Rroxscaffold_4G00320700
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012706
Physical Location & Seq
Reverse (-)
49556550 .. 49561124
4575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320700.1

Sequence Viewer

Length: 579 bp
ATGATTAACTTACTAGAGAAAAGAGAGCGACAACGAAAAATTTGGGATGCTATCAAGGAGATCTCAAATTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGTTGCTTGATACCAAAACAAAAAAAGATGGATTCTTGAATATGTCTCCTCAAGAGCGATCAAATTGGATATTCCACAACAAATTGTATCCTTGTAGAAAAATGAAAGGGGAGGAAATAGATGGGGAAGAGATAGGGGGAGAAGAAATAGATGAAGAAGAAATTGAAGAGGAATTTTATGAAATTATCAAGTATTTATTGATGACATTTCAGGCAATAATTGTTGTGTTAAGAGAGACTATGAATAAGAACAATGATATTCAAGGCAATGAGAATGAGAATAATGAGGAACATATGGATGATGGGGATCAAGCAGGTTATGATGATAATGAGATTGGAATGGATGAGTATGACATAAAGAATTGGAAAGAAGGAGATGGCGATTTACCTCAACCGATGGATTCCGTAATCGAGTCCGGGTTTGCTCCGATGTTGATCTCGGAAGCAAATGAAGAAGATTTGAATCCGGCTGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

192

Amino Acids

22.24

Weight (kDa)

4.22

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 14 - 60 8e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 3 cut(s) 39, 67, 272
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 5 cut(s) 91, 139, 266, 362, 562
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 150, 329
AlwI GGATC 1 cut(s) 414
ApoI RAATTY 3 cut(s) 39, 67, 272
AsiGI ACCGGT 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 517
BccI CCATC 5 cut(s) 122, 215, 395, 470, 490
BciVI GTATCC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 150, 329
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 404
BfuI GTATCC 1 cut(s) 198
BglII AGATCT 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 119, 135
BpuMI CCSGG 1 cut(s) 517
BsaBI GATNNNNATC 3 cut(s) 405, 533, 561
BsaWI WCCGGW 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 3 cut(s) 405, 533, 561
BseGI GGATG 4 cut(s) 52, 79, 403, 448
BseJI GATNNNNATC 3 cut(s) 405, 533, 561
BseMI GCAATG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 138
BshTI ACCGGT 1 cut(s) 83
BsiSI CCGG 3 cut(s) 84, 516, 566
BsmAI GTCTC 2 cut(s) 150, 329
Bsp143I GATC 4 cut(s) 60, 158, 406, 534
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 4 cut(s) 60, 158, 406, 534
Bst6I CTCTTC 2 cut(s) 222, 261
BstC8I GCNNGC 1 cut(s) 571
BstF5I GGATG 4 cut(s) 52, 79, 403, 448
BstKTI GATC 4 cut(s) 63, 161, 409, 537
BstMAI GTCTC 2 cut(s) 150, 329
BstMBI GATC 4 cut(s) 60, 158, 406, 534
BstSCI CCNGG 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 1 cut(s) 198
BtsCI GGATG 4 cut(s) 52, 79, 403, 448
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 83
CviJI RGCY 3 cut(s) 80, 95, 569
CviKI_1 RGCY 3 cut(s) 80, 95, 569
DpnI GATC 4 cut(s) 62, 160, 408, 536
DpnII GATC 4 cut(s) 60, 158, 406, 534
Eam1104I CTCTTC 2 cut(s) 222, 261
EarI CTCTTC 2 cut(s) 222, 261
FaiI YATR 8 cut(s) 143, 279, 341, 393, 395, 420, 450, 455
FauNDI CATATG 1 cut(s) 393
FokI GGATG 4 cut(s) 59, 86, 410, 455
FspBI CTAG 1 cut(s) 14
HapII CCGG 3 cut(s) 84, 516, 566
HinfI GANTC 4 cut(s) 132, 500, 512, 562
HpaII CCGG 3 cut(s) 84, 516, 566
Hpy188I TCNGA 2 cut(s) 528, 541
Hpy188III TCNNGA 3 cut(s) 98, 136, 152
HpyAV CCTTC 1 cut(s) 464
Kzo9I GATC 4 cut(s) 60, 158, 406, 534
LmnI GCTCC 1 cut(s) 529
LpnPI CCDG 5 cut(s) 97, 296, 399, 529, 555
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 14
MalI GATC 4 cut(s) 62, 160, 408, 536
MboI GATC 4 cut(s) 60, 158, 406, 534
MboII GAAGA 7 cut(s) 239, 254, 266, 269, 278, 563, 566
MflI RGATCY 1 cut(s) 60
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 5 cut(s) 159, 205, 262, 379, 498
MseI TTAA 2 cut(s) 6, 329
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 3 cut(s) 84, 516, 566
MspR9I CCNGG 1 cut(s) 517
NciI CCSGG 1 cut(s) 517
NdeI CATATG 1 cut(s) 393
NdeII GATC 4 cut(s) 60, 158, 406, 534
PfeI GAWTC 3 cut(s) 132, 500, 562
PinAI ACCGGT 1 cut(s) 83
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 6, 329
Sau3AI GATC 4 cut(s) 60, 158, 406, 534
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 517
SetI ASST 3 cut(s) 82, 418, 490
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 98, 150
SmoI CTYRAG 2 cut(s) 98, 150
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 515
TaqI TCGA 1 cut(s) 510
TfiI GAWTC 3 cut(s) 132, 500, 562
Tru1I TTAA 2 cut(s) 6, 329
Tru9I TTAA 2 cut(s) 6, 329
TspDTI ATGAA 6 cut(s) 90, 218, 267, 294, 356, 564
TspGWI ACGGA 1 cut(s) 493
XapI RAATTY 3 cut(s) 39, 67, 272
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.