RchiOBHm_Chr7g0194701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007231
Physical Location & Seq
Reverse (-)
12710578 .. 12714447
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17411

Sequence Viewer

Length: 564 bp
ATGGACATGGCATTAGATGACATTATTAAAATGGCCAAAGTTGCTCCCAAGGGTAAGAAGCAACGGAGGGTTTCGAACAAAAGTCAGACTTTTCTTAAGGGCACTGCTCAAGATAAACCAACAAAGCTACGTCGCTTTATGGACACAAGATCATCCCTTAGACAGGGGGTTCTGGCTCAGAGAAGGTCAAACTTCCAGGGGAACCAATTCCCGATTGCAACTGAGGCTGCTCGGAAGGCAGCAGTTGTTCCTCTTCGCAATAGAGCTTTTAATCGTAACAGGGTGCCTAACTGGAAACCAAGGGCTGGTGCTCCTAATCAGAGAAGGGCTGGAAATGTTGGCTTTGGCACCAAGCTTTCCCCACAGCAGCAGCCGCAGCAGCGTCAGCAGCAGCAAGAGAATGTAGTTGCTAATCAGAGGCCTCAAACACTTGATTTGCTGTTTGCAAACATGAAGGAGCAAAGGATGAGGGCCCAACCACCACACCAGAACAATGCCGTACCACAACGTAATAGGGGCCAGCCAAGGCTCCCTTGGGGAAGAGGCGGGCGATTTGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYTT

Protein Analysis

187

Amino Acids

21.33

Weight (kDa)

12.0

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 283, 347
AccB7I CCANNNNNTGG 1 cut(s) 305
AciI CCGC 2 cut(s) 374, 546
AcoI YGGCCR 1 cut(s) 33
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 163, 305
AflII CTTAAG 1 cut(s) 95
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 3 cut(s) 127, 266, 355
AluI AGCT 3 cut(s) 127, 266, 355
Alw21I GWGCWC 1 cut(s) 313
AoxI GGCC 4 cut(s) 33, 419, 471, 517
ApaI GGGCCC 1 cut(s) 475
ApeKI GCWGC 8 cut(s) 227, 239, 367, 370, 376, 379, 388, 391
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 471, 472, 517
AsuII TTCGAA 1 cut(s) 74
BaeGI GKGCMC 2 cut(s) 104, 475
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 283, 347
BanII GRGCYC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 8 cut(s) 214, 251, 379, 382, 388, 391, 400, 403
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 9 cut(s) 228, 240, 368, 371, 374, 377, 380, 389, 392
BlsI GCNGC 9 cut(s) 229, 241, 369, 372, 375, 378, 381, 390, 393
Bme1390I CCNGG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 471, 472, 517
BmiI GGNNCC 6 cut(s) 203, 285, 349, 473, 518, 530
BmrFI CCNGG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 5 cut(s) 48, 196, 299, 524, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 305
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 5 cut(s) 48, 196, 299, 524, 533
BseGI GGATG 2 cut(s) 152, 471
BseLI CCNNNNNNNGG 2 cut(s) 163, 305
BseMII CTCAG 2 cut(s) 191, 213
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 2 cut(s) 104, 475
BseXI GCAGC 8 cut(s) 214, 251, 379, 382, 388, 391, 400, 403
BshFI GGCC 4 cut(s) 35, 421, 473, 519
BshNI GGYRCC 2 cut(s) 283, 347
BsiHKAI GWGCWC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 163, 305
BsnI GGCC 4 cut(s) 35, 421, 473, 519
Bsp119I TTCGAA 1 cut(s) 74
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 3 cut(s) 104, 313, 475
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 2 cut(s) 374, 546
BspANI GGCC 4 cut(s) 35, 421, 473, 519
BspCNI CTCAG 2 cut(s) 190, 214
BspLI GGNNCC 6 cut(s) 203, 285, 349, 473, 518, 530
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 2 cut(s) 283, 347
BspTI CTTAAG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 48, 196, 299, 524, 533
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 4 cut(s) 48, 299, 524, 533
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 2 cut(s) 258, 535
BstAFI CTTAAG 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 521, 548
BstDEI CTNAG 3 cut(s) 158, 177, 222
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 152, 471
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 8 cut(s) 41, 224, 236, 373, 376, 379, 385, 388
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstSLI GKGCMC 2 cut(s) 104, 475
BstV1I GCAGC 8 cut(s) 214, 251, 379, 382, 388, 391, 400, 403
BsuRI GGCC 4 cut(s) 35, 421, 473, 519
BtsCI GGATG 2 cut(s) 152, 471
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 521, 548
Cfr13I GGNCC 3 cut(s) 471, 472, 517
CseI GACGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 500
CviAII CATG 2 cut(s) 7, 451
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 3 cut(s) 158, 177, 222
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 258, 535
EarI CTCTTC 2 cut(s) 258, 535
Eco130I CCWWGG 4 cut(s) 48, 299, 524, 533
Eco147I AGGCCT 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 4 cut(s) 48, 299, 524, 533
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 4 cut(s) 48, 299, 524, 533
FaeI CATG 2 cut(s) 10, 454
FaiI YATR 3 cut(s) 8, 140, 452
FalI AAGNNNNNCTT 4 cut(s) 73, 105, 517, 549
FatI CATG 2 cut(s) 6, 450
FauI CCCGC 1 cut(s) 539
Fnu4HI GCNGC 9 cut(s) 228, 240, 368, 371, 374, 377, 380, 389, 392
FokI GGATG 2 cut(s) 139, 478
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 9 cut(s) 228, 240, 368, 371, 374, 377, 380, 389, 392
GluI GCNGC 9 cut(s) 228, 240, 368, 371, 374, 377, 380, 389, 392
HaeIII GGCC 4 cut(s) 35, 421, 473, 519
HgaI GACGC 1 cut(s) 371
Hin1II CATG 2 cut(s) 10, 454
HindIII AAGCTT 1 cut(s) 353
Hpy188I TCNGA 5 cut(s) 87, 180, 234, 321, 417
Hpy188III TCNNGA 2 cut(s) 110, 211
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 4 cut(s) 177, 229, 318, 448
HpyCH4IV ACGT 2 cut(s) 130, 508
HpyCH4V TGCA 2 cut(s) 218, 446
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 224, 236, 373, 376, 379, 385, 388
HpyF3I CTNAG 3 cut(s) 158, 177, 222
HpySE526I ACGT 2 cut(s) 130, 508
Hsp92II CATG 2 cut(s) 10, 454
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 4 cut(s) 49, 316, 457, 534
Lsp1109I GCAGC 8 cut(s) 214, 251, 379, 382, 388, 391, 400, 403
MaeII ACGT 2 cut(s) 130, 508
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 2 cut(s) 245, 552
MhlI GDGCHC 3 cut(s) 104, 313, 475
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 7 cut(s) 60, 217, 261, 411, 432, 462, 536
Mox20I TGGCCA 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 27, 96, 270
Msp20I TGGCCA 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 8 cut(s) 41, 224, 236, 373, 376, 379, 385, 388
NdeII GATC 1 cut(s) 149
NlaIII CATG 2 cut(s) 10, 454
NlaIV GGNNCC 6 cut(s) 203, 285, 349, 473, 518, 530
NspV TTCGAA 1 cut(s) 74
PceI AGGCCT 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 9 cut(s) 229, 241, 369, 372, 375, 378, 381, 390, 393
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 6 cut(s) 203, 285, 349, 473, 518, 530
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 3 cut(s) 471, 472, 517
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SaqAI TTAA 3 cut(s) 27, 96, 270
SatI GCNGC 9 cut(s) 228, 240, 368, 371, 374, 377, 380, 389, 392
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 3 cut(s) 471, 472, 517
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 3 cut(s) 104, 313, 475
SetI ASST 6 cut(s) 129, 133, 188, 268, 357, 511
SfuI TTCGAA 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 95, 108
SmoI CTYRAG 2 cut(s) 95, 108
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 2 cut(s) 374, 546
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 4 cut(s) 48, 299, 524, 533
TaiI ACGT 2 cut(s) 133, 511
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 206
TauI GCSGC 1 cut(s) 376
Tru1I TTAA 3 cut(s) 27, 96, 270
Tru9I TTAA 3 cut(s) 27, 96, 270
TscAI CASTG 1 cut(s) 109
TseI GCWGC 8 cut(s) 227, 239, 367, 370, 376, 379, 388, 391
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 305
Vha464I CTTAAG 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.