Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Forward (+)

12426546 .. 12429461

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGACTGGAACACCACTTATAGCGGAGACCATTGCCCTCACTGAAAAGAAAGTCGCCATGGCTTTAGATGATATTATCAAGTTGGCAAAGAGAAAGACCAATGTGAATAAGGGCAAGAAACCAAGGAGAGAAAAGAACAAAAACCAAAACTTTAATGGTGCTGCGAGAAATAATACCTCTAATGTGCGCCATCATATGAACTCACTTTCTGCTGTTAGACAGGGTGCTGTTGGTAAGAGAAGGTCTAGGTTCCAAGGAATTCAATTTCCTGTAACAACAAACATTGCTCGTAAAGCTTCTACTGCTGCTCCACTCGATTTCCGCGGTAGAGCTTTTAATGGTGGAAGGATGACTAGTGCCAATCAGTCAAGGCTTATTGCTCCACCAGTTCAAAATATATCTGTACAGGCTAGAGTCAACGCAAAGAGGCATGAGGTAGATCAGAAAGTAGAACACAGAGGAGGGAAGAGGAAGACACTGGACTCTCGCTTTGCAAGCATGAAAGAGCAGAGAATGACGATTAACAACTATGGTGTTACAGTGCAAGTTCCAAGATTACCACCATGGGTTAGAGCCAGAAGATTTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

11.87

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	26, 325, 327
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	266, 395
AhlI	ACTAGT	1 cut(s)	356
AluBI	AGCT	2 cut(s)	299, 335
AluI	AGCT	2 cut(s)	299, 335
Alw26I	GTCTC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	164, 308
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	151, 295
BccI	CCATC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	23
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	3 cut(s)	249, 357, 414
BisI	GCNGC	2 cut(s)	165, 309
BlsI	GCNGC	2 cut(s)	166, 310
BmiI	GGNNCC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	5 cut(s)	60, 125, 256, 325, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bse1I	ACTGG	3 cut(s)	13, 389, 486
Bse3DI	GCAATG	2 cut(s)	33, 285
BseDI	CCNNGG	5 cut(s)	60, 125, 256, 325, 566
BseGI	GGATG	1 cut(s)	357
BseMI	GCAATG	2 cut(s)	33, 285
BseNI	ACTGG	3 cut(s)	13, 389, 486
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	151, 295
Bsh1236I	CGCG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	23
Bsp1407I	TGTACA	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	2 cut(s)	60, 566
BspACI	CCGC	3 cut(s)	26, 325, 327
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	33, 285
BsrGI	TGTACA	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	13, 389, 486
BssECI	CCNNGG	5 cut(s)	60, 125, 256, 325, 566
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	4 cut(s)	60, 125, 256, 566
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	499
BstDSI	CCRYGG	3 cut(s)	60, 325, 566
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 305, 498
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	151, 295
BstV2I	GAAGAC	1 cut(s)	482
BtgI	CCRYGG	3 cut(s)	60, 325, 566
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	42, 479, 549
Cac8I	GCNNGC	1 cut(s)	499
CfoI	GCGC	1 cut(s)	192
Cfr42I	CCGCGG	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	61, 434, 502, 567
CviJI	RGCY	6 cut(s)	65, 299, 335, 376, 413, 578
CviKI_1	RGCY	6 cut(s)	65, 299, 335, 376, 413, 578
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	4 cut(s)	60, 125, 256, 566
Eco31I	GGTCTC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	261
EcoT14I	CCWWGG	4 cut(s)	60, 125, 256, 566
ErhI	CCWWGG	4 cut(s)	60, 125, 256, 566
FaeI	CATG	4 cut(s)	64, 437, 505, 570
FaiI	YATR	9 cut(s)	23, 62, 198, 200, 401, 435, 503, 534, 568
FatI	CATG	4 cut(s)	60, 433, 501, 566
FauNDI	CATATG	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	165, 309
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	165, 309
FspBI	CTAG	3 cut(s)	249, 357, 414
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	2 cut(s)	165, 309
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	64, 437, 505, 570
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	417, 485
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	447
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	237, 342
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	497, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 305, 498
Hsp92II	CATG	4 cut(s)	64, 437, 505, 570
HspAI	GCGC	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	316, 388
LpnPI	CCDG	6 cut(s)	209, 285, 395, 402, 467, 592
Lsp1109I	GCAGC	2 cut(s)	151, 295
MaeI	CTAG	3 cut(s)	249, 357, 414
MaeIII	GTNAC	2 cut(s)	274, 538
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	3 cut(s)	481, 487, 594
MluCI	AATT	2 cut(s)	261, 266
MlyI	GAGTC	2 cut(s)	426, 479
MnlI	CCTC	7 cut(s)	50, 190, 423, 430, 455, 458, 465
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	3 cut(s)	156, 339, 525
MspA1I	CMGCKG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	296, 305, 498
NcoI	CCATGG	2 cut(s)	60, 566
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	4 cut(s)	64, 437, 505, 570
NlaIV	GGNNCC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	586
PkrI	GCNGC	2 cut(s)	166, 310
PleI	GAGTC	2 cut(s)	425, 479
PpsI	GAGTC	2 cut(s)	425, 479
PspN4I	GGNNCC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacII	CCGCGG	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	156, 339, 525
SatI	GCNGC	2 cut(s)	165, 309
Sau3AI	GATC	1 cut(s)	442
SchI	GAGTC	2 cut(s)	426, 479
SetI	ASST	6 cut(s)	182, 248, 254, 301, 337, 441
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	2 cut(s)	261, 266
SsiI	CCGC	3 cut(s)	26, 325, 327
SspMI	CTAG	3 cut(s)	249, 357, 414
StyI	CCWWGG	4 cut(s)	60, 125, 256, 566
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	261, 266
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	156, 339, 525
Tru9I	TTAA	3 cut(s)	156, 339, 525
TscAI	CASTG	3 cut(s)	49, 486, 549
TseI	GCWGC	2 cut(s)	164, 308
TspDTI	ATGAA	2 cut(s)	215, 518
TspRI	CASTG	3 cut(s)	49, 486, 549
XapI	RAATTY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	3 cut(s)	249, 357, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.