATGTTGTTTCGGGCGGTGAGCTGATCAAGAGGTTCGATGAGAATGGGAATTGCGAGGATGCGATAGTGGTTTATGTTAAAATGCTTCAACTTGGTTTGCCTGAAGCTGAGGAATTTCAGTTCTTTCCGATTTTGATTAAGGCCTTTGGGGGGTTCTGTGATGTGGGCAAGGCTAGGGAGATTCATGGGCATGTGTTGAAATTGGGGGTTTTGGGCGATGTTTACGATGCCAATTCGATTTTGGGGGTTTATTGGAAATGTGGGGAGGTTGAGGATGCGGTTCAGATGTTTGAGAAAATGCCCGAGAGGGATTTGGTGTCTTGGAATACAATGATATCTGGGTTTTGCCATTCAGGGGATTATGTGAGCTCGTTGGGGATGTTTAGTCGGATGGTTCGGGGGGATCATTGGGTGTTGCCTAATCGGGTGGCTTGCCTTTCGGCTCTCACTTTGTGCTATTCCGTTCAGTCTTTGGTTCATGGCAGAGAGATTCATGGCTTTGCTGTGAAGCGCTGGCCACCTCCGTGCGGCCAGGAGAGAGGGAGAGAGGGAGGGAGAGAGAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

331

Amino Acids

36.36

Weight (kDa)

7.93

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 248 - 275 4.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 62, 72
AclWI GGATC 2 cut(s) 14, 837
AcoI YGGCCR 2 cut(s) 941, 955
AcsI RAATTY 2 cut(s) 400, 539
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 879
AfeI AGCGCT 1 cut(s) 938
AfiI CCNNNNNNNGG 4 cut(s) 411, 576, 781, 953
AgsI TTSAA 5 cut(s) 103, 354, 362, 515, 625
AjnI CCWGG 1 cut(s) 957
AleI CACNNNNGTG 1 cut(s) 949
AloI GAACNNNNNNTCC 2 cut(s) 530, 562
AluBI AGCT 8 cut(s) 45, 97, 124, 157, 211, 448, 533, 795
AluI AGCT 8 cut(s) 45, 97, 124, 157, 211, 448, 533, 795
Alw21I GWGCWC 3 cut(s) 47, 126, 797
Alw26I GTCTC 2 cut(s) 95, 244
AlwI GGATC 2 cut(s) 14, 837
AlwNI CAGNNNCTG 1 cut(s) 388
Ama87I CYCGRG 2 cut(s) 179, 728
Aor51HI AGCGCT 1 cut(s) 938
AoxI GGCC 4 cut(s) 201, 567, 941, 955
ApeKI GCWGC 3 cut(s) 211, 236, 297
ApoI RAATTY 2 cut(s) 400, 539
AspLEI GCGC 1 cut(s) 939
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 70, 455
AvaI CYCGRG 2 cut(s) 179, 728
BalI TGGCCA 1 cut(s) 943
BanII GRGCYC 3 cut(s) 47, 126, 797
BauI CACGAG 1 cut(s) 262
Bbv12I GWGCWC 3 cut(s) 47, 126, 797
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 198, 223, 284
BccI CCATC 4 cut(s) 34, 83, 265, 811
BciT130I CCWGG 1 cut(s) 959
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 95, 244
BfaI CTAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 940
BisI GCNGC 7 cut(s) 171, 204, 212, 222, 237, 298, 955
BlsI GCNGC 7 cut(s) 172, 205, 213, 223, 238, 299, 956
Bme1390I CCNGG 2 cut(s) 421, 959
BmeT110I CYCGRG 2 cut(s) 179, 728
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 421, 959
BmsI GCATC 3 cut(s) 475, 643, 691
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 421
Bsa29I ATCGAT 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 411, 576, 781, 953
BseBI CCWGG 1 cut(s) 959
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 5 cut(s) 26, 490, 706, 810, 822
BseLI CCNNNNNNNGG 4 cut(s) 411, 576, 781, 953
BseMII CTCAG 4 cut(s) 32, 100, 351, 525
BseRI GAGGAG 2 cut(s) 116, 149
BseXI GCAGC 3 cut(s) 198, 223, 284
BseYI CCCAGC 2 cut(s) 207, 388
BshFI GGCC 4 cut(s) 203, 569, 943, 957
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 3 cut(s) 47, 126, 797
BsiHKCI CYCGRG 2 cut(s) 179, 728
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 4 cut(s) 411, 576, 781, 953
BsmAI GTCTC 2 cut(s) 95, 244
BsnI GGCC 4 cut(s) 203, 569, 943, 957
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 2 cut(s) 179, 728
Bsp1286I GDGCHC 3 cut(s) 47, 126, 797
Bsp143I GATC 6 cut(s) 19, 37, 186, 190, 450, 829
BspANI GGCC 4 cut(s) 203, 569, 943, 957
BspCNI CTCAG 4 cut(s) 33, 99, 350, 526
BspDI ATCGAT 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 14, 837
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 244
BsrBI CCGCTC 2 cut(s) 62, 72
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 6 cut(s) 19, 37, 186, 190, 450, 829
BssNI GRCGYC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 2 cut(s) 15, 384
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 859, 941
BstDEI CTNAG 4 cut(s) 41, 86, 337, 534
BstF5I GGATG 5 cut(s) 26, 490, 706, 810, 822
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 6 cut(s) 22, 40, 189, 193, 453, 832
BstMAI GTCTC 2 cut(s) 95, 244
BstMBI GATC 6 cut(s) 19, 37, 186, 190, 450, 829
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 959
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 419, 957
BstV1I GCAGC 3 cut(s) 198, 223, 284
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 4 cut(s) 203, 569, 943, 957
BsuTUI ATCGAT 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 5 cut(s) 26, 490, 706, 810, 822
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 859, 941
CaiI CAGNNNCTG 1 cut(s) 388
CfoI GCGC 1 cut(s) 939
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 337
CviAII CATG 4 cut(s) 611, 617, 905, 920
DdeI CTNAG 4 cut(s) 41, 86, 337, 534
DpnI GATC 6 cut(s) 21, 39, 188, 192, 452, 831
DpnII GATC 6 cut(s) 19, 37, 186, 190, 450, 829
DraIII CACNNNGTG 1 cut(s) 879
EaeI YGGCCR 2 cut(s) 941, 955
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 3 cut(s) 45, 124, 795
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 3 cut(s) 47, 126, 797
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 762
Eco47III AGCGCT 1 cut(s) 938
Eco53kI GAGCTC 3 cut(s) 45, 124, 795
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 179, 728
EcoICRI GAGCTC 3 cut(s) 45, 124, 795
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 957
EcoRV GATATC 1 cut(s) 762
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 3 cut(s) 47, 126, 797
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 4 cut(s) 614, 620, 908, 923
FaiI YATR 8 cut(s) 370, 501, 612, 618, 789, 906, 921, 994
FatI CATG 4 cut(s) 610, 616, 904, 919
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 7 cut(s) 171, 204, 212, 222, 237, 298, 955
FokI GGATG 5 cut(s) 13, 497, 713, 817, 829
FriOI GRGCYC 3 cut(s) 47, 126, 797
Fsp4HI GCNGC 7 cut(s) 171, 204, 212, 222, 237, 298, 955
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 938
GluI GCNGC 7 cut(s) 171, 204, 212, 222, 237, 298, 955
GsaI CCCAGC 2 cut(s) 211, 392
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 4 cut(s) 203, 569, 943, 957
HapII CCGG 1 cut(s) 421
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 939
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 4 cut(s) 614, 620, 908, 923
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HinfI GANTC 2 cut(s) 607, 916
HpaII CCGG 1 cut(s) 421
HphI GGTGA 2 cut(s) 70, 455
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 9 cut(s) 19, 42, 51, 121, 283, 311, 555, 711, 816
Hpy188III TCNNGA 2 cut(s) 405, 454
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 15, 384
HpyCH4V TGCA 2 cut(s) 214, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 4 cut(s) 41, 86, 337, 534
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 4 cut(s) 614, 620, 908, 923
HspAI GCGC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 6 cut(s) 19, 37, 186, 190, 450, 829
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 5 cut(s) 67, 77, 129, 162, 283
Lsp1109I GCAGC 3 cut(s) 198, 223, 284
LweI GCATC 3 cut(s) 475, 643, 691
MaeI CTAG 1 cut(s) 600
MalI GATC 6 cut(s) 21, 39, 188, 192, 452, 831
MbiI CCGCTC 2 cut(s) 62, 72
MboI GATC 6 cut(s) 19, 37, 186, 190, 450, 829
MboII GAAGA 2 cut(s) 91, 196
MhlI GDGCHC 3 cut(s) 47, 126, 797
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 5 cut(s) 400, 475, 539, 626, 658
MluNI TGGCCA 1 cut(s) 943
MmeI TCCRAC 2 cut(s) 74, 794
Mox20I TGGCCA 1 cut(s) 943
MscI TGGCCA 1 cut(s) 943
MseI TTAA 2 cut(s) 504, 564
MslI CAYNNNNRTG 2 cut(s) 615, 949
Msp20I TGGCCA 1 cut(s) 943
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 2 cut(s) 421, 959
MvaI CCWGG 1 cut(s) 959
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 421
NdeII GATC 6 cut(s) 19, 37, 186, 190, 450, 829
NlaIII CATG 4 cut(s) 614, 620, 908, 923
NlaIV GGNNCC 1 cut(s) 285
NspI RCATGY 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 949
PceI AGGCCT 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 2 cut(s) 607, 916
PfoI TCCNGGA 1 cut(s) 419
PkrI GCNGC 7 cut(s) 172, 205, 213, 223, 238, 299, 956
Psp124BI GAGCTC 3 cut(s) 47, 126, 797
Psp6I CCWGG 1 cut(s) 957
PspFI CCCAGC 2 cut(s) 207, 388
PspGI CCWGG 1 cut(s) 957
PspN4I GGNNCC 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 615, 949
SacI GAGCTC 3 cut(s) 47, 126, 797
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 504, 564
SatI GCNGC 7 cut(s) 171, 204, 212, 222, 237, 298, 955
Sau3AI GATC 6 cut(s) 19, 37, 186, 190, 450, 829
ScrFI CCNGG 2 cut(s) 421, 959
SduI GDGCHC 3 cut(s) 47, 126, 797
SfaNI GCATC 3 cut(s) 475, 643, 691
SmiMI CAYNNNNRTG 2 cut(s) 615, 949
Sse9I AATT 5 cut(s) 400, 475, 539, 626, 658
SseBI AGGCCT 1 cut(s) 569
SspMI CTAG 1 cut(s) 600
SstI GAGCTC 3 cut(s) 47, 126, 797
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 419, 957
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 15, 384
TaqI TCGA 6 cut(s) 162, 189, 269, 398, 462, 662
TasI AATT 5 cut(s) 400, 475, 539, 626, 658
TauI GCSGC 4 cut(s) 173, 206, 224, 957
TfiI GAWTC 2 cut(s) 607, 916
Tru1I TTAA 2 cut(s) 504, 564
Tru9I TTAA 2 cut(s) 504, 564
TscAI CASTG 1 cut(s) 299
TseI GCWGC 3 cut(s) 211, 236, 297
TspDTI ATGAA 3 cut(s) 599, 893, 908
TspGWI ACGGA 2 cut(s) 877, 939
TspRI CASTG 1 cut(s) 299
XapI RAATTY 2 cut(s) 400, 539
XceI RCATGY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.