AT4G10925

SnoaL-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009082
Physical Location & Seq
Reverse (-)
6702713 .. 6704651
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10925.5

Sequence Viewer

Length: 696 bp
ATGCCGTCGACGCCGCTGGCTAACGGTGGTACGCCTCCTATGGGTGGCGGAGAGAGAACGACGGTTACAACTTCCACGGTGGCGGATGATAAGCCTGGAGTTTCGATGATGGAGCAGTTGGTTCCGGAAATTACGACACACGCGCTTAGTTACTTGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTAATGATGATAATGCTTGGAAAGCTCTTTATCACAAGGATTTTACTCTGGAGCAAGATGGTATAACACCAGTCAATGGGTGGAAAGAGTACTATGCAACTACTAGAGCGATTATTAGTGTGAATACGGAATTCTTCACCATCATTAGAGACAGAGCGCTTCAAGCGATGGCTCGGTTGTGGTTGAACTCGGACTATGTCAAGTGTATCCATGCCTCTGGCGAACTCTTCTCCGGGTACAATGAAGTGATACAAAGCTGGCAACTTTGTTTCAATTGGGAACAAGGGTTTGACTTTCAGGTCCACACGGTTCGCACTCGGATACTAACAGACATGGCTTGGGTCACCATGAAGGCATACCTGAACGTGGATGGTGGTCCATTCCTAATAACCAATGTGTTCGAGTTCCACAATGGAAGGTGGCACATGGTTCATCATCACAGCTCAGTGATGCTCATCGATGATCAACAAGTTGTTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

231

Amino Acids

26.25

Weight (kDa)

5.75

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 42 - 82 4.5e-06 F-box-like
SnoaL_3 PF13474 108 - 222 1.7e-26 SnoaL-like domain
DUF4440 PF14534 109 - 213 5.9e-06 Domain of unknown function (DUF4440)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 287
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 3 cut(s) 14, 48, 83
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 31, 302, 449
AfeI AGCGCT 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 41, 44, 201, 287, 577
AgsI TTSAA 3 cut(s) 374, 397, 484
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 4 cut(s) 209, 236, 468, 654
AluI AGCT 4 cut(s) 209, 236, 468, 654
Alw26I GTCTC 2 cut(s) 173, 354
AlwNI CAGNNNCTG 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 145, 370
AspS9I GGNCC 2 cut(s) 511, 587
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 2 cut(s) 340, 547
AvaII GGWCC 2 cut(s) 511, 587
BbvI GCAGC 1 cut(s) 196
BccI CCATC 5 cut(s) 103, 263, 359, 373, 575
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 2 cut(s) 428, 525
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 173, 354
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 371
BfuI GTATCC 2 cut(s) 428, 525
BisI GCNGC 2 cut(s) 14, 210
BlsI GCNGC 2 cut(s) 15, 211
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 96, 445
Bme18I GGWCC 2 cut(s) 511, 587
BmgT120I GGNCC 2 cut(s) 511, 587
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 96, 445
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 159
BpmI CTGGAG 2 cut(s) 117, 281
BpuMI CCSGG 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 665
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 44, 201, 287, 577
Bse1I ACTGG 2 cut(s) 165, 281
Bse8I GATNNNNATC 1 cut(s) 665
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 91, 586
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 5 cut(s) 41, 44, 201, 287, 577
BseMII CTCAG 1 cut(s) 669
BseNI ACTGG 2 cut(s) 165, 281
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 669
BsiSI CCGG 2 cut(s) 125, 444
BslI CCNNNNNNNGG 5 cut(s) 41, 44, 201, 287, 577
BsmAI GTCTC 2 cut(s) 173, 354
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 1 cut(s) 673
BspACI CCGC 3 cut(s) 14, 48, 83
BspCNI CTCAG 1 cut(s) 668
BspDI ATCGAT 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 123
BsrI ACTGG 2 cut(s) 165, 281
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 673
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 4 cut(s) 26, 64, 79, 520
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 18, 470
BstDEI CTNAG 2 cut(s) 146, 655
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 553
BstENI CCTNNNNNAGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 91, 586
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 2 cut(s) 145, 370
BstKTI GATC 1 cut(s) 676
BstMAI GTCTC 2 cut(s) 173, 354
BstMBI GATC 1 cut(s) 673
BstMWI GCNNNNNNNGC 3 cut(s) 10, 233, 374
BstNI CCWGG 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 94, 443
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 428
Bsu15I ATCGAT 1 cut(s) 669
BsuI GTATCC 2 cut(s) 428, 525
BsuTUI ATCGAT 1 cut(s) 669
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 2 cut(s) 91, 586
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 2 cut(s) 18, 470
CaiI CAGNNNCTG 1 cut(s) 171
CfoI GCGC 2 cut(s) 145, 370
Cfr13I GGNCC 2 cut(s) 511, 587
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 30, 301, 448
CviAII CATG 5 cut(s) 184, 422, 544, 559, 637
CviJI RGCY 8 cut(s) 20, 94, 209, 236, 383, 468, 548, 654
CviKI_1 RGCY 8 cut(s) 20, 94, 209, 236, 383, 468, 548, 654
CviQI GTAC 3 cut(s) 30, 301, 448
DdeI CTNAG 2 cut(s) 146, 655
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
EciI GGCGGA 2 cut(s) 63, 98
Eco47I GGWCC 2 cut(s) 511, 587
Eco47III AGCGCT 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 553
EcoNI CCTNNNNNAGG 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 94
FaeI CATG 5 cut(s) 187, 425, 547, 562, 640
FatI CATG 5 cut(s) 183, 421, 543, 558, 636
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 14, 210
FokI GGATG 2 cut(s) 98, 593
Fsp4HI GCNGC 2 cut(s) 14, 210
FspBI CTAG 1 cut(s) 315
GlaI GCGC 2 cut(s) 144, 369
GluI GCNGC 2 cut(s) 14, 210
GsuI CTGGAG 2 cut(s) 117, 281
HaeII RGCGCY 1 cut(s) 371
HapII CCGG 2 cut(s) 125, 444
HgaI GACGC 1 cut(s) 19
HhaI GCGC 2 cut(s) 145, 370
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 5 cut(s) 187, 425, 547, 562, 640
Hin6I GCGC 2 cut(s) 143, 368
HinP1I GCGC 2 cut(s) 143, 368
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HpaII CCGG 2 cut(s) 125, 444
HphI GGTGA 2 cut(s) 340, 547
Hpy166II GTNNAC 2 cut(s) 9, 514
Hpy188I TCNGA 2 cut(s) 403, 531
Hpy188III TCNNGA 2 cut(s) 125, 260
Hpy8I GTNNAC 2 cut(s) 9, 514
Hpy99I CGWCG 3 cut(s) 10, 13, 64
HpyAV CCTTC 2 cut(s) 556, 621
HpyCH4III ACNGT 4 cut(s) 26, 64, 79, 520
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 233, 374
HpyF3I CTNAG 2 cut(s) 146, 655
HpySE526I ACGT 1 cut(s) 576
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 187, 425, 547, 562, 640
HspAI GCGC 2 cut(s) 143, 368
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 1 cut(s) 673
LmnI GCTCC 2 cut(s) 112, 262
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 651
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 3 cut(s) 64, 149, 553
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MboII GAAGA 2 cut(s) 337, 430
MfeI CAATTG 1 cut(s) 484
MluCI AATT 4 cut(s) 129, 190, 341, 484
MnlI CCTC 3 cut(s) 45, 195, 436
MroI TCCGGA 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 125, 444
MspR9I CCNGG 2 cut(s) 96, 445
MunI CAATTG 1 cut(s) 484
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 10, 233, 374
NciI CCSGG 1 cut(s) 445
NdeII GATC 1 cut(s) 673
NlaIII CATG 5 cut(s) 187, 425, 547, 562, 640
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 553
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 2 cut(s) 15, 211
Psp6I CCWGG 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 511, 587
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
PstNI CAGNNNCTG 1 cut(s) 171
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 3 cut(s) 31, 302, 449
RsaNI GTAC 3 cut(s) 30, 301, 448
SalI GTCGAC 1 cut(s) 7
SatI GCNGC 2 cut(s) 14, 210
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 2 cut(s) 511, 587
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 96, 445
SetI ASST 8 cut(s) 211, 238, 470, 513, 573, 579, 632, 656
SfaNI GCATC 1 cut(s) 651
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 2 cut(s) 511, 587
Sse9I AATT 4 cut(s) 129, 190, 341, 484
SsiI CCGC 3 cut(s) 14, 48, 83
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 94, 443
TaaI ACNGT 4 cut(s) 26, 64, 79, 520
TaiI ACGT 1 cut(s) 579
TaqI TCGA 4 cut(s) 8, 104, 612, 669
TasI AATT 4 cut(s) 129, 190, 341, 484
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 16
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 468, 575, 632, 680
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 663
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 511, 587
XagI CCTNNNNNAGG 1 cut(s) 199
XapI RAATTY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.