Rh7CG145400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009082
Physical Location & Seq
Reverse (-)
11829673 .. 11832718
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG145400.1

Sequence Viewer

Length: 756 bp
ATGGAGATTACTTCCTTTACCCTCTTCTCCTCCTCCCAAACCTTCTTTGTAGCCCTCGCTTTCACTCTCCTCTGCCTCTTCCTCACCTTCCTCACCGTCCGATCACGCCCCTCGAAACCCAGGCGCTCCCAATCGGACGGCGGTTCCTCTTCCGACGACGACAAAAACAAGAAGCTCTGCAATTGCTTCTGTCACTCTAACGGCGCGGTTTTCAATTACTCGGAACCCGTGGACGCGCCGCACTTGAACGGCGGGACGGAGAAGCAGACGGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTGATGCGAAAGGCCGCCAATGACGATAATGCTTGGAAAGCTCTGTACCATAAGGACTTTACGTCGGAACAGGATACTGTAACTCCAGTTAATGGTTGGAAGGCTTACTATGCTGCTACGAGAGCAGTTGTGATGGTCAATGTTCAATTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTATGATTCCTCTTATCTGTGTAAAATGTTCAGAAACTACATATCCACAGATGTTTTCTTCTGTGTAGTTCGTCCAGTAATGGGCACATTTGGTGTTTCTTTTAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

6.21

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 108 - 148 5.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 4 cut(s) 206, 236, 299, 341
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 5 cut(s) 141, 206, 239, 252, 408
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 632
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 485, 725
AgsI TTSAA 4 cut(s) 214, 247, 539, 547
AhdI GACNNNNNGTC 1 cut(s) 454
AjnI CCWGG 2 cut(s) 119, 351
AluBI AGCT 3 cut(s) 175, 348, 434
AluI AGCT 3 cut(s) 175, 348, 434
Alw26I GTCTC 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 2 cut(s) 270, 405
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 5 cut(s) 126, 206, 238, 299, 343
AsuHPI GGTGA 2 cut(s) 76, 85
AxyI CCTNAGG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 301, 520
BceAI ACGGC 5 cut(s) 154, 217, 257, 265, 285
BciT130I CCWGG 2 cut(s) 121, 353
BciVI GTATCC 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 127
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 3 cut(s) 239, 408, 507
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 3 cut(s) 240, 409, 508
Bme1390I CCNGG 2 cut(s) 121, 353
BmeRI GACNNNNNGTC 1 cut(s) 454
BmiI GGNNCC 3 cut(s) 145, 225, 321
BmrFI CCNGG 2 cut(s) 121, 353
BmsI GCATC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 119, 228
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 725
Bse1I ACTGG 2 cut(s) 479, 719
Bse21I CCTNAGG 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 2 cut(s) 121, 353
BseDI CCNNGG 2 cut(s) 119, 228
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 2 cut(s) 485, 725
BseMII CTCAG 2 cut(s) 358, 639
BseNI ACTGG 2 cut(s) 479, 719
BseRI GAGGAG 3 cut(s) 19, 22, 59
BseSI GKGCMC 1 cut(s) 731
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 4 cut(s) 206, 236, 299, 341
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 272, 407
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 485, 725
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 2 cut(s) 272, 407
Bsp1286I GDGCHC 1 cut(s) 731
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 101
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 5 cut(s) 141, 206, 239, 252, 408
BspANI GGCC 2 cut(s) 272, 407
BspCNI CTCAG 2 cut(s) 357, 638
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 4 cut(s) 206, 236, 299, 341
BspLI GGNNCC 3 cut(s) 145, 225, 321
BsrI ACTGG 2 cut(s) 479, 719
BssECI CCNNGG 2 cut(s) 119, 228
BssMI GATC 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 121, 353
Bst4CI ACNGT 2 cut(s) 97, 472
Bst6I CTCTTC 3 cut(s) 29, 83, 154
BstDEI CTNAG 2 cut(s) 344, 625
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 4 cut(s) 206, 236, 299, 341
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 5 cut(s) 126, 206, 238, 299, 343
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 101
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 3 cut(s) 431, 503, 515
BstNI CCWGG 2 cut(s) 121, 353
BstSCI CCNGG 2 cut(s) 119, 351
BstSFI CTRYAG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 4 cut(s) 206, 236, 299, 341
BstV1I GCAGC 1 cut(s) 493
BstZI CGGCCG 1 cut(s) 270
Bsu36I CCTNAGG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 2 cut(s) 272, 407
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 619
CfoI GCGC 5 cut(s) 126, 206, 238, 299, 343
CseI GACGC 2 cut(s) 242, 288
Csp6I GTAC 1 cut(s) 439
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 2 cut(s) 344, 625
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
DrdI GACNNNNNNGTC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 3 cut(s) 29, 83, 154
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 3 cut(s) 29, 83, 154
EclXI CGGCCG 1 cut(s) 270
Eco52I CGGCCG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 2 cut(s) 119, 351
Esp3I CGTCTC 1 cut(s) 281
FaiI YATR 6 cut(s) 444, 504, 589, 606, 648, 686
FaqI GGGAC 1 cut(s) 268
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 239, 408, 507
FokI GGATG 1 cut(s) 606
Fsp4HI GCNGC 3 cut(s) 239, 408, 507
GlaI GCGC 5 cut(s) 125, 205, 237, 298, 342
GluI GCNGC 3 cut(s) 239, 408, 507
GsuI CTGGAG 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 272, 407
HapII CCGG 1 cut(s) 323
HgaI GACGC 2 cut(s) 242, 288
HhaI GCGC 5 cut(s) 126, 206, 238, 299, 343
Hin6I GCGC 5 cut(s) 124, 204, 236, 297, 341
HinP1I GCGC 5 cut(s) 124, 204, 236, 297, 341
HinfI GANTC 2 cut(s) 580, 650
HpaII CCGG 1 cut(s) 323
HphI GGTGA 2 cut(s) 76, 85
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 8 cut(s) 101, 136, 154, 223, 363, 460, 557, 677
Hpy188III TCNNGA 3 cut(s) 323, 572, 627
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 5 cut(s) 158, 161, 295, 304, 460
HpyAV CCTTC 3 cut(s) 52, 97, 487
HpyCH4III ACNGT 2 cut(s) 97, 472
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 180, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 503, 515
HpyF3I CTNAG 2 cut(s) 344, 625
HpySE526I ACGT 1 cut(s) 455
HspAI GCGC 5 cut(s) 124, 204, 236, 297, 341
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 131, 310
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 387
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 4 cut(s) 191, 274, 472, 564
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 5 cut(s) 16, 70, 141, 535, 694
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 5 cut(s) 181, 214, 388, 539, 632
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 3 cut(s) 177, 438, 470
MroI TCCGGA 1 cut(s) 322
MseI TTAA 2 cut(s) 483, 747
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 121, 353
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 2 cut(s) 121, 353
MvnI CGCG 4 cut(s) 206, 236, 299, 341
MwoI GCNNNNNNNGC 3 cut(s) 431, 503, 515
NdeII GATC 1 cut(s) 101
NlaIV GGNNCC 3 cut(s) 145, 225, 321
NmuCI GTSAC 2 cut(s) 191, 564
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 299
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 650
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 3 cut(s) 240, 409, 508
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 119, 351
PspGI CCWGG 2 cut(s) 119, 351
PspN4I GGNNCC 3 cut(s) 145, 225, 321
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 2 cut(s) 483, 747
SatI GCNGC 3 cut(s) 239, 408, 507
Sau3AI GATC 1 cut(s) 101
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 121, 353
SduI GDGCHC 1 cut(s) 731
SetI ASST 8 cut(s) 44, 89, 177, 350, 354, 436, 458, 566
SfaNI GCATC 1 cut(s) 387
SfcI CTRYAG 1 cut(s) 370
Sse9I AATT 5 cut(s) 181, 214, 388, 539, 632
SsiI CCGC 5 cut(s) 141, 206, 239, 252, 408
StyD4I CCNGG 2 cut(s) 119, 351
TaaI ACNGT 2 cut(s) 97, 472
TaiI ACGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 113, 302, 380
TasI AATT 5 cut(s) 181, 214, 388, 539, 632
TauI GCSGC 2 cut(s) 241, 410
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 2 cut(s) 483, 747
Tru9I TTAA 2 cut(s) 483, 747
TseFI GTSAC 2 cut(s) 191, 564
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 191, 564
TspDTI ATGAA 2 cut(s) 541, 608
TspGWI ACGGA 2 cut(s) 272, 293
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.