Rmu_sc0001387.1_g000001
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001387.1
OG0012706
Physical Location & Seq
Reverse (-)
795 .. 1492
698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001387.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atggctcgcagtcctgtccaggatcccatgcttcttgaagtggtcgatgacaactggttcagtggacgcagagagaacaacaagatatctgtggagatgaatcagaatggtgtatcaaaaggaagttctagctcaattgaaaacacttatgaaagtcgcattatacaaagccttgataaaatctccaccagttttgaacgactctataatctactagagaaaagagaaagggagagacaatatacagtttgggatgctatcaaggagatcccaaacttggatcaaggtactcgtttcacggcgcttgatatgattgataccaaaacaaaaaaagatgcgttcttgaagatgtcccctgaagaacgattaaattggatattctacaagatgcaaggagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

133

Amino Acids

15.62

Weight (kDa)

5.6

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 17, 30, 262, 288
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 4 cut(s) 38, 140, 197, 346
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 4 cut(s) 17, 30, 262, 288
AspLEI GCGC 1 cut(s) 304
BamHI GGATCC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 2 cut(s) 129, 215
BfoI RGCGCY 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 3 cut(s) 244, 325, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 59, 189
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 59, 189
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 22, 267, 280
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 4 cut(s) 17, 30, 262, 288
BsrI ACTGG 2 cut(s) 59, 189
BssMI GATC 3 cut(s) 22, 267, 280
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 25, 270, 283
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 3 cut(s) 22, 267, 280
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 22, 267
BstYI RGATCY 2 cut(s) 22, 267
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 304
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 5, 132, 171
CviKI_1 RGCY 3 cut(s) 5, 132, 171
CviQI GTAC 1 cut(s) 288
DpnI GATC 3 cut(s) 24, 269, 282
DpnII GATC 3 cut(s) 22, 267, 280
Eco32I GATATC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 87
FaeI CATG 1 cut(s) 31
FaiI YATR 7 cut(s) 29, 150, 164, 207, 243, 311, 400
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 27
FokI GGATG 1 cut(s) 266
FspBI CTAG 2 cut(s) 129, 215
GlaI GCGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 305
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 304
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 100, 201
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 35, 343
Hpy8I GTNNAC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 391
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 22, 267, 280
LpnPI CCDG 6 cut(s) 5, 27, 32, 40, 202, 369
LweI GCATC 3 cut(s) 244, 325, 378
MaeI CTAG 2 cut(s) 129, 215
MalI GATC 3 cut(s) 24, 269, 282
MboI GATC 3 cut(s) 22, 267, 280
MboII GAAGA 2 cut(s) 358, 371
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 22, 267
MluCI AATT 2 cut(s) 135, 370
MlyI GAGTC 1 cut(s) 195
MseI TTAA 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 20
NdeII GATC 3 cut(s) 22, 267, 280
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 100
PfoI TCCNGGA 1 cut(s) 18
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 22, 267
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 1 cut(s) 368
Sau3AI GATC 3 cut(s) 22, 267, 280
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 20
SetI ASST 2 cut(s) 134, 289
SfaNI GCATC 3 cut(s) 244, 325, 378
Sse9I AATT 2 cut(s) 135, 370
SspMI CTAG 2 cut(s) 129, 215
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 135, 370
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 113, 165
TspRI CASTG 1 cut(s) 67
XspI CTAG 2 cut(s) 129, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.