Prupe.5G122700_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009082
Physical Location & Seq
Forward (+)
12169406 .. 12172164
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G122700.1

Sequence Viewer

Length: 915 bp
ATGGAGAGCATTGCCTTCAGTCTCTCATCTCCCCAAACCTTCTTCGTAGCCCTCATATTCACTTTTCTCTCCTTCTTCCTCGCTCTCCTCGCCGTTCGATCACTCACTTTCAAACCCAAATCAGGCGGCTCGGCTACCGACCTGTCGACGTCGAATAAAAACGAAAAGCTGCGAGCTTGCTGTGCTTGCAACTGTAACGACGTCGTCTCCGGCTCCGATTCGGAGCCGCTGAGGGCGCCGCACTTGAACGGCGGGACCGGTCCAGACGTGACGGAAAAGACGGCGACGGCGATTACGGAGCGGCAGACGGGCGCGTCGATGATGGAGCAGCTTGTTCCGGAGATTACGACGCACGCGCTTAGCTACTTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACTAATTCGCTCATGCGAAAGGCCGCGAATGATGATAATGCGTGGAAAGCGCTTTATCATAAGGACTTCACATTGGAACAGGATGGTATAACACCAGTTAATGGGTGGAAGGCTTACTATGCTGCTACAAGAGCGATTGTGAATGTCAATACTGAATTCTTTAACTTCATCAGAGAAAGGTCACTTGCAGAAATGAGTCGTTTATGGCTGAATGCAGACTATGTGAAGTGTGTTCATGCCTCAGGAGAACTCTTTTCAGGGTATAATGCAGTAATGCAGAGTTGGCGACTTGCGTTTGATTGGGAGCAAGGGGTCAACTTTCAGATTCGGGATGTGCGTGCTCGGGTTCTGACAGACATGGCTTGGGTTACCATGAAAACTTATTTTGAAATCGATACCAAGCCATTCATTGTGACCAACGTCTTTGAGTTTCATAATGGGCGATGGTACCTGGTGCATCATCACAGCTCTGATATGAATGGAGAGGTAGAACAGCCGATTGTGCAGGGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

305

Amino Acids

34.27

Weight (kDa)

5.91

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AatII GACGTC 2 cut(s) 152, 204
Acc65I GGTACC 1 cut(s) 846
AccB1I GGYRCC 2 cut(s) 235, 846
AccB7I CCANNNNNTGG 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 146
AccII CGCG 3 cut(s) 314, 356, 425
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 6 cut(s) 126, 227, 239, 252, 301, 423
AcsI RAATTY 1 cut(s) 554
AcyI GRCGYC 3 cut(s) 149, 201, 236
AfaI GTAC 1 cut(s) 848
AfeI AGCGCT 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 122, 500
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 3 cut(s) 112, 247, 788
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 5 cut(s) 169, 176, 331, 363, 867
AluI AGCT 5 cut(s) 169, 176, 331, 363, 867
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 26, 211
Ama87I CYCGRG 1 cut(s) 741
Aor13HI TCCGGA 1 cut(s) 337
Aor51HI AGCGCT 1 cut(s) 450
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 169, 328, 521
ApoI RAATTY 1 cut(s) 554
AsiGI ACCGGT 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 846
AspLEI GCGC 4 cut(s) 238, 314, 358, 451
AspS9I GGNCC 2 cut(s) 255, 260
AvaI CYCGRG 1 cut(s) 741
AvaII GGWCC 2 cut(s) 255, 260
AxyI CCTNAGG 1 cut(s) 640
BanI GGYRCC 2 cut(s) 235, 846
Bbv12I GWGCWC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 156, 340, 508
BccI CCATC 3 cut(s) 316, 476, 837
BceAI ACGGC 4 cut(s) 77, 265, 297, 303
BciT130I CCWGG 1 cut(s) 851
BcoDI GTCTC 2 cut(s) 26, 211
BfmI CTRYAG 1 cut(s) 385
BfoI RGCGCY 2 cut(s) 239, 452
BisI GCNGC 8 cut(s) 127, 170, 227, 239, 302, 329, 423, 522
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 8 cut(s) 128, 171, 228, 240, 303, 330, 424, 523
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 2 cut(s) 255, 260
BmeT110I CYCGRG 1 cut(s) 741
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 255, 260
BmiI GGNNCC 5 cut(s) 214, 225, 237, 256, 848
BmrFI CCNGG 1 cut(s) 851
BmsI GCATC 1 cut(s) 865
BoxI GACNNNNGTC 1 cut(s) 818
Bpu10I CCTNAGC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 792
BsaHI GRCGYC 3 cut(s) 149, 201, 236
BsaWI WCCGGW 2 cut(s) 257, 337
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 500
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 1 cut(s) 851
BseCI ATCGAT 1 cut(s) 792
BseGI GGATG 2 cut(s) 487, 736
BseLI CCNNNNNNNGG 2 cut(s) 122, 500
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 2 cut(s) 221, 654
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 156, 340, 508
Bsh1236I CGCG 3 cut(s) 314, 356, 425
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 2 cut(s) 235, 846
BshTI ACCGGT 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 3 cut(s) 210, 258, 338
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 122, 500
BsmAI GTCTC 2 cut(s) 26, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 741
Bsp1286I GDGCHC 1 cut(s) 742
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 98
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 6 cut(s) 126, 227, 239, 252, 301, 423
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 222, 653
BspDI ATCGAT 1 cut(s) 792
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 3 cut(s) 314, 356, 425
BspLI GGNNCC 5 cut(s) 214, 225, 237, 256, 848
BspT107I GGYRCC 2 cut(s) 235, 846
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 1 cut(s) 98
BssNI GRCGYC 3 cut(s) 149, 201, 236
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 3 cut(s) 149, 201, 236
BstC8I GCNNGC 5 cut(s) 174, 178, 187, 354, 738
BstDEI CTNAG 3 cut(s) 230, 359, 640
BstEII GGTNACC 1 cut(s) 766
BstF5I GGATG 2 cut(s) 487, 736
BstFNI CGCG 3 cut(s) 314, 356, 425
BstH2I RGCGCY 2 cut(s) 239, 452
BstHHI GCGC 4 cut(s) 238, 314, 358, 451
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 26, 211
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 9 cut(s) 89, 182, 186, 235, 446, 518, 530, 682, 901
BstNI CCWGG 1 cut(s) 851
BstPAI GACNNNNGTC 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 766
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 1 cut(s) 385
BstUI CGCG 3 cut(s) 314, 356, 425
BstV1I GCAGC 3 cut(s) 156, 340, 508
Bsu15I ATCGAT 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 640
BsuRI GGCC 1 cut(s) 422
BsuTUI ATCGAT 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 856
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 487, 736
Cac8I GCNNGC 5 cut(s) 174, 178, 187, 354, 738
CfoI GCGC 4 cut(s) 238, 314, 358, 451
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 255, 260
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 2 cut(s) 303, 358
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 1 cut(s) 847
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 4 cut(s) 412, 635, 757, 772
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 3 cut(s) 230, 359, 640
DinI GGCGCC 1 cut(s) 237
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
Eco47I GGWCC 2 cut(s) 255, 260
Eco47III AGCGCT 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 741
Eco91I GGTNACC 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 766
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 849
EgeI GGCGCC 1 cut(s) 237
EheI GGCGCC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 4 cut(s) 415, 638, 760, 775
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 411, 634, 756, 771
FauI CCCGC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 8 cut(s) 127, 170, 227, 239, 302, 329, 423, 522
FokI GGATG 2 cut(s) 494, 743
Fsp4HI GCNGC 8 cut(s) 127, 170, 227, 239, 302, 329, 423, 522
GlaI GCGC 4 cut(s) 237, 313, 357, 450
GluI GCNGC 8 cut(s) 127, 170, 227, 239, 302, 329, 423, 522
HaeII RGCGCY 2 cut(s) 239, 452
HaeIII GGCC 1 cut(s) 422
HapII CCGG 3 cut(s) 210, 258, 338
HgaI GACGC 2 cut(s) 303, 358
HhaI GCGC 4 cut(s) 238, 314, 358, 451
Hin1I GRCGYC 3 cut(s) 149, 201, 236
Hin1II CATG 4 cut(s) 415, 638, 760, 775
Hin6I GCGC 4 cut(s) 236, 312, 356, 449
HinP1I GCGC 4 cut(s) 236, 312, 356, 449
HincII GTYRAC 2 cut(s) 147, 715
HindII GTYRAC 2 cut(s) 147, 715
HinfI GANTC 3 cut(s) 218, 595, 724
HpaII CCGG 3 cut(s) 210, 258, 338
Hpy166II GTNNAC 2 cut(s) 147, 715
Hpy188I TCNGA 7 cut(s) 217, 223, 378, 572, 723, 750, 871
Hpy188III TCNNGA 4 cut(s) 263, 338, 642, 728
Hpy8I GTNNAC 2 cut(s) 147, 715
Hpy99I CGWCG 7 cut(s) 151, 154, 203, 206, 289, 319, 352
HpyAV CCTTC 4 cut(s) 25, 49, 82, 502
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 4 cut(s) 149, 201, 267, 819
HpyCH4V TGCA 7 cut(s) 189, 587, 614, 668, 676, 856, 904
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 182, 186, 235, 446, 518, 530, 682, 901
HpyF3I CTNAG 3 cut(s) 230, 359, 640
HpySE526I ACGT 4 cut(s) 149, 201, 267, 819
Hsp92I GRCGYC 3 cut(s) 149, 201, 236
Hsp92II CATG 4 cut(s) 415, 638, 760, 775
HspAI GCGC 4 cut(s) 236, 312, 356, 449
KasI GGCGCC 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 337
KpnI GGTACC 1 cut(s) 850
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 5 cut(s) 218, 223, 298, 325, 703
Lsp1109I GCAGC 3 cut(s) 156, 340, 508
LweI GCATC 1 cut(s) 865
MabI ACCWGGT 1 cut(s) 849
MaeII ACGT 4 cut(s) 149, 201, 267, 819
MaeIII GTNAC 5 cut(s) 194, 268, 579, 766, 811
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 301
MboI GATC 1 cut(s) 98
MboII GAAGA 2 cut(s) 34, 67
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 2 cut(s) 403, 554
Mly113I GGCGCC 1 cut(s) 236
MlyI GAGTC 1 cut(s) 604
MnlI CCTC 7 cut(s) 62, 89, 98, 225, 392, 649, 877
MroI TCCGGA 1 cut(s) 337
MseI TTAA 2 cut(s) 498, 561
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 3 cut(s) 210, 258, 338
MspR9I CCNGG 1 cut(s) 851
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 3 cut(s) 314, 356, 425
MwoI GCNNNNNNNGC 9 cut(s) 89, 182, 186, 235, 446, 518, 530, 682, 901
NarI GGCGCC 1 cut(s) 236
NdeII GATC 1 cut(s) 98
NlaIII CATG 4 cut(s) 415, 638, 760, 775
NlaIV GGNNCC 5 cut(s) 214, 225, 237, 256, 848
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 3 cut(s) 268, 579, 811
PcsI WCGNNNNNNNCGW 3 cut(s) 287, 314, 733
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 218, 724
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 500
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 8 cut(s) 128, 171, 228, 240, 303, 330, 424, 523
PleI GAGTC 1 cut(s) 603
PluTI GGCGCC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 603
PshAI GACNNNNGTC 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 849
PspEI GGTNACC 1 cut(s) 766
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 5 cut(s) 214, 225, 237, 256, 848
PspPI GGNCC 2 cut(s) 255, 260
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
SalI GTCGAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 498, 561
SatI GCNGC 8 cut(s) 127, 170, 227, 239, 302, 329, 423, 522
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 255, 260
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 1 cut(s) 385
SfoI GGCGCC 1 cut(s) 237
SinI GGWCC 2 cut(s) 255, 260
Sse9I AATT 2 cut(s) 403, 554
SsiI CCGC 6 cut(s) 126, 227, 239, 252, 301, 423
SspDI GGCGCC 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 849
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 4 cut(s) 152, 204, 270, 822
TaqI TCGA 6 cut(s) 97, 146, 152, 317, 395, 792
TasI AATT 2 cut(s) 403, 554
TauI GCSGC 5 cut(s) 129, 229, 241, 304, 425
TfiI GAWTC 2 cut(s) 218, 724
Tru1I TTAA 2 cut(s) 498, 561
Tru9I TTAA 2 cut(s) 498, 561
TseFI GTSAC 3 cut(s) 268, 579, 811
TseI GCWGC 3 cut(s) 169, 328, 521
Tsp45I GTSAC 3 cut(s) 268, 579, 811
TspDTI ATGAA 6 cut(s) 556, 623, 788, 796, 821, 890
TspGWI ACGGA 2 cut(s) 287, 311
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 255, 260
XapI RAATTY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 146
ZraI GACGTC 2 cut(s) 150, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.