MD06G1109700.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009082
Physical Location & Seq
Forward (+)
24923768 .. 24926525
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1109700.v1.1.491

Sequence Viewer

Length: 918 bp
ATGGAGATTATTTCCCTCACTCTCTCTTATCCCCAAACCTTCTTTGTAGCCCTAATTTTTACTTTTCTCACCTTTTTCCTCGCTCTCCTCGCCGTCCGATCACTCCCCGGCAAACCCAAATCGGGCGGCGCTGCCTCTGCCACCTCGTCGTCGAGTGGAAGCGGAAAGGCCTGCACTTGCTGTACTAGTCACCGGGAAGAGGTCGTTTCGGGCTCCGATTCGGGGCCCGTGAGCGCGCCGCACTTGAACGGCGGGACGGATACGGACGTGACGGAGAAGCCGACGGCGGCGGTGGCCGTACTGGAGCGGCATACGGGCGCGTCGATGATGGAGCAGCTGGTTCCGGAGATTACGACGCATGCTCTTAGCTATCTGGACTACCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTCATGCGGAGGGCCGCCAATGATGATAATGCTTGGAAGGCGCTTTATCATAAAGACTTCACCTTGGAACAGGATAGCGTAACCCCAGTTAATGGATGGAAAGCTTACTATGCTGCTACAAGAGCGATTGTGAATGTCAATACTGAATTCTTTAACTTTATCCGAGGAAGGTCACTTCCAGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATGCCTCTGGAGAACTCTTTTCGGGGTACAATGCTGTTATACAGAGTTGGCAACTAGCATTTAATTGGGAGCAAGGGGTTAACTTTCAGATTCGAGATGTGCGTGCGCGGGTTCTAACAGACATGGCCTGGGTTACCATGAAAACCTATGTTGAAATTGACACTGGGCCATTCAATGTGACCAACGTCTATGAGTTCCATAACGGGCGATGGTACATGGTGCATCATCATGGCTCTGTGATGGATGTAGAGGGAGAACAGCAGATTGTGCAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

306

Amino Acids

33.85

Weight (kDa)

5.92

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 115 - 155 3.3e-06 F-box-like
SnoaL_3 PF13474 181 - 294 3.4e-27 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 307
AccII CGCG 3 cut(s) 236, 320, 748
AccIII TCCGGA 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 560
AfaI GTAC 4 cut(s) 184, 300, 668, 854
AfiI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
AgsI TTSAA 3 cut(s) 247, 794, 814
AhlI ACTAGT 1 cut(s) 185
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 767
AluBI AGCT 3 cut(s) 337, 369, 518
AluI AGCT 3 cut(s) 337, 369, 518
Ama87I CYCGRG 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 6 cut(s) 168, 224, 294, 426, 765, 806
ApaI GGGCCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 131, 334, 527
ApoI RAATTY 1 cut(s) 560
AspLEI GCGC 6 cut(s) 131, 236, 238, 320, 457, 748
AspS9I GGNCC 4 cut(s) 224, 225, 426, 806
AsuC2I CCSGG 2 cut(s) 108, 194
AsuHPI GGTGA 3 cut(s) 61, 182, 466
AvaI CYCGRG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 228
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BanII GRGCYC 2 cut(s) 215, 228
BbvI GCAGC 3 cut(s) 118, 346, 514
BccI CCATC 4 cut(s) 322, 504, 843, 874
BceAI ACGGC 4 cut(s) 77, 265, 281, 300
BciT130I CCWGG 1 cut(s) 769
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 2 cut(s) 108, 194
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 2 cut(s) 186, 695
BfmI CTRYAG 1 cut(s) 391
BfoI RGCGCY 2 cut(s) 132, 458
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 8 cut(s) 127, 132, 239, 288, 308, 335, 429, 528
BlsI GCNGC 8 cut(s) 128, 133, 240, 289, 309, 336, 430, 529
Bme1390I CCNGG 3 cut(s) 108, 194, 769
BmeT110I CYCGRG 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 4 cut(s) 224, 225, 426, 806
BmiI GGNNCC 4 cut(s) 214, 225, 226, 342
BmrFI CCNGG 3 cut(s) 108, 194, 769
BmrI ACTGGG 2 cut(s) 494, 813
BmsI GCATC 1 cut(s) 871
BmuI ACTGGG 2 cut(s) 494, 813
BoxI GACNNNNGTC 1 cut(s) 824
BpmI CTGGAG 2 cut(s) 323, 669
BpuMI CCSGG 2 cut(s) 108, 194
BsaJI CCNNGG 4 cut(s) 106, 477, 577, 768
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
Bse1I ACTGG 3 cut(s) 306, 500, 808
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 1 cut(s) 769
BseDI CCNNGG 4 cut(s) 106, 477, 577, 768
BseGI GGATG 2 cut(s) 515, 889
BseLI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
BseNI ACTGG 3 cut(s) 306, 500, 808
BsePI GCGCGC 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 3 cut(s) 118, 346, 514
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 3 cut(s) 236, 320, 748
BshFI GGCC 6 cut(s) 170, 226, 296, 428, 767, 808
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 3 cut(s) 108, 193, 344
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 122, 199, 222, 506
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 6 cut(s) 170, 226, 296, 428, 767, 808
BsoBI CYCGRG 1 cut(s) 382
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 215, 228
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 1 cut(s) 98
BspANI GGCC 6 cut(s) 170, 226, 296, 428, 767, 808
BspEI TCCGGA 1 cut(s) 343
BspFNI CGCG 3 cut(s) 236, 320, 748
BspLI GGNNCC 4 cut(s) 214, 225, 226, 342
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 3 cut(s) 306, 500, 808
BssECI CCNNGG 4 cut(s) 106, 477, 577, 768
BssHII GCGCGC 1 cut(s) 234
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 769
Bst6I CTCTTC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 907
BstC8I GCNNGC 4 cut(s) 172, 236, 360, 744
BstDEI CTNAG 1 cut(s) 365
BstEII GGTNACC 1 cut(s) 772
BstF5I GGATG 2 cut(s) 515, 889
BstFNI CGCG 3 cut(s) 236, 320, 748
BstH2I RGCGCY 2 cut(s) 132, 458
BstHHI GCGC 6 cut(s) 131, 236, 238, 320, 457, 748
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
BstNI CCWGG 1 cut(s) 769
BstNSI RCATGY 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 824
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 106, 192, 767
BstSFI CTRYAG 1 cut(s) 391
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 3 cut(s) 236, 320, 748
BstV1I GCAGC 3 cut(s) 118, 346, 514
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 6 cut(s) 170, 226, 296, 428, 767, 808
BtgZI GCGATG 1 cut(s) 862
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 515, 889
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 4 cut(s) 172, 236, 360, 744
CfoI GCGC 6 cut(s) 131, 236, 238, 320, 457, 748
Cfr13I GGNCC 4 cut(s) 224, 225, 426, 806
CseI GACGC 2 cut(s) 309, 364
Csp6I GTAC 4 cut(s) 183, 299, 667, 853
CviAII CATG 7 cut(s) 359, 418, 641, 763, 778, 856, 869
CviQI GTAC 4 cut(s) 183, 299, 667, 853
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 2 cut(s) 215, 228
Eco88I CYCGRG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 2 cut(s) 215, 228
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 7 cut(s) 362, 421, 644, 766, 781, 859, 872
FaqI GGGAC 1 cut(s) 268
FatI CATG 7 cut(s) 358, 417, 640, 762, 777, 855, 868
FauI CCCGC 2 cut(s) 245, 741
Fnu4HI GCNGC 8 cut(s) 127, 132, 239, 288, 308, 335, 429, 528
FokI GGATG 2 cut(s) 522, 896
FriOI GRGCYC 2 cut(s) 215, 228
Fsp4HI GCNGC 8 cut(s) 127, 132, 239, 288, 308, 335, 429, 528
FspBI CTAG 2 cut(s) 186, 695
GlaI GCGC 6 cut(s) 130, 235, 237, 319, 456, 747
GluI GCNGC 8 cut(s) 127, 132, 239, 288, 308, 335, 429, 528
GsuI CTGGAG 2 cut(s) 323, 669
HaeII RGCGCY 2 cut(s) 132, 458
HaeIII GGCC 6 cut(s) 170, 226, 296, 428, 767, 808
HapII CCGG 3 cut(s) 108, 193, 344
HgaI GACGC 2 cut(s) 309, 364
HhaI GCGC 6 cut(s) 131, 236, 238, 320, 457, 748
Hin1II CATG 7 cut(s) 362, 421, 644, 766, 781, 859, 872
Hin6I GCGC 6 cut(s) 129, 234, 236, 318, 455, 746
HinP1I GCGC 6 cut(s) 129, 234, 236, 318, 455, 746
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 3 cut(s) 218, 601, 730
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 3 cut(s) 108, 193, 344
HphI GGTGA 3 cut(s) 61, 182, 466
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 4 cut(s) 98, 217, 578, 729
Hpy188III TCNNGA 5 cut(s) 344, 374, 593, 648, 734
Hpy8I GTNNAC 1 cut(s) 721
Hpy99I CGWCG 5 cut(s) 151, 154, 286, 325, 358
HpyAV CCTTC 3 cut(s) 49, 445, 576
HpyCH4IV ACGT 2 cut(s) 267, 825
HpyCH4V TGCA 4 cut(s) 174, 620, 862, 910
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 2 cut(s) 267, 825
Hsp92II CATG 7 cut(s) 362, 421, 644, 766, 781, 859, 872
HspAI GCGC 6 cut(s) 129, 234, 236, 318, 455, 746
Kpn2I TCCGGA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 4 cut(s) 218, 304, 331, 709
Lsp1109I GCAGC 3 cut(s) 118, 346, 514
LweI GCATC 1 cut(s) 871
MaeI CTAG 2 cut(s) 186, 695
MaeII ACGT 2 cut(s) 267, 825
MaeIII GTNAC 6 cut(s) 188, 268, 493, 585, 772, 817
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 215, 228
MluCI AATT 5 cut(s) 54, 409, 560, 703, 795
MlyI GAGTC 1 cut(s) 610
MroI TCCGGA 1 cut(s) 343
MseI TTAA 4 cut(s) 504, 567, 702, 720
MslI CAYNNNNRTG 1 cut(s) 867
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 3 cut(s) 108, 193, 344
MspR9I CCNGG 3 cut(s) 108, 194, 769
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 769
MvnI CGCG 3 cut(s) 236, 320, 748
MwoI GCNNNNNNNGC 7 cut(s) 89, 137, 293, 452, 524, 536, 907
NciI CCSGG 2 cut(s) 108, 194
NdeII GATC 1 cut(s) 98
NlaIII CATG 7 cut(s) 362, 421, 644, 766, 781, 859, 872
NlaIV GGNNCC 4 cut(s) 214, 225, 226, 342
NmuCI GTSAC 4 cut(s) 188, 268, 585, 817
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PauI GCGCGC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 278, 320, 739
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 218, 730
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 8 cut(s) 128, 133, 240, 289, 309, 336, 430, 529
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
PshAI GACNNNNGTC 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 767
PspEI GGTNACC 1 cut(s) 772
PspGI CCWGG 1 cut(s) 767
PspN4I GGNNCC 4 cut(s) 214, 225, 226, 342
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 4 cut(s) 224, 225, 426, 806
PteI GCGCGC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 4 cut(s) 184, 300, 668, 854
RsaNI GTAC 4 cut(s) 183, 299, 667, 853
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 4 cut(s) 504, 567, 702, 720
SatI GCNGC 8 cut(s) 127, 132, 239, 288, 308, 335, 429, 528
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 4 cut(s) 224, 225, 426, 806
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 3 cut(s) 108, 194, 769
SduI GDGCHC 2 cut(s) 215, 228
SfaNI GCATC 1 cut(s) 871
SfcI CTRYAG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 867
SpeI ACTAGT 1 cut(s) 185
SphI GCATGC 1 cut(s) 362
Sse9I AATT 5 cut(s) 54, 409, 560, 703, 795
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 2 cut(s) 186, 695
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 3 cut(s) 106, 192, 767
StyI CCWWGG 1 cut(s) 477
TaiI ACGT 2 cut(s) 270, 828
TaqI TCGA 4 cut(s) 152, 323, 401, 733
TasI AATT 5 cut(s) 54, 409, 560, 703, 795
TatI WGTACW 1 cut(s) 182
TauI GCSGC 5 cut(s) 129, 241, 290, 310, 431
TfiI GAWTC 2 cut(s) 218, 730
Tru1I TTAA 4 cut(s) 504, 567, 702, 720
Tru9I TTAA 4 cut(s) 504, 567, 702, 720
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 4 cut(s) 188, 268, 585, 817
TseI GCWGC 3 cut(s) 131, 334, 527
Tsp45I GTSAC 4 cut(s) 188, 268, 585, 817
TspDTI ATGAA 2 cut(s) 629, 794
TspGWI ACGGA 3 cut(s) 272, 278, 287
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 506
XapI RAATTY 1 cut(s) 560
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 507
XspI CTAG 2 cut(s) 186, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.