RorugPtG0000200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000008
OG0012706
Physical Location & Seq
Reverse (-)
364 .. 1574
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
RorugPtG0000200.1

Sequence Viewer

Length: 1062 bp
ATGACTGCAATTTTAGAGAGACGTGAAAGCGAAAGCCTATGGGGTCGCTTTTGTAATTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGCATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGATTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTATCAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

5.12

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Photo_RC PF00124 28 - 327 8.4e-94 Photosynthetic reaction centre protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 239
AccBSI CCGCTC 1 cut(s) 752
AccII CGCG 1 cut(s) 969
AciI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
AclWI GGATC 2 cut(s) 106, 214
AcoI YGGCCR 1 cut(s) 766
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 4 cut(s) 203, 289, 842, 982
AgsI TTSAA 5 cut(s) 541, 796, 886, 907, 1040
AjiI CACGTC 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 9 cut(s) 263, 340, 371, 446, 458, 501, 563, 827, 1031
AluI AGCT 9 cut(s) 263, 340, 371, 446, 458, 501, 563, 827, 1031
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 2 cut(s) 106, 214
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 2 cut(s) 766, 833
ApeKI GCWGC 6 cut(s) 161, 260, 455, 458, 827, 1031
AseI ATTAAT 1 cut(s) 942
Asp700I GAANNNNTTC 1 cut(s) 502
AspLEI GCGC 2 cut(s) 420, 971
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 847
AvaII GGWCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 6 cut(s) 148, 272, 445, 467, 814, 1018
BccI CCATC 3 cut(s) 87, 176, 1054
BclI TGATCA 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 6 cut(s) 521, 599, 663, 789, 1022, 1028
BfmI CTRYAG 4 cut(s) 258, 264, 837, 915
BisI GCNGC 8 cut(s) 162, 261, 297, 456, 459, 750, 828, 1032
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 8 cut(s) 163, 262, 298, 457, 460, 751, 829, 1033
Bme18I GGWCC 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 241, 625
BmsI GCATC 1 cut(s) 855
Bpu1102I GCTNAGC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 422, 976
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 289, 842, 982
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 422, 976
BseGI GGATG 2 cut(s) 98, 573
BseLI CCNNNNNNNGG 4 cut(s) 203, 289, 842, 982
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 555
BseXI GCAGC 6 cut(s) 148, 272, 445, 467, 814, 1018
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 2 cut(s) 768, 835
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 203, 289, 842, 982
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 768, 835
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 5 cut(s) 111, 206, 477, 669, 774
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
BspANI GGCC 2 cut(s) 768, 835
BspCNI CTCAG 1 cut(s) 556
BspFNI CGCG 1 cut(s) 969
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 241, 625
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 2 cut(s) 106, 214
BspT107I GGYRCC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 422, 976
BssMI GATC 5 cut(s) 111, 206, 477, 669, 774
BssT1I CCWWGG 2 cut(s) 422, 976
Bst4CI ACNGT 3 cut(s) 80, 326, 512
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 398, 564, 823
BstEII GGTNACC 1 cut(s) 655
BstENI CCTNNNNNAGG 1 cut(s) 840
BstF5I GGATG 2 cut(s) 98, 573
BstFNI CGCG 1 cut(s) 969
BstHHI GCGC 2 cut(s) 420, 971
BstKTI GATC 5 cut(s) 114, 209, 480, 672, 777
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 5 cut(s) 111, 206, 477, 669, 774
BstMWI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
BstNSI RCATGY 1 cut(s) 598
BstPI GGTNACC 1 cut(s) 655
BstSFI CTRYAG 4 cut(s) 258, 264, 837, 915
BstUI CGCG 1 cut(s) 969
BstV1I GCAGC 6 cut(s) 148, 272, 445, 467, 814, 1018
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 2 cut(s) 768, 835
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 2 cut(s) 98, 573
BtsIMutI CAGTG 2 cut(s) 69, 640
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 546
CfoI GCGC 2 cut(s) 420, 971
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 534
CviAII CATG 5 cut(s) 547, 595, 644, 755, 995
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 3 cut(s) 398, 564, 823
DpnI GATC 5 cut(s) 113, 208, 479, 671, 776
DpnII GATC 5 cut(s) 111, 206, 477, 669, 774
EaeI YGGCCR 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 422, 976
Eco47I GGWCC 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 655
EcoNI CCTNNNNNAGG 1 cut(s) 840
EcoO65I GGTNACC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 422, 976
EcoT22I ATGCAT 2 cut(s) 645, 996
ErhI CCWWGG 2 cut(s) 422, 976
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 5 cut(s) 550, 598, 647, 758, 998
FatI CATG 5 cut(s) 546, 594, 643, 754, 994
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 8 cut(s) 162, 261, 297, 456, 459, 750, 828, 1032
FokI GGATG 2 cut(s) 105, 560
Fsp4HI GCNGC 8 cut(s) 162, 261, 297, 456, 459, 750, 828, 1032
FspBI CTAG 6 cut(s) 521, 599, 663, 789, 1022, 1028
GlaI GCGC 2 cut(s) 419, 970
GluI GCNGC 8 cut(s) 162, 261, 297, 456, 459, 750, 828, 1032
HaeIII GGCC 2 cut(s) 768, 835
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 420, 971
Hin1II CATG 5 cut(s) 550, 598, 647, 758, 998
Hin6I GCGC 2 cut(s) 418, 969
HinP1I GCGC 2 cut(s) 418, 969
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 3 cut(s) 525, 692, 714
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 2 cut(s) 194, 855
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 7 cut(s) 191, 204, 386, 475, 547, 722, 1022
Hpy8I GTNNAC 2 cut(s) 194, 855
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 3 cut(s) 80, 326, 512
HpyCH4IV ACGT 2 cut(s) 22, 1000
HpyCH4V TGCA 9 cut(s) 8, 164, 260, 274, 437, 455, 583, 643, 994
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
HpyF3I CTNAG 3 cut(s) 398, 564, 823
HpySE526I ACGT 2 cut(s) 22, 1000
Hsp92II CATG 5 cut(s) 550, 598, 647, 758, 998
HspAI GCGC 2 cut(s) 418, 969
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 5 cut(s) 111, 206, 477, 669, 774
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 6 cut(s) 148, 272, 445, 467, 814, 1018
LweI GCATC 1 cut(s) 855
MaeI CTAG 6 cut(s) 521, 599, 663, 789, 1022, 1028
MaeII ACGT 2 cut(s) 22, 1000
MaeIII GTNAC 2 cut(s) 655, 707
MalI GATC 5 cut(s) 113, 208, 479, 671, 776
MbiI CCGCTC 1 cut(s) 752
MboI GATC 5 cut(s) 111, 206, 477, 669, 774
MboII GAAGA 3 cut(s) 740, 769, 811
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 8 cut(s) 9, 55, 342, 486, 799, 901, 939, 1012
MnlI CCTC 5 cut(s) 177, 528, 670, 718, 1029
Mph1103I ATGCAT 2 cut(s) 645, 996
MroXI GAANNNNTTC 1 cut(s) 502
MseI TTAA 4 cut(s) 890, 900, 942, 963
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 486
MvnI CGCG 1 cut(s) 969
MwoI GCNNNNNNNGC 4 cut(s) 158, 443, 452, 464
NdeII GATC 5 cut(s) 111, 206, 477, 669, 774
NlaIII CATG 5 cut(s) 550, 598, 647, 758, 998
NlaIV GGNNCC 2 cut(s) 241, 625
NsiI ATGCAT 2 cut(s) 645, 996
NspI RCATGY 1 cut(s) 598
PagI TCATGA 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 502
PfeI GAWTC 3 cut(s) 525, 692, 714
PkrI GCNGC 8 cut(s) 163, 262, 298, 457, 460, 751, 829, 1033
PshBI ATTAAT 1 cut(s) 942
PsiI TTATAA 1 cut(s) 738
PspEI GGTNACC 1 cut(s) 655
PspN4I GGNNCC 2 cut(s) 241, 625
PspPI GGNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 4 cut(s) 890, 900, 942, 963
SatI GCNGC 8 cut(s) 162, 261, 297, 456, 459, 750, 828, 1032
Sau3AI GATC 5 cut(s) 111, 206, 477, 669, 774
Sau96I GGNCC 1 cut(s) 329
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 1 cut(s) 855
SfcI CTRYAG 4 cut(s) 258, 264, 837, 915
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 578
Sse9I AATT 8 cut(s) 9, 55, 342, 486, 799, 901, 939, 1012
SsiI CCGC 6 cut(s) 129, 296, 621, 750, 858, 967
SspI AATATT 1 cut(s) 229
SspMI CTAG 6 cut(s) 521, 599, 663, 789, 1022, 1028
StyI CCWWGG 2 cut(s) 422, 976
TaaI ACNGT 3 cut(s) 80, 326, 512
TaiI ACGT 2 cut(s) 25, 1003
TaqII GACCGA 1 cut(s) 707
TasI AATT 8 cut(s) 9, 55, 342, 486, 799, 901, 939, 1012
TauI GCSGC 2 cut(s) 299, 752
TfiI GAWTC 3 cut(s) 525, 692, 714
Tru1I TTAA 4 cut(s) 890, 900, 942, 963
Tru9I TTAA 4 cut(s) 890, 900, 942, 963
TscAI CASTG 2 cut(s) 76, 640
TseI GCWGC 6 cut(s) 161, 260, 455, 458, 827, 1031
TspDTI ATGAA 6 cut(s) 145, 324, 535, 705, 717, 1011
TspGWI ACGGA 3 cut(s) 234, 292, 395
TspRI CASTG 2 cut(s) 76, 640
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 942
XagI CCTNNNNNAGG 1 cut(s) 840
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 502
XspI CTAG 6 cut(s) 521, 599, 663, 789, 1022, 1028
Zsp2I ATGCAT 2 cut(s) 645, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.