Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Forward (+)

15560835 .. 15564802

Gene Structure 3968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATCATATGTATCATTGACCTAAGCCCATTTATCTCTCTCATTGGATTCCCAAAATTCAAGACATCCAGCGGTAGCACACCTTTTAACCGGCCTTTCTCTATAAATACCTCCCTGTCTTTCTCTCTCTCTCTTATCTCTGTGTCTCCCCAAAGCCCTAACCCTAATTTCGTACAATATCTCCGCTCGATTCACGATTCGCAATCGAATTTCTGCGCTCCAATAACCGGGAAAATGGCGACAAAACCACTTACAACTGAAGCAATTGCTCTTACAGAGAAGAAGATGGACATGACATTGGAGGATATCATTAAAATGTCGAAAGTTGCTCCCAAGGGTAAGAACCAGCGGAGAGCTTCGAATAAATCTCAGAATTTTGCAAAGGTTGCTGCTCAAGATAAACCAACAAAGCTGCGGCGCTTTATGGACTCAAGATCTTCCATTAGACAGGGGGTTCTAGCTCAGAGAAGGTCAAATTTTCAGAGAAACCAATTCCCCATAGCAGCTGAGGCTGCGCGAAGGGCAGCAGTTGCTCCTCCTCGCAATAGAGCTTTTAATCGTAACCGGGTGCCCAACTGGAAACCAAGGGCTGGTGCACCATTTGATCAAAGAAGGGTTGCAAATGTTGGCTTTGGTAGTAAGCTACCACTGCCGCAGCAGCAGCAGCATCAGCACCCTCGGCAGCAAGAGAATGCACTTCCTAAGCAGAGGCCTCAAACACTCGATTTGCTGTTTGCAAACATGAAGGAGCAGAGGATGAAAGCGCAACCACGCCAGAACAATGGCGTACAGCGCACCAATAGGGGTGGCCAGCAGAGGCCCCCTTGGGGAAGAGGCGGACGGTTTGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

285

Amino Acids

32.02

Weight (kDa)

11.81

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	517
AciI	CCGC	6 cut(s)	72, 184, 349, 415, 653, 837
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	4 cut(s)	56, 208, 373, 475
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	174, 789
AfiI	CCNNNNNNNGG	3 cut(s)	227, 590, 827
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	6 cut(s)	356, 412, 461, 506, 551, 643
AluI	AGCT	6 cut(s)	356, 412, 461, 506, 551, 643
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	594
AoxI	GGCC	4 cut(s)	92, 710, 808, 818
ApaLI	GTGCAC	1 cut(s)	594
ApoI	RAATTY	4 cut(s)	56, 208, 373, 475
AspLEI	GCGC	5 cut(s)	218, 420, 517, 766, 795
AspS9I	GGNCC	1 cut(s)	819
AsuC2I	CCSGG	2 cut(s)	229, 566
AsuII	TTCGAA	1 cut(s)	359
BaeGI	GKGCMC	2 cut(s)	573, 598
BalI	TGGCCA	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	598
BbvCI	CCTCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	280
BclI	TGATCA	2 cut(s)	3, 604
BcnI	CCSGG	2 cut(s)	229, 566
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	421
BglII	AGATCT	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	229, 566
BmgT120I	GGNCC	1 cut(s)	819
BmiI	GGNNCC	2 cut(s)	570, 821
BmrFI	CCNGG	2 cut(s)	229, 566
BmsI	GCATC	1 cut(s)	676
Bpu10I	CCTNAGC	3 cut(s)	23, 507, 702
Bpu14I	TTCGAA	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	378, 415
BpuMI	CCSGG	2 cut(s)	229, 566
BsaJI	CCNNGG	4 cut(s)	333, 584, 677, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 590, 827
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	581
BseDI	CCNNGG	4 cut(s)	333, 584, 677, 824
BseGI	GGATG	2 cut(s)	65, 762
BseLI	CCNNNNNNNGG	3 cut(s)	227, 590, 827
BseMII	CTCAG	3 cut(s)	383, 476, 498
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	525, 528
BseSI	GKGCMC	2 cut(s)	573, 598
Bsh1236I	CGCG	1 cut(s)	517
BshFI	GGCC	4 cut(s)	94, 712, 810, 820
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	3 cut(s)	91, 228, 565
BslI	CCNNNNNNNGG	3 cut(s)	227, 590, 827
BsmAI	GTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	4 cut(s)	94, 712, 810, 820
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	573, 598
Bsp143I	GATC	3 cut(s)	3, 434, 604
BspACI	CCGC	6 cut(s)	72, 184, 349, 415, 653, 837
BspANI	GGCC	4 cut(s)	94, 712, 810, 820
BspCNI	CTCAG	3 cut(s)	382, 475, 499
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	570, 821
BspT104I	TTCGAA	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	568
BsrBI	CCGCTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	4 cut(s)	333, 584, 677, 824
BssMI	GATC	3 cut(s)	3, 434, 604
BssT1I	CCWWGG	3 cut(s)	333, 584, 824
Bst4CI	ACNGT	1 cut(s)	843
Bst6I	CTCTTC	1 cut(s)	826
BstAPI	GCANNNNNTGC	2 cut(s)	386, 530
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	23, 369, 462, 507, 702
BstF5I	GGATG	2 cut(s)	65, 762
BstFNI	CGCG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	5 cut(s)	218, 420, 517, 766, 795
BstKTI	GATC	3 cut(s)	6, 437, 607
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	3, 434, 604
BstSCI	CCNGG	2 cut(s)	227, 564
BstSLI	GKGCMC	2 cut(s)	573, 598
BstUI	CGCG	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	94, 712, 810, 820
BtsCI	GGATG	2 cut(s)	65, 762
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	812
CfoI	GCGC	5 cut(s)	218, 420, 517, 766, 795
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	173, 788
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	2 cut(s)	292, 742
CviQI	GTAC	2 cut(s)	173, 788
DdeI	CTNAG	5 cut(s)	23, 369, 462, 507, 702
DpnI	GATC	3 cut(s)	5, 436, 606
DpnII	GATC	3 cut(s)	3, 434, 604
EaeI	YGGCCR	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
EciI	GGCGGA	1 cut(s)	852
Eco130I	CCWWGG	3 cut(s)	333, 584, 824
Eco147I	AGGCCT	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	819
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	333, 584, 824
ErhI	CCWWGG	3 cut(s)	333, 584, 824
FaeI	CATG	2 cut(s)	295, 745
FaiI	YATR	7 cut(s)	8, 10, 104, 293, 425, 500, 743
FatI	CATG	2 cut(s)	291, 741
FauNDI	CATATG	1 cut(s)	8
FbaI	TGATCA	2 cut(s)	3, 604
FokI	GGATG	2 cut(s)	52, 769
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	5 cut(s)	217, 419, 516, 765, 794
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	4 cut(s)	94, 712, 810, 820
HapII	CCGG	3 cut(s)	91, 228, 565
HhaI	GCGC	5 cut(s)	218, 420, 517, 766, 795
Hin1II	CATG	2 cut(s)	295, 745
Hin6I	GCGC	5 cut(s)	216, 418, 515, 764, 793
HinP1I	GCGC	5 cut(s)	216, 418, 515, 764, 793
HinfI	GANTC	4 cut(s)	48, 190, 197, 428
HpaII	CCGG	3 cut(s)	91, 228, 565
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	3 cut(s)	372, 465, 483
Hpy188III	TCNNGA	4 cut(s)	61, 194, 395, 432
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	4 cut(s)	462, 513, 606, 739
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4V	TGCA	5 cut(s)	380, 596, 620, 695, 737
HpyF3I	CTNAG	5 cut(s)	23, 369, 462, 507, 702
Hsp92II	CATG	2 cut(s)	295, 745
HspAI	GCGC	5 cut(s)	216, 418, 515, 764, 793
Ksp22I	TGATCA	2 cut(s)	3, 604
Kzo9I	GATC	3 cut(s)	3, 434, 604
LmnI	GCTCC	4 cut(s)	223, 334, 538, 748
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	3 cut(s)	5, 436, 606
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	3 cut(s)	3, 434, 604
MboII	GAAGA	4 cut(s)	292, 295, 429, 843
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	2 cut(s)	573, 598
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	7 cut(s)	56, 166, 208, 264, 373, 475, 491
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	1 cut(s)	422
Mox20I	TGGCCA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	3 cut(s)	87, 312, 555
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	810
MspA1I	CMGCKG	3 cut(s)	72, 349, 506
MspI	CCGG	3 cut(s)	91, 228, 565
MspR9I	CCNGG	2 cut(s)	229, 566
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	697
MvnI	CGCG	1 cut(s)	517
NciI	CCSGG	2 cut(s)	229, 566
NdeI	CATATG	1 cut(s)	8
NdeII	GATC	3 cut(s)	3, 434, 604
NlaIII	CATG	2 cut(s)	295, 745
NlaIV	GGNNCC	2 cut(s)	570, 821
NmeAIII	GCCGAG	1 cut(s)	658
NspV	TTCGAA	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	712
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	3 cut(s)	48, 190, 197
PflMI	CCANNNNNTGG	1 cut(s)	590
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	570, 821
PspPI	GGNCC	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	174, 789
RsaNI	GTAC	2 cut(s)	173, 788
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	87, 312, 555
Sau3AI	GATC	3 cut(s)	3, 434, 604
Sau96I	GGNCC	1 cut(s)	819
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	229, 566
SduI	GDGCHC	2 cut(s)	573, 598
SfaNI	GCATC	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	393, 430
SmoI	CTYRAG	2 cut(s)	393, 430
Sse9I	AATT	7 cut(s)	56, 166, 208, 264, 373, 475, 491
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	6 cut(s)	72, 184, 349, 415, 653, 837
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	2 cut(s)	227, 564
StyI	CCWWGG	3 cut(s)	333, 584, 824
TaaI	ACNGT	1 cut(s)	843
TaqI	TCGA	5 cut(s)	188, 206, 320, 359, 723
TasI	AATT	7 cut(s)	56, 166, 208, 264, 373, 475, 491
TauI	GCSGC	2 cut(s)	418, 655
TfiI	GAWTC	3 cut(s)	48, 190, 197
Tru1I	TTAA	3 cut(s)	87, 312, 555
Tru9I	TTAA	3 cut(s)	87, 312, 555
TscAI	CASTG	1 cut(s)	654
TspDTI	ATGAA	2 cut(s)	758, 773
TspRI	CASTG	1 cut(s)	654
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	594
XapI	RAATTY	4 cut(s)	56, 208, 373, 475
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.