Rroxscaffold_3G00261510

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009082
Physical Location & Seq
Forward (+)
55780388 .. 55783117
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261510.1

Sequence Viewer

Length: 906 bp
ATGGAGATTACTTCCTTTACCCTCTTCTCCTCCTCCCACACCTTCTTTGTAGCCCTCGTTTTCACTCTCCTCTGCCTCTTCCTCGCCGCTCTCACCGTCCGATCACGCCCCTCGAAACCCAGGCGCTCCCAATCGGACGGCGGTTCCTCCTCCTCCTCCGACGACGACGACAAAAACGAGAAGTTCTTCTGCAATTGCTTCTGTCACTCTAACGGCGCCCTTTCCGATTATTCGGAACCCGTGGACGCGTCGCACTTGAACGGCGGGACGGAGAAGCAGACAGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTGATGCGAAAGGCCGCCAATGACGATAATGCTTGGAAGGCTCTGTACCATAAGGACTTTACGTCGGAACAGGATACTGTAACTCCAGTTAATGGTTGGAAGGCTTACTATGCTGCTACGAGAGCAGTTGTGATGGTCAATGTTCAATTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTTTAGTGCTGTAGTACAGAGTTGGCAACTCGCCTTTAATTGGGAGCAAGGAGTTAACTTTCAGGTTCGGGATGTGCGTGCTCGTGTTCTGACTGACATGGCTTGGGTCACCATGAAAACCTATGTTGGTGATCACCTGGATACCGGTCCATTCAGTGTGACTAACATCTTTGAGTTCCATAATGGGCGGTGGTACATGGTGCATCATCACAGCTCTGTGTTGGATGAGGTAGAACACCAGAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

301

Amino Acids

34.09

Weight (kDa)

5.59

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 112 - 152 6.7e-06 F-box-like
SnoaL_3 PF13474 180 - 294 1.8e-26 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 89
AccII CGCG 3 cut(s) 248, 311, 353
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 5 cut(s) 87, 141, 264, 420, 844
AcsI RAATTY 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 3 cut(s) 452, 672, 851
AfiI CCNNNNNNNGG 2 cut(s) 497, 696
AflIII ACRYGT 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 800
AgsI TTSAA 3 cut(s) 259, 551, 559
AhdI GACNNNNNGTC 1 cut(s) 466
AjnI CCWGG 3 cut(s) 119, 363, 792
AluBI AGCT 2 cut(s) 360, 870
AluI AGCT 2 cut(s) 360, 870
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 1 cut(s) 644
AsiGI ACCGGT 1 cut(s) 800
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 4 cut(s) 126, 218, 311, 355
AspS9I GGNCC 1 cut(s) 803
AsuHPI GGTGA 4 cut(s) 85, 757, 782, 797
AvaII GGWCC 1 cut(s) 803
AxyI CCTNAGG 1 cut(s) 637
BanI GGYRCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BauI CACGAG 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 1 cut(s) 505
BccI CCATC 2 cut(s) 313, 532
BceAI ACGGC 4 cut(s) 154, 229, 269, 277
BciT130I CCWGG 3 cut(s) 121, 365, 794
BciVI GTATCC 2 cut(s) 472, 790
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 382, 666
BfoI RGCGCY 2 cut(s) 127, 219
BfuI GTATCC 2 cut(s) 472, 790
BisI GCNGC 3 cut(s) 87, 420, 519
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 3 cut(s) 88, 421, 520
Bme1390I CCNGG 3 cut(s) 121, 365, 794
Bme18I GGWCC 1 cut(s) 803
BmeRI GACNNNNNGTC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 4 cut(s) 145, 217, 237, 333
BmrFI CCNGG 3 cut(s) 121, 365, 794
BmsI GCATC 2 cut(s) 399, 868
BpmI CTGGAG 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 119, 240
BsaWI WCCGGW 2 cut(s) 334, 800
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 696
Bse118I RCCGGY 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 121, 365, 794
BseDI CCNNGG 2 cut(s) 119, 240
BseGI GGATG 3 cut(s) 631, 733, 886
BseLI CCNNNNNNNGG 2 cut(s) 497, 696
BseMII CTCAG 2 cut(s) 370, 651
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 6 cut(s) 19, 22, 59, 139, 142, 145
BseXI GCAGC 1 cut(s) 505
Bsh1236I CGCG 3 cut(s) 248, 311, 353
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 2 cut(s) 335, 801
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 497, 696
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 2 cut(s) 613, 904
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 739
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 2 cut(s) 101, 787
Bsp1720I GCTNAGC 1 cut(s) 356
BspACI CCGC 5 cut(s) 87, 141, 264, 420, 844
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 369, 650
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 3 cut(s) 248, 311, 353
BspLI GGNNCC 4 cut(s) 145, 217, 237, 333
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 800
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 119, 240
BssMI GATC 2 cut(s) 101, 787
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 3 cut(s) 121, 365, 794
Bst4CI ACNGT 2 cut(s) 97, 484
Bst6I CTCTTC 2 cut(s) 29, 83
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 2 cut(s) 356, 637
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 3 cut(s) 631, 733, 886
BstFNI CGCG 3 cut(s) 248, 311, 353
BstH2I RGCGCY 2 cut(s) 127, 219
BstHHI GCGC 4 cut(s) 126, 218, 311, 355
BstKTI GATC 2 cut(s) 104, 790
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 101, 787
BstMWI GCNNNNNNNGC 3 cut(s) 443, 515, 527
BstNI CCWGG 3 cut(s) 121, 365, 794
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 3 cut(s) 119, 363, 792
BstSFI CTRYAG 2 cut(s) 382, 666
BstUI CGCG 3 cut(s) 248, 311, 353
BstV1I GCAGC 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 637
BsuI GTATCC 2 cut(s) 472, 790
BsuRI GGCC 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 3 cut(s) 631, 733, 886
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 1 cut(s) 735
CfoI GCGC 4 cut(s) 126, 218, 311, 355
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 1 cut(s) 803
CseI GACGC 3 cut(s) 237, 254, 300
Csp6I GTAC 3 cut(s) 451, 671, 850
CspAI ACCGGT 1 cut(s) 800
CviAII CATG 3 cut(s) 754, 769, 853
CviQI GTAC 3 cut(s) 451, 671, 850
DdeI CTNAG 2 cut(s) 356, 637
DinI GGCGCC 1 cut(s) 217
DpnI GATC 2 cut(s) 103, 789
DpnII GATC 2 cut(s) 101, 787
DrdI GACNNNNNNGTC 1 cut(s) 310
DriI GACNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 29, 83
Eam1105I GACNNNNNGTC 1 cut(s) 466
EarI CTCTTC 2 cut(s) 29, 83
Eco47I GGWCC 1 cut(s) 803
Eco81I CCTNAGG 1 cut(s) 637
Eco91I GGTNACC 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 119, 363, 792
EcoT22I ATGCAT 1 cut(s) 904
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 3 cut(s) 757, 772, 856
FaqI GGGAC 1 cut(s) 280
FatI CATG 3 cut(s) 753, 768, 852
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 3 cut(s) 87, 420, 519
FokI GGATG 3 cut(s) 618, 740, 893
Fsp4HI GCNGC 3 cut(s) 87, 420, 519
GlaI GCGC 4 cut(s) 125, 217, 310, 354
GluI GCNGC 3 cut(s) 87, 420, 519
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 2 cut(s) 127, 219
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 335, 801
HgaI GACGC 3 cut(s) 237, 254, 300
HhaI GCGC 4 cut(s) 126, 218, 311, 355
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 3 cut(s) 757, 772, 856
Hin6I GCGC 4 cut(s) 124, 216, 309, 353
HinP1I GCGC 4 cut(s) 124, 216, 309, 353
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 1 cut(s) 592
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 2 cut(s) 335, 801
HphI GGTGA 4 cut(s) 85, 757, 782, 797
Hpy166II GTNNAC 2 cut(s) 244, 712
Hpy188I TCNGA 9 cut(s) 101, 136, 160, 226, 235, 375, 472, 569, 747
Hpy188III TCNNGA 4 cut(s) 335, 584, 639, 725
Hpy8I GTNNAC 2 cut(s) 244, 712
Hpy99I CGWCG 7 cut(s) 164, 167, 170, 253, 307, 316, 472
HpyAV CCTTC 3 cut(s) 52, 436, 499
HpyCH4III ACNGT 2 cut(s) 97, 484
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 4 cut(s) 192, 611, 859, 902
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 515, 527
HpyF3I CTNAG 2 cut(s) 356, 637
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 3 cut(s) 757, 772, 856
HspAI GCGC 4 cut(s) 124, 216, 309, 353
KasI GGCGCC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 787
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 2 cut(s) 101, 787
LmnI GCTCC 3 cut(s) 131, 322, 700
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 399, 868
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 6 cut(s) 203, 286, 484, 576, 763, 814
MalI GATC 2 cut(s) 103, 789
MbiI CCGCTC 1 cut(s) 89
MboI GATC 2 cut(s) 101, 787
MboII GAAGA 4 cut(s) 16, 70, 178, 547
MfeI CAATTG 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 5 cut(s) 193, 400, 551, 644, 694
MluI ACGCGT 1 cut(s) 246
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 4 cut(s) 183, 450, 482, 858
Mph1103I ATGCAT 1 cut(s) 904
MroI TCCGGA 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 185
MseI TTAA 3 cut(s) 495, 693, 711
MslI CAYNNNNRTG 1 cut(s) 897
MspI CCGG 2 cut(s) 335, 801
MspR9I CCNGG 3 cut(s) 121, 365, 794
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 2 cut(s) 613, 904
MvaI CCWGG 3 cut(s) 121, 365, 794
MvnI CGCG 3 cut(s) 248, 311, 353
MwoI GCNNNNNNNGC 3 cut(s) 443, 515, 527
NarI GGCGCC 1 cut(s) 216
NdeII GATC 2 cut(s) 101, 787
NlaIII CATG 3 cut(s) 757, 772, 856
NlaIV GGNNCC 4 cut(s) 145, 217, 237, 333
NmuCI GTSAC 4 cut(s) 203, 576, 763, 814
NsiI ATGCAT 1 cut(s) 904
PcsI WCGNNNNNNNCGW 4 cut(s) 174, 308, 311, 730
PctI GAATGC 2 cut(s) 613, 904
PdmI GAANNNNTTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 800
PkrI GCNGC 3 cut(s) 88, 421, 520
PleI GAGTC 1 cut(s) 600
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 600
Psp6I CCWGG 3 cut(s) 119, 363, 792
PspEI GGTNACC 1 cut(s) 763
PspGI CCWGG 3 cut(s) 119, 363, 792
PspN4I GGNNCC 4 cut(s) 145, 217, 237, 333
PspPI GGNCC 1 cut(s) 803
RsaI GTAC 3 cut(s) 452, 672, 851
RsaNI GTAC 3 cut(s) 451, 671, 850
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 3 cut(s) 495, 693, 711
SatI GCNGC 3 cut(s) 87, 420, 519
Sau3AI GATC 2 cut(s) 101, 787
Sau96I GGNCC 1 cut(s) 803
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 121, 365, 794
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 2 cut(s) 399, 868
SfcI CTRYAG 2 cut(s) 382, 666
SfoI GGCGCC 1 cut(s) 217
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 897
Sse9I AATT 5 cut(s) 193, 400, 551, 644, 694
SsiI CCGC 5 cut(s) 87, 141, 264, 420, 844
SspDI GGCGCC 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 119, 363, 792
TaaI ACNGT 2 cut(s) 97, 484
TaiI ACGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 113, 314, 392
TasI AATT 5 cut(s) 193, 400, 551, 644, 694
TatI WGTACW 1 cut(s) 670
TauI GCSGC 2 cut(s) 89, 422
Tru1I TTAA 3 cut(s) 495, 693, 711
Tru9I TTAA 3 cut(s) 495, 693, 711
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 4 cut(s) 203, 576, 763, 814
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 4 cut(s) 203, 576, 763, 814
TspDTI ATGAA 3 cut(s) 553, 620, 785
TspGWI ACGGA 2 cut(s) 284, 305
TspRI CASTG 1 cut(s) 817
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 803
XapI RAATTY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.