Rmu_sc0009433.1_g000008

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009433.1
OG0009082
Physical Location & Seq
Reverse (-)
37877 .. 39958
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009433.1_g000008.1.cds

Sequence Viewer

Length: 897 bp
atggagattacttcctttaccctcttctcctcctcctcccaaaccttctttgtagccctcgctttcactctcctctgcctcttcctcgccttcctcaccgtccgatcacgcccctcgaaacccaggcgctcccaatcggacggcggttcctcctccgacgaggacaaaaacaagaagctctgcaattgcttctgtcactctaacggcgccgtttccaattactcggagcccgtggacgcgccgcacttgaacggcgggacggagaagcagacggccgttacggagacagagacgacgggcgcgtcgatgatggagcagttggttccggagattaccacccacgcgctcagctacctggactatccgagcctctgtcggctttcgatgaccaattcgctgatgcgaaaggccgccaatgacgataatgcttggaaagctctgtaccataaggactttacgtcggaacaggatactgtcactccagttaatggttggaaggcttactatgctgctacgagagcagttgtgatggtcaatgttcaattcttcaacttcatcagagataggtcacttcctgaaatgagtcgtttatggctgaatgcagattatgtgaagtgtgttcatccctcaggagaattcttttcagggtataatgctgtagtacagagttggcaactcgcctttaattgggagcaaggagttaactttcaggttcgggatgtgcgtgctcgtgttctgactgacatggcttgggtcaccatgaaaacctatgttggtgatcacctggataccggtccattcagtgtgactaacatctttgagttccataatgggcggtggtacatggtgcatcatcacagctctgtgttggatgaggtagaacaccagaatgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

298

Amino Acids

33.79

Weight (kDa)

5.98

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 488
AccII CGCG 3 cut(s) 239, 302, 344
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 5 cut(s) 144, 242, 255, 411, 835
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 443, 663, 842
AfiI CCNNNNNNNGG 2 cut(s) 488, 687
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 3 cut(s) 250, 542, 550
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 3 cut(s) 122, 354, 783
AluBI AGCT 4 cut(s) 178, 351, 437, 861
AluI AGCT 4 cut(s) 178, 351, 437, 861
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 2 cut(s) 278, 284
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 2 cut(s) 273, 408
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 635
AsiGI ACCGGT 1 cut(s) 791
AspLEI GCGC 5 cut(s) 129, 209, 241, 302, 346
AspS9I GGNCC 1 cut(s) 794
AsuHPI GGTGA 4 cut(s) 88, 748, 773, 788
AvaII GGWCC 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 628
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 231
BauI CACGAG 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 1 cut(s) 496
BccI CCATC 2 cut(s) 304, 523
BceAI ACGGC 6 cut(s) 157, 194, 220, 260, 268, 288
BciT130I CCWGG 3 cut(s) 124, 356, 785
BciVI GTATCC 2 cut(s) 463, 781
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 2 cut(s) 278, 284
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 2 cut(s) 130, 210
BfuI GTATCC 2 cut(s) 463, 781
BisI GCNGC 3 cut(s) 242, 411, 510
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 3 cut(s) 243, 412, 511
Bme1390I CCNGG 3 cut(s) 124, 356, 785
Bme18I GGWCC 1 cut(s) 794
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 4 cut(s) 148, 208, 228, 324
BmrFI CCNGG 3 cut(s) 124, 356, 785
BmsI GCATC 2 cut(s) 390, 859
BpmI CTGGAG 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 122, 231
BsaWI WCCGGW 2 cut(s) 325, 791
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 687
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 482
Bse21I CCTNAGG 1 cut(s) 628
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 3 cut(s) 124, 356, 785
BseDI CCNNGG 2 cut(s) 122, 231
BseGI GGATG 3 cut(s) 622, 724, 877
BseLI CCNNNNNNNGG 2 cut(s) 488, 687
BseMII CTCAG 2 cut(s) 361, 642
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 5 cut(s) 19, 22, 25, 62, 142
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 3 cut(s) 239, 302, 344
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 275, 410
BshNI GGYRCC 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 2 cut(s) 326, 792
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 488, 687
BsmAI GTCTC 2 cut(s) 278, 284
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 2 cut(s) 604, 895
BsnI GGCC 2 cut(s) 275, 410
Bsp1286I GDGCHC 2 cut(s) 231, 730
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 104, 778
Bsp1720I GCTNAGC 1 cut(s) 347
BspACI CCGC 5 cut(s) 144, 242, 255, 411, 835
BspANI GGCC 2 cut(s) 275, 410
BspCNI CTCAG 2 cut(s) 360, 641
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 3 cut(s) 239, 302, 344
BspLI GGNNCC 4 cut(s) 148, 208, 228, 324
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 2 cut(s) 122, 231
BssMI GATC 2 cut(s) 104, 778
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 3 cut(s) 124, 356, 785
Bst4CI ACNGT 2 cut(s) 100, 475
Bst6I CTCTTC 2 cut(s) 29, 86
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 2 cut(s) 347, 628
BstDSI CCRYGG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 3 cut(s) 622, 724, 877
BstFNI CGCG 3 cut(s) 239, 302, 344
BstH2I RGCGCY 2 cut(s) 130, 210
BstHHI GCGC 5 cut(s) 129, 209, 241, 302, 346
BstKTI GATC 2 cut(s) 107, 781
BstMAI GTCTC 2 cut(s) 278, 284
BstMBI GATC 2 cut(s) 104, 778
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 434, 506, 518
BstNI CCWGG 3 cut(s) 124, 356, 785
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 122, 354, 783
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 3 cut(s) 239, 302, 344
BstV1I GCAGC 1 cut(s) 496
BstZI CGGCCG 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 628
BsuI GTATCC 2 cut(s) 463, 781
BsuRI GGCC 2 cut(s) 275, 410
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 622, 724, 877
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 726
CfoI GCGC 5 cut(s) 129, 209, 241, 302, 346
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 794
CseI GACGC 2 cut(s) 245, 291
Csp6I GTAC 3 cut(s) 442, 662, 841
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 3 cut(s) 745, 760, 844
CviQI GTAC 3 cut(s) 442, 662, 841
DdeI CTNAG 2 cut(s) 347, 628
DinI GGCGCC 1 cut(s) 208
DpnI GATC 2 cut(s) 106, 780
DpnII GATC 2 cut(s) 104, 778
DrdI GACNNNNNNGTC 1 cut(s) 301
DriI GACNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 29, 86
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 2 cut(s) 29, 86
EclXI CGGCCG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 794
Eco52I CGGCCG 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 628
Eco91I GGTNACC 1 cut(s) 754
EcoO65I GGTNACC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 122, 354, 783
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 3 cut(s) 748, 763, 847
FaqI GGGAC 1 cut(s) 271
FatI CATG 3 cut(s) 744, 759, 843
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 3 cut(s) 242, 411, 510
FokI GGATG 3 cut(s) 609, 731, 884
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 242, 411, 510
GlaI GCGC 5 cut(s) 128, 208, 240, 301, 345
GluI GCNGC 3 cut(s) 242, 411, 510
GsuI CTGGAG 1 cut(s) 465
HaeII RGCGCY 2 cut(s) 130, 210
HaeIII GGCC 2 cut(s) 275, 410
HapII CCGG 2 cut(s) 326, 792
HgaI GACGC 2 cut(s) 245, 291
HhaI GCGC 5 cut(s) 129, 209, 241, 302, 346
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 3 cut(s) 748, 763, 847
Hin6I GCGC 5 cut(s) 127, 207, 239, 300, 344
HinP1I GCGC 5 cut(s) 127, 207, 239, 300, 344
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 1 cut(s) 583
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 2 cut(s) 326, 792
HphI GGTGA 4 cut(s) 88, 748, 773, 788
Hpy166II GTNNAC 2 cut(s) 235, 703
Hpy188I TCNGA 8 cut(s) 104, 139, 157, 226, 366, 463, 560, 738
Hpy188III TCNNGA 4 cut(s) 326, 575, 630, 716
Hpy8I GTNNAC 2 cut(s) 235, 703
Hpy99I CGWCG 4 cut(s) 161, 298, 307, 463
HpyAV CCTTC 3 cut(s) 55, 100, 490
HpyCH4III ACNGT 2 cut(s) 100, 475
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 183, 602, 850, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 506, 518
HpyF3I CTNAG 2 cut(s) 347, 628
HpySE526I ACGT 1 cut(s) 458
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 748, 763, 847
HspAI GCGC 5 cut(s) 127, 207, 239, 300, 344
KasI GGCGCC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 778
KspAI GTTAAC 1 cut(s) 703
Kzo9I GATC 2 cut(s) 104, 778
LmnI GCTCC 4 cut(s) 134, 226, 313, 691
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 2 cut(s) 390, 859
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 6 cut(s) 194, 277, 475, 567, 754, 805
MalI GATC 2 cut(s) 106, 780
MboI GATC 2 cut(s) 104, 778
MboII GAAGA 3 cut(s) 16, 73, 538
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 231, 730
MluCI AATT 6 cut(s) 184, 217, 391, 542, 635, 685
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 4 cut(s) 180, 441, 473, 849
Mph1103I ATGCAT 1 cut(s) 895
MroI TCCGGA 1 cut(s) 325
MseI TTAA 3 cut(s) 486, 684, 702
MslI CAYNNNNRTG 1 cut(s) 888
MspI CCGG 2 cut(s) 326, 792
MspR9I CCNGG 3 cut(s) 124, 356, 785
MunI CAATTG 1 cut(s) 184
Mva1269I GAATGC 2 cut(s) 604, 895
MvaI CCWGG 3 cut(s) 124, 356, 785
MvnI CGCG 3 cut(s) 239, 302, 344
MwoI GCNNNNNNNGC 3 cut(s) 434, 506, 518
NarI GGCGCC 1 cut(s) 207
NdeII GATC 2 cut(s) 104, 778
NlaIII CATG 3 cut(s) 748, 763, 847
NlaIV GGNNCC 4 cut(s) 148, 208, 228, 324
NmuCI GTSAC 5 cut(s) 194, 475, 567, 754, 805
NsiI ATGCAT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 3 cut(s) 299, 302, 721
PctI GAATGC 2 cut(s) 604, 895
PflMI CCANNNNNTGG 1 cut(s) 488
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 3 cut(s) 243, 412, 511
PleI GAGTC 1 cut(s) 591
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 591
Psp6I CCWGG 3 cut(s) 122, 354, 783
PspEI GGTNACC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 122, 354, 783
PspN4I GGNNCC 4 cut(s) 148, 208, 228, 324
PspPI GGNCC 1 cut(s) 794
RsaI GTAC 3 cut(s) 443, 663, 842
RsaNI GTAC 3 cut(s) 442, 662, 841
RseI CAYNNNNRTG 1 cut(s) 888
SaqAI TTAA 3 cut(s) 486, 684, 702
SatI GCNGC 3 cut(s) 242, 411, 510
Sau3AI GATC 2 cut(s) 104, 778
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 3 cut(s) 124, 356, 785
SduI GDGCHC 2 cut(s) 231, 730
SfaNI GCATC 2 cut(s) 390, 859
SfcI CTRYAG 1 cut(s) 657
SfoI GGCGCC 1 cut(s) 208
SinI GGWCC 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 888
Sse9I AATT 6 cut(s) 184, 217, 391, 542, 635, 685
SsiI CCGC 5 cut(s) 144, 242, 255, 411, 835
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 3 cut(s) 122, 354, 783
TaaI ACNGT 2 cut(s) 100, 475
TaiI ACGT 1 cut(s) 461
TaqI TCGA 3 cut(s) 116, 305, 383
TasI AATT 6 cut(s) 184, 217, 391, 542, 635, 685
TatI WGTACW 1 cut(s) 661
TauI GCSGC 2 cut(s) 244, 413
Tru1I TTAA 3 cut(s) 486, 684, 702
Tru9I TTAA 3 cut(s) 486, 684, 702
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 5 cut(s) 194, 475, 567, 754, 805
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 5 cut(s) 194, 475, 567, 754, 805
TspDTI ATGAA 3 cut(s) 544, 611, 776
TspGWI ACGGA 2 cut(s) 275, 296
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 489
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.