MD14G1130800.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0009082
Physical Location & Seq
Forward (+)
20847954 .. 20850282
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1130800.v1.1.491

Sequence Viewer

Length: 909 bp
ATGGAGATTATTTCCCTCACTCTCTCGTCTCCTCAAACCTTCTTTGTAGCCCTAATTTTCACTCTTCTCTCATTTTTCCTTGCCCTCCTCGCCGTCCGATTACTCCCCGACAAATCCAAATCGGGCGGCGCTGCCTCTGCCACCTCGTCGTCGAGTGGAAGCGGGAAGGTCTGCACTTGCTCTGCTCGTCACCGGGAAGAGGTCTCCGATTCGGGGGCCGTAAGCGCGCCGCACTTGAACGGCGGGACGGGTACGGACGTGACGGAGAAGCCGACGACGACGGCGGCCGTACTGGAACGGCAGACGGGCGCGTCGATGATGGAGCAGCTGGTTCCGGAGATTACGACGCATGCCCTTAGCTATCTGGACTACCCGAGCCTATGTAGGCTTTCGATGACCAATTCGCTCATGCGGAAGGCCGCCAATGACGATAATGCTTGGAAGGCACTTTACCATAAGGACTTCACATTGGAACAGGATAGCGTGACACCAGTTAATGGATGGAAAGCTTACTACGCTGCTACAAGAGTGATTGTGAATATCAATACCGAATTCTTTAACCATATCCGAGGAAGGTCACTTCCAGAAATGAGTCGTTTATGGTTGAATGCAGATTATGTGAAGTGTGTTCATGCCTCTGGAGAACTCTTTTCAGGGTATAATGCTGTTATACAGAGTTGGCAACTAGCATTTAATTGGGAGCAAGGGGTGAACTTTCAGATTCGAGATGTGTGTGCCCGGGTTCTGACAGATATGGCTTGGGTTACCATGAAAACCTTTGTTGAAATCGACACTGGGCTATTCAGTGTGACTAACGTCTATGAGTTCCATAACGGGCGATGGTACATGGTGCATCATCATAGCTCTGTGATGGATGGAGAGGGAGAACAGCAGATTGTGCAGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box SnoaL_3

Protein Analysis

303

Amino Acids

33.46

Weight (kDa)

5.92

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 112 - 152 6.7e-06 F-box-like
SnoaL_3 PF13474 178 - 291 2.7e-25 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10925 AT4G10925 AT4G10925 AT4G10925 AT4G10925
fragaria_vesca FvH4_5g04920 FvH4_5g04920 FvH4_5g04920
malus_domestica MD06G1109700.v1.1 MD14G1130800.v1.1
prunus_persica Prupe.5G122700_v2.0.a1
pyrus_communis pycom06g10330
rosa_chinensis RchiOBHm_Chr7g0194161
rosa_laevigata RLG00000004213
rosa_multiflora Rmu_sc0009433.1_g000008
rosa_roxburghii Rroxscaffold_3G00261510
rosa_rugosa Rorug07G0014200
rosa_samantha Rh7AG141300 Rh7BG142000 Rh7CG145400 Rh7DG142800
rosa_wichuraiana Rw7G012090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 2 cut(s) 227, 311
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 7 cut(s) 126, 162, 230, 243, 284, 412, 420
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 551
AfaI GTAC 3 cut(s) 253, 291, 845
AfiI CCNNNNNNNGG 3 cut(s) 199, 213, 497
AgsI TTSAA 3 cut(s) 238, 607, 785
AjiI CACGTC 1 cut(s) 259
AluBI AGCT 4 cut(s) 328, 360, 509, 864
AluI AGCT 4 cut(s) 328, 360, 509, 864
Alw26I GTCTC 2 cut(s) 33, 208
Ama87I CYCGRG 2 cut(s) 373, 738
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 3 cut(s) 216, 285, 417
ApeKI GCWGC 3 cut(s) 131, 325, 518
ApoI RAATTY 1 cut(s) 551
AspLEI GCGC 4 cut(s) 131, 227, 229, 311
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 3 cut(s) 194, 739, 740
AsuHPI GGTGA 2 cut(s) 182, 721
AvaI CYCGRG 2 cut(s) 373, 738
BaeGI GKGCMC 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbvI GCAGC 3 cut(s) 118, 337, 505
BccI CCATC 5 cut(s) 313, 495, 834, 865, 869
BceAI ACGGC 6 cut(s) 77, 203, 256, 272, 297, 314
BcnI CCSGG 3 cut(s) 194, 739, 740
BcoDI GTCTC 2 cut(s) 33, 208
BfaI CTAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 7 cut(s) 127, 132, 230, 285, 326, 420, 519
BlsI GCNGC 7 cut(s) 128, 133, 231, 286, 327, 421, 520
Bme1390I CCNGG 3 cut(s) 194, 739, 740
BmeT110I CYCGRG 2 cut(s) 373, 738
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 217, 333
BmrFI CCNGG 3 cut(s) 194, 739, 740
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 1 cut(s) 862
BmuI ACTGGG 1 cut(s) 804
BoxI GACNNNNGTC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 356
BpuMI CCSGG 3 cut(s) 194, 739, 740
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 568, 738
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 213, 497
Bse1I ACTGG 3 cut(s) 297, 491, 799
BseAI TCCGGA 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 568, 738
BseGI GGATG 2 cut(s) 506, 880
BseLI CCNNNNNNNGG 3 cut(s) 199, 213, 497
BseNI ACTGG 3 cut(s) 297, 491, 799
BsePI GCGCGC 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 21, 77
BseSI GKGCMC 1 cut(s) 739
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 118, 337, 505
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 227, 311
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 218, 287, 419
BsiEI CGRYCG 1 cut(s) 288
BsiHKCI CYCGRG 2 cut(s) 373, 738
BsiSI CCGG 3 cut(s) 193, 335, 739
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 199, 213, 497
BsmAI GTCTC 2 cut(s) 33, 208
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 3 cut(s) 218, 287, 419
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 2 cut(s) 373, 738
Bsp1286I GDGCHC 1 cut(s) 739
Bsp13I TCCGGA 1 cut(s) 334
BspACI CCGC 7 cut(s) 126, 162, 230, 243, 284, 412, 420
BspANI GGCC 3 cut(s) 218, 287, 419
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 2 cut(s) 227, 311
BspLI GGNNCC 2 cut(s) 217, 333
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 3 cut(s) 297, 491, 799
BssECI CCNNGG 2 cut(s) 568, 738
BssHII GCGCGC 1 cut(s) 225
Bst6I CTCTTC 2 cut(s) 69, 192
BstAPI GCANNNNNTGC 1 cut(s) 898
BstC8I GCNNGC 2 cut(s) 227, 351
BstDEI CTNAG 1 cut(s) 356
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 2 cut(s) 506, 880
BstFNI CGCG 2 cut(s) 227, 311
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 4 cut(s) 131, 227, 229, 311
BstMAI GTCTC 2 cut(s) 33, 208
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 6 cut(s) 89, 137, 224, 443, 515, 898
BstNSI RCATGY 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 815
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 3 cut(s) 192, 737, 738
BstSLI GKGCMC 1 cut(s) 739
BstUI CGCG 2 cut(s) 227, 311
BstV1I GCAGC 3 cut(s) 118, 337, 505
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 218, 287, 419
BtgZI GCGATG 1 cut(s) 853
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 506, 880
BtsIMutI CAGTG 2 cut(s) 792, 811
Cac8I GCNNGC 2 cut(s) 227, 351
CfoI GCGC 4 cut(s) 131, 227, 229, 311
Cfr13I GGNCC 1 cut(s) 216
Cfr9I CCCGGG 1 cut(s) 738
CseI GACGC 2 cut(s) 300, 355
Csp6I GTAC 3 cut(s) 252, 290, 844
CviAII CATG 5 cut(s) 350, 409, 632, 769, 847
CviQI GTAC 3 cut(s) 252, 290, 844
DdeI CTNAG 1 cut(s) 356
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 69, 192
EarI CTCTTC 2 cut(s) 69, 192
EclXI CGGCCG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 208
Eco52I CGGCCG 1 cut(s) 285
Eco88I CYCGRG 2 cut(s) 373, 738
Eco91I GGTNACC 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 551
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 5 cut(s) 353, 412, 635, 772, 850
FaqI GGGAC 1 cut(s) 259
FatI CATG 5 cut(s) 349, 408, 631, 768, 846
FauI CCCGC 2 cut(s) 155, 236
Fnu4HI GCNGC 7 cut(s) 127, 132, 230, 285, 326, 420, 519
FokI GGATG 2 cut(s) 513, 887
Fsp4HI GCNGC 7 cut(s) 127, 132, 230, 285, 326, 420, 519
FspBI CTAG 1 cut(s) 686
GlaI GCGC 4 cut(s) 130, 226, 228, 310
GluI GCNGC 7 cut(s) 127, 132, 230, 285, 326, 420, 519
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 3 cut(s) 218, 287, 419
HapII CCGG 3 cut(s) 193, 335, 739
HgaI GACGC 2 cut(s) 300, 355
HhaI GCGC 4 cut(s) 131, 227, 229, 311
Hin1II CATG 5 cut(s) 353, 412, 635, 772, 850
Hin6I GCGC 4 cut(s) 129, 225, 227, 309
HinP1I GCGC 4 cut(s) 129, 225, 227, 309
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 3 cut(s) 209, 592, 721
HpaII CCGG 3 cut(s) 193, 335, 739
HphI GGTGA 2 cut(s) 182, 721
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 5 cut(s) 98, 208, 569, 720, 747
Hpy188III TCNNGA 5 cut(s) 335, 365, 584, 639, 725
Hpy8I GTNNAC 1 cut(s) 712
Hpy99I CGWCG 7 cut(s) 151, 154, 277, 280, 283, 316, 349
HpyAV CCTTC 5 cut(s) 49, 160, 409, 436, 567
HpyCH4IV ACGT 2 cut(s) 258, 816
HpyCH4V TGCA 4 cut(s) 174, 611, 853, 901
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 137, 224, 443, 515, 898
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 258, 816
Hsp92II CATG 5 cut(s) 353, 412, 635, 772, 850
HspAI GCGC 4 cut(s) 129, 225, 227, 309
Kpn2I TCCGGA 1 cut(s) 334
LmnI GCTCC 2 cut(s) 322, 700
Lsp1109I GCAGC 3 cut(s) 118, 337, 505
LweI GCATC 1 cut(s) 862
MaeI CTAG 1 cut(s) 686
MaeII ACGT 2 cut(s) 258, 816
MaeIII GTNAC 6 cut(s) 188, 259, 484, 576, 763, 808
MboII GAAGA 2 cut(s) 56, 209
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 4 cut(s) 54, 400, 551, 694
MlyI GAGTC 1 cut(s) 601
MroI TCCGGA 1 cut(s) 334
MseI TTAA 3 cut(s) 495, 558, 693
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 3 cut(s) 193, 335, 739
MspR9I CCNGG 3 cut(s) 194, 739, 740
Mva1269I GAATGC 1 cut(s) 613
MvnI CGCG 2 cut(s) 227, 311
MwoI GCNNNNNNNGC 6 cut(s) 89, 137, 224, 443, 515, 898
NciI CCSGG 3 cut(s) 194, 739, 740
NlaIII CATG 5 cut(s) 353, 412, 635, 772, 850
NlaIV GGNNCC 2 cut(s) 217, 333
NmuCI GTSAC 5 cut(s) 188, 259, 484, 576, 808
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PauI GCGCGC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 269, 311
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 2 cut(s) 209, 721
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 7 cut(s) 128, 133, 231, 286, 327, 421, 520
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
PshAI GACNNNNGTC 1 cut(s) 815
PspEI GGTNACC 1 cut(s) 763
PspN4I GGNNCC 2 cut(s) 217, 333
PspPI GGNCC 1 cut(s) 216
PteI GCGCGC 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 3 cut(s) 253, 291, 845
RsaNI GTAC 3 cut(s) 252, 290, 844
SaqAI TTAA 3 cut(s) 495, 558, 693
SatI GCNGC 7 cut(s) 127, 132, 230, 285, 326, 420, 519
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 194, 739, 740
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 1 cut(s) 862
SmaI CCCGGG 1 cut(s) 740
SphI GCATGC 1 cut(s) 353
Sse9I AATT 4 cut(s) 54, 400, 551, 694
SsiI CCGC 7 cut(s) 126, 162, 230, 243, 284, 412, 420
SspMI CTAG 1 cut(s) 686
StyD4I CCNGG 3 cut(s) 192, 737, 738
TaiI ACGT 2 cut(s) 261, 819
TaqI TCGA 5 cut(s) 152, 314, 392, 724, 789
TasI AATT 4 cut(s) 54, 400, 551, 694
TauI GCSGC 4 cut(s) 129, 232, 287, 422
TfiI GAWTC 2 cut(s) 209, 721
Tru1I TTAA 3 cut(s) 495, 558, 693
Tru9I TTAA 3 cut(s) 495, 558, 693
TscAI CASTG 2 cut(s) 799, 811
TseFI GTSAC 5 cut(s) 188, 259, 484, 576, 808
TseI GCWGC 3 cut(s) 131, 325, 518
Tsp45I GTSAC 5 cut(s) 188, 259, 484, 576, 808
TspDTI ATGAA 2 cut(s) 620, 785
TspGWI ACGGA 2 cut(s) 269, 278
TspMI CCCGGG 1 cut(s) 738
TspRI CASTG 2 cut(s) 799, 811
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 551
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmaI CCCGGG 1 cut(s) 738
XspI CTAG 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.