FvH4_5g04920

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009082
Physical Location & Seq
Forward (+)
2927056 .. 2929731
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04920.t1

Sequence Viewer

Length: 882 bp
ATGGAGATTACTTCCTTTACTATCTTCTCCTCCCAGACCTTCTCTGTAGCCCTCGCTTTCACTTTCCTCTCTCTCCTCCTCGCCGTCCTCGCCGTCCGATCACGCTCCTCCAAACCCCGGCGCTCACAATCGGACGGCGGCTCCTCGTCAACGGAAAACGATAAGCTCTGCAATTGCTTGTGTTACTGTAACGGCGCCGTCACGGGATCGGAACCGGTGGACGTGCCGCACTTGAACGGCGAGACGGAGAAGAAAACGGCTGTCACGGAGGCGGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACGAACTCGCTGATGCGAAAGGCGGCGAATGACGATAATGCTTGGAAAGCTCTGTATCATAAGGACTTTACGTCGGAACAGGATAGTGTAACTCCAGTCAATGGTTGGAAAGCTTACTATGCTGCTACAAGAGCAATTGTGAATGTCAATGTTCGTTTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCATTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTATAATGCTGTAGTACAGAGTTGGCAACTCGCTTTTAATTGGGAGCAAGGAGTAAACTTTCAAGTTCGGGATGTGCGTGCTCGCGTTCTGACTGACATGGCTTGGGTCACCATGAAAACCTATGTGGGTGATCACCTTGATACCGGTCCATTCAGTGTGACTAACATCTTTGAGTTTCATAATGGGCGGTGGTACATGGTGCATCATCACAGCTCTGTGTTGGATGAGGTAGAACACCAGAATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

294

Amino Acids

33.04

Weight (kDa)

5.86

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 104 - 144 6.4e-06 F-box-like
SnoaL_3 PF13474 170 - 286 2.1e-28 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 473
AccII CGCG 3 cut(s) 287, 329, 717
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 5 cut(s) 138, 227, 272, 395, 820
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 648, 827
AfiI CCNNNNNNNGG 2 cut(s) 117, 473
AgeI ACCGGT 2 cut(s) 214, 776
AgsI TTSAA 3 cut(s) 235, 535, 695
AhdI GACNNNNNGTC 1 cut(s) 442
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 5 cut(s) 166, 336, 422, 485, 846
AluI AGCT 5 cut(s) 166, 336, 422, 485, 846
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 2 cut(s) 236, 269
AlwI GGATC 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 620
AsiGI ACCGGT 2 cut(s) 214, 776
AspLEI GCGC 4 cut(s) 123, 197, 287, 331
AspS9I GGNCC 1 cut(s) 779
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 733, 758, 773
AvaII GGWCC 1 cut(s) 779
AxyI CCTNAGG 1 cut(s) 613
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 289
BceAI ACGGC 7 cut(s) 68, 77, 151, 182, 208, 253, 273
BciT130I CCWGG 1 cut(s) 341
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 236, 269
BfmI CTRYAG 3 cut(s) 45, 358, 642
BfoI RGCGCY 2 cut(s) 124, 198
BisI GCNGC 4 cut(s) 139, 227, 396, 495
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 4 cut(s) 140, 228, 397, 496
Bme1390I CCNGG 2 cut(s) 118, 341
Bme18I GGWCC 1 cut(s) 779
BmeRI GACNNNNNGTC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 4 cut(s) 142, 196, 213, 309
BmrFI CCNGG 2 cut(s) 118, 341
BmsI GCATC 2 cut(s) 375, 844
BpmI CTGGAG 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 3 cut(s) 214, 310, 776
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 473
Bse118I RCCGGY 2 cut(s) 214, 776
Bse1I ACTGG 1 cut(s) 467
Bse21I CCTNAGG 1 cut(s) 613
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 3 cut(s) 607, 709, 862
BseLI CCNNNNNNNGG 2 cut(s) 117, 473
BseMII CTCAG 2 cut(s) 346, 627
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 5 cut(s) 19, 65, 68, 97, 133
BseXI GCAGC 1 cut(s) 481
Bsh1236I CGCG 3 cut(s) 287, 329, 717
BshNI GGYRCC 1 cut(s) 194
BshTI ACCGGT 2 cut(s) 214, 776
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 4 cut(s) 118, 215, 311, 777
BslI CCNNNNNNNGG 2 cut(s) 117, 473
BsmAI GTCTC 2 cut(s) 236, 269
BsmBI CGTCTC 2 cut(s) 236, 269
BsmI GAATGC 2 cut(s) 589, 880
Bsp1286I GDGCHC 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 3 cut(s) 98, 206, 763
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 5 cut(s) 138, 227, 272, 395, 820
BspCNI CTCAG 2 cut(s) 345, 626
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 3 cut(s) 287, 329, 717
BspLI GGNNCC 4 cut(s) 142, 196, 213, 309
BspPI GGATC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 214, 776
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 2 cut(s) 214, 776
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 3 cut(s) 98, 206, 763
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 711, 715
BstDEI CTNAG 2 cut(s) 332, 613
BstEII GGTNACC 1 cut(s) 739
BstF5I GGATG 3 cut(s) 607, 709, 862
BstFNI CGCG 3 cut(s) 287, 329, 717
BstH2I RGCGCY 2 cut(s) 124, 198
BstHHI GCGC 4 cut(s) 123, 197, 287, 331
BstKTI GATC 3 cut(s) 101, 209, 766
BstMAI GTCTC 2 cut(s) 236, 269
BstMBI GATC 3 cut(s) 98, 206, 763
BstMWI GCNNNNNNNGC 4 cut(s) 89, 419, 491, 503
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 2 cut(s) 116, 339
BstSFI CTRYAG 3 cut(s) 45, 358, 642
BstUI CGCG 3 cut(s) 287, 329, 717
BstV1I GCAGC 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 613
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 607, 709, 862
BtsIMutI CAGTG 1 cut(s) 793
Cac8I GCNNGC 2 cut(s) 711, 715
CfoI GCGC 4 cut(s) 123, 197, 287, 331
Cfr10I RCCGGY 2 cut(s) 214, 776
Cfr13I GGNCC 1 cut(s) 779
CseI GACGC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 647, 826
CspAI ACCGGT 2 cut(s) 214, 776
CviAII CATG 3 cut(s) 730, 745, 829
CviQI GTAC 2 cut(s) 647, 826
DdeI CTNAG 2 cut(s) 332, 613
DinI GGCGCC 1 cut(s) 196
DpnI GATC 3 cut(s) 100, 208, 765
DpnII GATC 3 cut(s) 98, 206, 763
DrdI GACNNNNNNGTC 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 442
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 779
Eco81I CCTNAGG 1 cut(s) 613
Eco91I GGTNACC 1 cut(s) 739
EcoO65I GGTNACC 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
Esp3I CGTCTC 2 cut(s) 236, 269
FaeI CATG 3 cut(s) 733, 748, 832
FatI CATG 3 cut(s) 729, 744, 828
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 4 cut(s) 139, 227, 396, 495
FokI GGATG 3 cut(s) 594, 716, 869
Fsp4HI GCNGC 4 cut(s) 139, 227, 396, 495
GlaI GCGC 4 cut(s) 122, 196, 286, 330
GluI GCNGC 4 cut(s) 139, 227, 396, 495
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 2 cut(s) 124, 198
HapII CCGG 4 cut(s) 118, 215, 311, 777
HgaI GACGC 1 cut(s) 276
HhaI GCGC 4 cut(s) 123, 197, 287, 331
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 733, 748, 832
Hin6I GCGC 4 cut(s) 121, 195, 285, 329
HinP1I GCGC 4 cut(s) 121, 195, 285, 329
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 1 cut(s) 568
HpaII CCGG 4 cut(s) 118, 215, 311, 777
HphI GGTGA 3 cut(s) 733, 758, 773
Hpy166II GTNNAC 3 cut(s) 150, 220, 688
Hpy188I TCNGA 7 cut(s) 98, 133, 211, 351, 448, 545, 723
Hpy188III TCNNGA 4 cut(s) 311, 560, 615, 701
Hpy8I GTNNAC 3 cut(s) 150, 220, 688
Hpy99I CGWCG 3 cut(s) 283, 292, 448
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 222, 443
HpyCH4V TGCA 3 cut(s) 171, 587, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 419, 491, 503
HpyF3I CTNAG 2 cut(s) 332, 613
HpySE526I ACGT 2 cut(s) 222, 443
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 733, 748, 832
HspAI GCGC 4 cut(s) 121, 195, 285, 329
KasI GGCGCC 1 cut(s) 194
Kpn2I TCCGGA 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 3 cut(s) 98, 206, 763
LmnI GCTCC 4 cut(s) 110, 146, 298, 676
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 375, 844
MaeII ACGT 2 cut(s) 222, 443
MaeIII GTNAC 8 cut(s) 182, 188, 199, 262, 460, 552, 739, 790
MalI GATC 3 cut(s) 100, 208, 765
MboI GATC 3 cut(s) 98, 206, 763
MboII GAAGA 3 cut(s) 16, 262, 523
MfeI CAATTG 2 cut(s) 172, 507
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 4 cut(s) 172, 507, 620, 670
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 3 cut(s) 426, 458, 834
MroI TCCGGA 1 cut(s) 310
MseI TTAA 1 cut(s) 669
MslI CAYNNNNRTG 1 cut(s) 873
MspI CCGG 4 cut(s) 118, 215, 311, 777
MspR9I CCNGG 2 cut(s) 118, 341
MunI CAATTG 2 cut(s) 172, 507
Mva1269I GAATGC 2 cut(s) 589, 880
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 3 cut(s) 287, 329, 717
MwoI GCNNNNNNNGC 4 cut(s) 89, 419, 491, 503
NarI GGCGCC 1 cut(s) 195
NciI CCSGG 1 cut(s) 118
NdeII GATC 3 cut(s) 98, 206, 763
NlaIII CATG 3 cut(s) 733, 748, 832
NlaIV GGNNCC 4 cut(s) 142, 196, 213, 309
NmuCI GTSAC 5 cut(s) 199, 262, 552, 739, 790
PcsI WCGNNNNNNNCGW 3 cut(s) 284, 287, 706
PctI GAATGC 2 cut(s) 589, 880
PflMI CCANNNNNTGG 1 cut(s) 473
PinAI ACCGGT 2 cut(s) 214, 776
PkrI GCNGC 4 cut(s) 140, 228, 397, 496
PleI GAGTC 1 cut(s) 576
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 4 cut(s) 142, 196, 213, 309
PspPI GGNCC 1 cut(s) 779
RsaI GTAC 2 cut(s) 648, 827
RsaNI GTAC 2 cut(s) 647, 826
RseI CAYNNNNRTG 1 cut(s) 873
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 4 cut(s) 139, 227, 396, 495
Sau3AI GATC 3 cut(s) 98, 206, 763
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 2 cut(s) 118, 341
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 2 cut(s) 375, 844
SfcI CTRYAG 3 cut(s) 45, 358, 642
SfoI GGCGCC 1 cut(s) 196
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 873
Sse9I AATT 4 cut(s) 172, 507, 620, 670
SsiI CCGC 5 cut(s) 138, 227, 272, 395, 820
SspDI GGCGCC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 116, 339
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 225, 446
TaqI TCGA 2 cut(s) 290, 368
TasI AATT 4 cut(s) 172, 507, 620, 670
TatI WGTACW 1 cut(s) 646
TauI GCSGC 3 cut(s) 141, 229, 398
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 5 cut(s) 199, 262, 552, 739, 790
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 5 cut(s) 199, 262, 552, 739, 790
TspDTI ATGAA 4 cut(s) 529, 596, 761, 800
TspGWI ACGGA 3 cut(s) 167, 260, 281
TspRI CASTG 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.