Rh7AG141300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009082
Physical Location & Seq
Reverse (-)
11395509 .. 11397948
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG141300.1

Sequence Viewer

Length: 723 bp
ATGGAGATTACTTCCTTTACCCTCTTCTCCTCCTCCCAAACCTTCTTTGTAGCCCTCGCTTTCACTCTCCTCTGCCTCTTCCTCACCTTCCTCACCGTCCGATCACGCCCCTCGAAACCCAGGCGCTCCCAATCGGACGGCGGTTCCTCTTCCGACGACGACAAAAACAAGAAGCTCTGCAATTGCTTCTGTCACTCTAACGGCGCCGTTTTCAATTACTCGGAACCCGTGGACGCGCCGCACTTGAACGGCGGGACGGAGAAGCAGACGGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTGATGCGAAAGGCCGCCAATGACGATAATGCTTGGAAAGCTCTGTACCATAAGGACTTTACGTCGGAACAGGATACTGTAACTCCAGTTAATGGTTGGAAGGCTTACTATGCTGCTACAAGAGCAGTTGTGATGGTCAATGTTCAATTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCGTTTATGGTTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTATGATTCCTCTTATCTGTGTAAAATTTTCAGAAACTACACATCCACAGATGTTTTCTTCTGTGTAGTTCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

240

Amino Acids

27.14

Weight (kDa)

6.2

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 108 - 148 4.8e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 3 cut(s) 236, 299, 341
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 4 cut(s) 141, 239, 252, 408
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 2 cut(s) 632, 669
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 5 cut(s) 214, 247, 539, 547, 595
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 2 cut(s) 119, 351
AluBI AGCT 3 cut(s) 175, 348, 434
AluI AGCT 3 cut(s) 175, 348, 434
Alw26I GTCTC 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 2 cut(s) 270, 405
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 632, 669
AspLEI GCGC 5 cut(s) 126, 206, 238, 299, 343
AsuHPI GGTGA 2 cut(s) 76, 85
AxyI CCTNAGG 1 cut(s) 625
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 301, 520
BceAI ACGGC 6 cut(s) 154, 191, 217, 257, 265, 285
BciT130I CCWGG 2 cut(s) 121, 353
BciVI GTATCC 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 2 cut(s) 127, 207
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 3 cut(s) 239, 408, 507
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 3 cut(s) 240, 409, 508
Bme1390I CCNGG 2 cut(s) 121, 353
BmeRI GACNNNNNGTC 1 cut(s) 454
BmiI GGNNCC 4 cut(s) 145, 205, 225, 321
BmrFI CCNGG 2 cut(s) 121, 353
BmsI GCATC 1 cut(s) 387
BpmI CTGGAG 2 cut(s) 462, 701
Bpu1102I GCTNAGC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 119, 228
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 479, 718
Bse21I CCTNAGG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 121, 353
BseDI CCNNGG 2 cut(s) 119, 228
BseGI GGATG 2 cut(s) 619, 686
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 358, 639
BseNI ACTGG 2 cut(s) 479, 718
BseRI GAGGAG 3 cut(s) 19, 22, 59
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 3 cut(s) 236, 299, 341
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 272, 407
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 2 cut(s) 272, 407
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 101
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 4 cut(s) 141, 239, 252, 408
BspANI GGCC 2 cut(s) 272, 407
BspCNI CTCAG 2 cut(s) 357, 638
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 3 cut(s) 236, 299, 341
BspLI GGNNCC 4 cut(s) 145, 205, 225, 321
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 479, 718
BssECI CCNNGG 2 cut(s) 119, 228
BssMI GATC 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 121, 353
Bst4CI ACNGT 2 cut(s) 97, 472
Bst6I CTCTTC 3 cut(s) 29, 83, 154
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 344, 625
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 619, 686
BstFNI CGCG 3 cut(s) 236, 299, 341
BstH2I RGCGCY 2 cut(s) 127, 207
BstHHI GCGC 5 cut(s) 126, 206, 238, 299, 343
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 101
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 3 cut(s) 431, 503, 515
BstNI CCWGG 2 cut(s) 121, 353
BstSCI CCNGG 2 cut(s) 119, 351
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 3 cut(s) 236, 299, 341
BstV1I GCAGC 1 cut(s) 493
BstZI CGGCCG 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 2 cut(s) 272, 407
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 619, 686
CfoI GCGC 5 cut(s) 126, 206, 238, 299, 343
CseI GACGC 2 cut(s) 242, 288
Csp6I GTAC 1 cut(s) 439
CviJI RGCY 9 cut(s) 53, 175, 272, 348, 366, 376, 407, 434, 497
CviKI_1 RGCY 9 cut(s) 53, 175, 272, 348, 366, 376, 407, 434, 497
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 2 cut(s) 344, 625
DinI GGCGCC 1 cut(s) 205
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
DrdI GACNNNNNNGTC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 3 cut(s) 29, 83, 154
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 3 cut(s) 29, 83, 154
EclXI CGGCCG 1 cut(s) 270
Eco52I CGGCCG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 119, 351
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 281
FaiI YATR 5 cut(s) 444, 504, 589, 606, 648
FaqI GGGAC 1 cut(s) 268
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 239, 408, 507
FokI GGATG 2 cut(s) 606, 673
Fsp4HI GCNGC 3 cut(s) 239, 408, 507
GlaI GCGC 5 cut(s) 125, 205, 237, 298, 342
GluI GCNGC 3 cut(s) 239, 408, 507
GsuI CTGGAG 2 cut(s) 462, 701
HaeII RGCGCY 2 cut(s) 127, 207
HaeIII GGCC 2 cut(s) 272, 407
HapII CCGG 1 cut(s) 323
HgaI GACGC 2 cut(s) 242, 288
HhaI GCGC 5 cut(s) 126, 206, 238, 299, 343
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 5 cut(s) 124, 204, 236, 297, 341
HinP1I GCGC 5 cut(s) 124, 204, 236, 297, 341
HinfI GANTC 2 cut(s) 580, 650
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 76, 85
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 8 cut(s) 101, 136, 154, 223, 363, 460, 557, 677
Hpy188III TCNNGA 3 cut(s) 323, 572, 627
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 5 cut(s) 158, 161, 295, 304, 460
HpyAV CCTTC 3 cut(s) 52, 97, 487
HpyCH4III ACNGT 2 cut(s) 97, 472
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 180, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 503, 515
HpyF3I CTNAG 2 cut(s) 344, 625
HpySE526I ACGT 1 cut(s) 455
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 5 cut(s) 124, 204, 236, 297, 341
KasI GGCGCC 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 131, 310
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 387
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 4 cut(s) 191, 274, 472, 564
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 5 cut(s) 16, 70, 141, 535, 694
MfeI CAATTG 1 cut(s) 181
MluCI AATT 6 cut(s) 181, 214, 388, 539, 632, 669
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 3 cut(s) 177, 438, 470
MroI TCCGGA 1 cut(s) 322
MseI TTAA 1 cut(s) 483
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 121, 353
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 2 cut(s) 121, 353
MvnI CGCG 3 cut(s) 236, 299, 341
MwoI GCNNNNNNNGC 3 cut(s) 431, 503, 515
NarI GGCGCC 1 cut(s) 204
NdeII GATC 1 cut(s) 101
NlaIV GGNNCC 4 cut(s) 145, 205, 225, 321
NmuCI GTSAC 2 cut(s) 191, 564
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 299
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 650
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 3 cut(s) 240, 409, 508
PleI GAGTC 1 cut(s) 588
PluTI GGCGCC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 119, 351
PspGI CCWGG 2 cut(s) 119, 351
PspN4I GGNNCC 4 cut(s) 145, 205, 225, 321
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 239, 408, 507
Sau3AI GATC 1 cut(s) 101
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 121, 353
SetI ASST 8 cut(s) 44, 89, 177, 350, 354, 436, 458, 566
SfaNI GCATC 1 cut(s) 387
SfcI CTRYAG 1 cut(s) 370
SfoI GGCGCC 1 cut(s) 205
Sse9I AATT 6 cut(s) 181, 214, 388, 539, 632, 669
SsiI CCGC 4 cut(s) 141, 239, 252, 408
SspDI GGCGCC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 119, 351
TaaI ACNGT 2 cut(s) 97, 472
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 113, 302, 380
TasI AATT 6 cut(s) 181, 214, 388, 539, 632, 669
TauI GCSGC 2 cut(s) 241, 410
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseFI GTSAC 2 cut(s) 191, 564
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 191, 564
TspDTI ATGAA 2 cut(s) 541, 608
TspGWI ACGGA 2 cut(s) 272, 293
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 2 cut(s) 632, 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.