RLG00000004213

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009082
Physical Location & Seq
Forward (+)
57324570 .. 57326651
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004213

Sequence Viewer

Length: 894 bp
ATGGAGATTACTTCCTTTACCCTCTTCTCCTCCTCCCACACCTTCTTTGTAGCCCTCGCTTTCACTCTCCTCTGCCTCTTCCTCGCCGTCCTCACCGTCCGATCACGCCCCTCGAAACCCAGGCGCTCCCAATCGGACGGCGGTTCCTCCGACGACGACGACAAAAACGAGAAGCTCTGCAATTGCTTCTGTCACTCTAACGGTGCCGTTTCCAATTACTCGGAACCCGTGGACGCGCTGCACTTGAACGGCGGGACGGAAAAGCAGACGGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTGATGCGAAAGGCCGCCAATGACGATAATGCTTGGAAAGCTCTGTACCATAAGGACTTTACGTCGGAACAGGATACTGTAACTCCAGTTAATGGTTGGAAGGCTTACTATGCTGCTACGAGAGCAGTTGTGATGGTCAATGTTCAATTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTATAATGCTGTAGTACAGAGTTGGCAACTCGCCTTTAATTGGGAGCAAGGAGTTAACTTTCAGGTTCGGGATGTGCGTGCTCGTGTTCTGACGGACATGGCTTGGGTCACCATGAAAACCTATGTTGGTGATCACCTGGATACCGGTCCATTCAGTGTGACTAACATCTTTGAGTTCCATAATGGGCGTTGGTACATGGTGCATCATCACAGCTCTGTGTTGGATGAGGTAGAACACCAGAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

298

Amino Acids

33.7

Weight (kDa)

5.7

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 108 - 148 6.6e-06 F-box-like
SnoaL_3 PF13474 176 - 290 1.7e-27 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 3 cut(s) 236, 299, 341
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 3 cut(s) 141, 252, 408
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 632
AfaI GTAC 3 cut(s) 440, 660, 839
AfiI CCNNNNNNNGG 2 cut(s) 485, 684
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 3 cut(s) 247, 539, 547
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 3 cut(s) 119, 351, 780
AluBI AGCT 4 cut(s) 175, 348, 434, 858
AluI AGCT 4 cut(s) 175, 348, 434, 858
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 2 cut(s) 270, 405
ApeKI GCWGC 2 cut(s) 238, 506
ApoI RAATTY 1 cut(s) 632
AsiGI ACCGGT 1 cut(s) 788
AspLEI GCGC 4 cut(s) 126, 238, 299, 343
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 85, 745, 770, 785
AvaII GGWCC 1 cut(s) 791
AxyI CCTNAGG 1 cut(s) 625
BanI GGYRCC 1 cut(s) 203
BauI CACGAG 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 2 cut(s) 225, 493
BccI CCATC 2 cut(s) 301, 520
BceAI ACGGC 6 cut(s) 71, 154, 191, 257, 265, 285
BciT130I CCWGG 3 cut(s) 121, 353, 782
BciVI GTATCC 2 cut(s) 460, 778
BclI TGATCA 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 370, 654
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 2 cut(s) 460, 778
BisI GCNGC 3 cut(s) 239, 408, 507
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 3 cut(s) 240, 409, 508
Bme1390I CCNGG 3 cut(s) 121, 353, 782
Bme18I GGWCC 1 cut(s) 791
BmeRI GACNNNNNGTC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 4 cut(s) 145, 205, 225, 321
BmrFI CCNGG 3 cut(s) 121, 353, 782
BmsI GCATC 2 cut(s) 387, 856
BpmI CTGGAG 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 119, 228
BsaWI WCCGGW 2 cut(s) 322, 788
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 684
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 479
Bse21I CCTNAGG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 3 cut(s) 121, 353, 782
BseDI CCNNGG 2 cut(s) 119, 228
BseGI GGATG 3 cut(s) 619, 721, 874
BseLI CCNNNNNNNGG 2 cut(s) 485, 684
BseMII CTCAG 2 cut(s) 358, 639
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 3 cut(s) 19, 22, 59
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 225, 493
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 236, 299, 341
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 272, 407
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 788
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 727
BsiSI CCGG 2 cut(s) 323, 789
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 485, 684
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 601, 892
BsnI GGCC 2 cut(s) 272, 407
Bsp1286I GDGCHC 1 cut(s) 727
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 101, 775
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 3 cut(s) 141, 252, 408
BspANI GGCC 2 cut(s) 272, 407
BspCNI CTCAG 2 cut(s) 357, 638
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 3 cut(s) 236, 299, 341
BspLI GGNNCC 4 cut(s) 145, 205, 225, 321
BspT107I GGYRCC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 2 cut(s) 119, 228
BssMI GATC 2 cut(s) 101, 775
BssSI CACGAG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 3 cut(s) 121, 353, 782
Bst4CI ACNGT 3 cut(s) 97, 203, 472
Bst6I CTCTTC 2 cut(s) 29, 83
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 2 cut(s) 344, 625
BstDSI CCRYGG 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 3 cut(s) 619, 721, 874
BstFNI CGCG 3 cut(s) 236, 299, 341
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 4 cut(s) 126, 238, 299, 343
BstKTI GATC 2 cut(s) 104, 778
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 101, 775
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 3 cut(s) 431, 503, 515
BstNI CCWGG 3 cut(s) 121, 353, 782
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 3 cut(s) 119, 351, 780
BstSFI CTRYAG 2 cut(s) 370, 654
BstUI CGCG 3 cut(s) 236, 299, 341
BstV1I GCAGC 2 cut(s) 225, 493
BstZI CGGCCG 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 625
BsuI GTATCC 2 cut(s) 460, 778
BsuRI GGCC 2 cut(s) 272, 407
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 3 cut(s) 619, 721, 874
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 4 cut(s) 126, 238, 299, 343
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 791
CseI GACGC 2 cut(s) 242, 288
Csp6I GTAC 3 cut(s) 439, 659, 838
CspAI ACCGGT 1 cut(s) 788
CviAII CATG 3 cut(s) 742, 757, 841
CviQI GTAC 3 cut(s) 439, 659, 838
DdeI CTNAG 2 cut(s) 344, 625
DpnI GATC 2 cut(s) 103, 777
DpnII GATC 2 cut(s) 101, 775
DrdI GACNNNNNNGTC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 29, 83
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 2 cut(s) 29, 83
EclXI CGGCCG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 791
Eco52I CGGCCG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 625
Eco91I GGTNACC 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 3 cut(s) 119, 351, 780
EcoT22I ATGCAT 1 cut(s) 892
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 3 cut(s) 745, 760, 844
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 741, 756, 840
FauI CCCGC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 3 cut(s) 239, 408, 507
FokI GGATG 3 cut(s) 606, 728, 881
Fsp4HI GCNGC 3 cut(s) 239, 408, 507
GlaI GCGC 4 cut(s) 125, 237, 298, 342
GluI GCNGC 3 cut(s) 239, 408, 507
GsuI CTGGAG 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 272, 407
HapII CCGG 2 cut(s) 323, 789
HgaI GACGC 2 cut(s) 242, 288
HhaI GCGC 4 cut(s) 126, 238, 299, 343
Hin1II CATG 3 cut(s) 745, 760, 844
Hin6I GCGC 4 cut(s) 124, 236, 297, 341
HinP1I GCGC 4 cut(s) 124, 236, 297, 341
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 1 cut(s) 580
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 2 cut(s) 323, 789
HphI GGTGA 4 cut(s) 85, 745, 770, 785
Hpy166II GTNNAC 2 cut(s) 232, 700
Hpy188I TCNGA 8 cut(s) 101, 136, 151, 223, 363, 460, 557, 735
Hpy188III TCNNGA 4 cut(s) 323, 572, 627, 713
Hpy8I GTNNAC 2 cut(s) 232, 700
Hpy99I CGWCG 6 cut(s) 155, 158, 161, 295, 304, 460
HpyAV CCTTC 2 cut(s) 52, 487
HpyCH4III ACNGT 3 cut(s) 97, 203, 472
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 5 cut(s) 180, 241, 599, 847, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 503, 515
HpyF3I CTNAG 2 cut(s) 344, 625
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 3 cut(s) 745, 760, 844
HspAI GCGC 4 cut(s) 124, 236, 297, 341
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 775
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 2 cut(s) 101, 775
LmnI GCTCC 3 cut(s) 131, 310, 688
Lsp1109I GCAGC 2 cut(s) 225, 493
LweI GCATC 2 cut(s) 387, 856
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 6 cut(s) 191, 274, 472, 564, 751, 802
MalI GATC 2 cut(s) 103, 777
MboI GATC 2 cut(s) 101, 775
MboII GAAGA 3 cut(s) 16, 70, 535
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 727
MluCI AATT 6 cut(s) 181, 214, 388, 539, 632, 682
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 4 cut(s) 174, 438, 470, 846
Mph1103I ATGCAT 1 cut(s) 892
MroI TCCGGA 1 cut(s) 322
MseI TTAA 3 cut(s) 483, 681, 699
MslI CAYNNNNRTG 1 cut(s) 885
MspI CCGG 2 cut(s) 323, 789
MspR9I CCNGG 3 cut(s) 121, 353, 782
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 2 cut(s) 601, 892
MvaI CCWGG 3 cut(s) 121, 353, 782
MvnI CGCG 3 cut(s) 236, 299, 341
MwoI GCNNNNNNNGC 3 cut(s) 431, 503, 515
NdeII GATC 2 cut(s) 101, 775
NlaIII CATG 3 cut(s) 745, 760, 844
NlaIV GGNNCC 4 cut(s) 145, 205, 225, 321
NmuCI GTSAC 4 cut(s) 191, 564, 751, 802
NsiI ATGCAT 1 cut(s) 892
PcsI WCGNNNNNNNCGW 4 cut(s) 165, 296, 299, 718
PctI GAATGC 2 cut(s) 601, 892
PflMI CCANNNNNTGG 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 3 cut(s) 240, 409, 508
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 119, 351, 780
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 3 cut(s) 119, 351, 780
PspN4I GGNNCC 4 cut(s) 145, 205, 225, 321
PspPI GGNCC 1 cut(s) 791
RsaI GTAC 3 cut(s) 440, 660, 839
RsaNI GTAC 3 cut(s) 439, 659, 838
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 3 cut(s) 483, 681, 699
SatI GCNGC 3 cut(s) 239, 408, 507
Sau3AI GATC 2 cut(s) 101, 775
Sau96I GGNCC 1 cut(s) 791
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 3 cut(s) 121, 353, 782
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 2 cut(s) 387, 856
SfcI CTRYAG 2 cut(s) 370, 654
SinI GGWCC 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 885
Sse9I AATT 6 cut(s) 181, 214, 388, 539, 632, 682
SsiI CCGC 3 cut(s) 141, 252, 408
StyD4I CCNGG 3 cut(s) 119, 351, 780
TaaI ACNGT 3 cut(s) 97, 203, 472
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 113, 302, 380
TasI AATT 6 cut(s) 181, 214, 388, 539, 632, 682
TatI WGTACW 1 cut(s) 658
TauI GCSGC 1 cut(s) 410
Tru1I TTAA 3 cut(s) 483, 681, 699
Tru9I TTAA 3 cut(s) 483, 681, 699
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 4 cut(s) 191, 564, 751, 802
TseI GCWGC 2 cut(s) 238, 506
Tsp45I GTSAC 4 cut(s) 191, 564, 751, 802
TspDTI ATGAA 3 cut(s) 541, 608, 773
TspGWI ACGGA 3 cut(s) 272, 293, 752
TspRI CASTG 1 cut(s) 805
Van91I CCANNNNNTGG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 791
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.