Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Reverse (-)

6719207 .. 6722345

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10970.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCGACTGAGAAACCGATTACTACGGAGACTGTTGCTCTCACTGAGAAGAAAATGGACATGTCTTTAGATGAGATTATCAAGATGGAAAAGAGCAATACCAATGTGAATAAGGGCAAGAAACAGAGAGTATTGAATAAAAAGGAGAAATTTAGTGGTGCTGCGAAGAATAGTGCGGTGAAAGCACAGCGTTATATGGACTCTCGGTCTGATGTTAGACAGGGTGCTTTTGCTAAGAAGAGGTCTAATTTCCAAGGAAACCAGTTTCCTGTAACAACAACCGTTGCTCGTAAAGCCGCTTCTGCTACTCCGCGTGGTAGACCTTATAATGGTGGAAGGATGACTAATACGAATCAATCAAGGTTTATTGCTCCACCAGCTCAGAATAGAGCTTCACAAAGAGGGTTTGTCGGAAAGCAGCAGCAGCAGCAAAGGGAGAAGATAGTGCAGCAGCAGGCAAATGGAGGAGGAGGAGGGCAAAGGCAATGGCCTCAGACACTGGATTCTCGGTTTGCAAACATGAAGGAAGAGAGAATGAGAATGAGAAGGTTTGCAGACAATAGAAGCAATGTAGGCAACAATGGAGCTGGATCTCATCAGCAGCAGCGTTCGATGGTCCCGTGGGTGAGAAGAGCTACAAGATTCCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

11.57

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	313
AciI	CCGC	3 cut(s)	176, 297, 311
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	205
AluBI	AGCT	4 cut(s)	380, 392, 587, 635
AluI	AGCT	4 cut(s)	380, 392, 587, 635
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	9 cut(s)	161, 418, 421, 424, 427, 448, 451, 601, 604
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	190, 637
AvaII	GGWCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
BbvI	GCAGC	9 cut(s)	148, 430, 433, 436, 439, 460, 463, 613, 616
BccI	CCATC	2 cut(s)	79, 607
BcoDI	GTCTC	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	253, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	262, 504
Bse3DI	GCAATG	2 cut(s)	491, 574
BseDI	CCNNGG	2 cut(s)	253, 620
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	2 cut(s)	491, 574
BseMII	CTCAG	3 cut(s)	36, 395, 506
BseNI	ACTGG	2 cut(s)	262, 504
BseRI	GAGGAG	3 cut(s)	480, 483, 486
BseXI	GCAGC	9 cut(s)	148, 430, 433, 436, 439, 460, 463, 613, 616
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	590
BspACI	CCGC	3 cut(s)	176, 297, 311
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	3 cut(s)	37, 394, 505
BspFNI	CGCG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	618
BspPI	GGATC	1 cut(s)	598
BspQI	GCTCTTC	1 cut(s)	625
BsrDI	GCAATG	2 cut(s)	491, 574
BsrI	ACTGG	2 cut(s)	262, 504
BssECI	CCNNGG	2 cut(s)	253, 620
BssMI	GATC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	34, 283
Bst6I	CTCTTC	3 cut(s)	233, 522, 625
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	5 cut(s)	9, 45, 234, 381, 492
BstDSI	CCRYGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 293, 302, 377, 424, 427, 573
BstNSI	RCATGY	1 cut(s)	64
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	9 cut(s)	148, 430, 433, 436, 439, 460, 463, 613, 616
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	42, 497
Cac8I	GCNNGC	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	616
CviAII	CATG	2 cut(s)	61, 520
CviJI	RGCY	6 cut(s)	296, 380, 392, 490, 587, 635
CviKI_1	RGCY	6 cut(s)	296, 380, 392, 490, 587, 635
DdeI	CTNAG	5 cut(s)	9, 45, 234, 381, 492
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	3 cut(s)	233, 522, 625
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	3 cut(s)	233, 522, 625
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	64, 523
FaiI	YATR	5 cut(s)	62, 195, 197, 327, 521
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	60, 519
FblI	GTMKAC	1 cut(s)	319
FokI	GGATG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	64, 523
HinfI	GANTC	4 cut(s)	200, 352, 503, 642
HphI	GGTGA	2 cut(s)	190, 637
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	211, 384, 413, 495
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	330, 517, 540
HpyCH4III	ACNGT	2 cut(s)	34, 283
HpyCH4V	TGCA	3 cut(s)	448, 515, 554
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 293, 302, 377, 424, 427, 573
HpyF3I	CTNAG	5 cut(s)	9, 45, 234, 381, 492
Hsp92II	CATG	2 cut(s)	64, 523
Kzo9I	GATC	1 cut(s)	590
LguI	GCTCTTC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	376, 584
LpnPI	CCDG	7 cut(s)	206, 275, 282, 390, 440, 485, 573
Lsp1109I	GCAGC	9 cut(s)	148, 430, 433, 436, 439, 460, 463, 613, 616
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	6 cut(s)	61, 178, 250, 451, 539, 642
MflI	RGATCY	1 cut(s)	590
MluCI	AATT	2 cut(s)	149, 247
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	7 cut(s)	234, 395, 458, 461, 464, 467, 501
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	7 cut(s)	182, 293, 302, 377, 424, 427, 573
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	2 cut(s)	64, 523
NlaIV	GGNNCC	1 cut(s)	618
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PfeI	GAWTC	3 cut(s)	352, 503, 642
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PscI	ACATGT	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	618
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	625
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	1 cut(s)	194
SetI	ASST	8 cut(s)	245, 325, 365, 382, 394, 551, 589, 637
SinI	GGWCC	1 cut(s)	616
Sse9I	AATT	2 cut(s)	149, 247
SsiI	CCGC	3 cut(s)	176, 297, 311
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	34, 283
TaqI	TCGA	1 cut(s)	611
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	149, 247
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	352, 503, 642
TscAI	CASTG	2 cut(s)	49, 504
TseI	GCWGC	9 cut(s)	161, 418, 421, 424, 427, 448, 451, 601, 604
TspDTI	ATGAA	1 cut(s)	536
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	49, 504
VpaK11BI	GGWCC	1 cut(s)	616
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.