RLG00000031551
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012706
Physical Location & Seq
Reverse (-)
6094624 .. 6095344
721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031551

Sequence Viewer

Length: 423 bp
ATGGCTCGCAGGACACTCTGCTCCAAAAGCAGTCCTGTCCAGGATCCCATGCTTCTTGAAGTGGTCGATGACAACTGGTTCGGTGGAGGCAGAGAGAACAACAAGATATCTGTGGAGGTGAATCAGAATGGTGTATCAAAAGGAAGTTCTAGCTCAATTCAAAACACTTATGAAAGTCGCATTATACAAAGCCTTGATAAAATCTCCACCAGTTTTGAACGACTTTATAATCTACTAGAGAAAAGAGAAAGGGAGAGACACTATACAGTTTGGGATGCTATCAAGGAGATCCCAAACTTGGATCAAGGTACTCGTTTCACGGCGCTTGATTTGATTGATACCAAAACAAAAAAAGATGCGTTCTTGAAGATGTCCCCTGAAGAACGATTAAATTGGATATTCTACAAGATGCAAGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

141

Amino Acids

16.22

Weight (kDa)

7.81

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 90 - 136 9.3e-27 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AclWI GGATC 4 cut(s) 38, 51, 283, 309
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 59, 161, 218, 367
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 4 cut(s) 38, 51, 283, 309
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 130
BamHI GGATCC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 2 cut(s) 150, 236
BfoI RGCGCY 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 265, 346, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 80, 210
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 80, 210
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 43, 288, 301
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 4 cut(s) 38, 51, 283, 309
BsrI ACTGG 2 cut(s) 80, 210
BssMI GATC 3 cut(s) 43, 288, 301
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 3 cut(s) 46, 291, 304
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 43, 288, 301
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 43, 288
BstYI RGATCY 2 cut(s) 43, 288
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 5, 153, 192
CviKI_1 RGCY 3 cut(s) 5, 153, 192
CviQI GTAC 1 cut(s) 309
DpnI GATC 3 cut(s) 45, 290, 303
DpnII GATC 3 cut(s) 43, 288, 301
Eco32I GATATC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 108
FaeI CATG 1 cut(s) 52
FaiI YATR 6 cut(s) 50, 171, 185, 228, 264, 421
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 48
FokI GGATG 1 cut(s) 287
FspBI CTAG 2 cut(s) 150, 236
GlaI GCGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 326
HhaI GCGC 1 cut(s) 325
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 56, 364
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 43, 288, 301
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 26, 48, 53, 61, 223, 390
LweI GCATC 3 cut(s) 265, 346, 399
MaeI CTAG 2 cut(s) 150, 236
MalI GATC 3 cut(s) 45, 290, 303
MboI GATC 3 cut(s) 43, 288, 301
MboII GAAGA 2 cut(s) 379, 392
MflI RGATCY 2 cut(s) 43, 288
MluCI AATT 2 cut(s) 156, 391
MnlI CCTC 2 cut(s) 80, 109
MseI TTAA 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 3 cut(s) 43, 288, 301
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 39
PsiI TTATAA 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 2 cut(s) 43, 288
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 389
Sau3AI GATC 3 cut(s) 43, 288, 301
ScrFI CCNGG 1 cut(s) 41
SetI ASST 3 cut(s) 120, 155, 310
SfaNI GCATC 3 cut(s) 265, 346, 399
Sse9I AATT 2 cut(s) 156, 391
SspMI CTAG 2 cut(s) 150, 236
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 156, 391
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 186
XspI CTAG 2 cut(s) 150, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.