Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Forward (+)

24789474 .. 24792152

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1108200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGACATGACATTGGAGGATATCATTAAAATGTCGAAAGTTGCTCCCAAGGGTAAGAACCAGCGGAGAGCTTCGAATAAATCTCAGAATTTTGCAAAGGTTGCTGCTCAAGATAAACCAACAAAGCTGCGGCGCTTTATGGACTCAAGATCTTCCATTAGACAGGGGGTTCTAGCTCAGAGAAGGTCAAATTTTCAGAGAAACCAATTCCCCATAGCAGCTGAGGCTGCGCGAAAGGCAGCAGTTGCTCCTCCTCGCAATAGAGCTTTTAATCGTAACCGGGTGCCCAACTGGAAACCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

102

Amino Acids

11.62

Weight (kDa)

12.0

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	1 cut(s)	232
AciI	CCGC	2 cut(s)	64, 130
AcsI	RAATTY	2 cut(s)	88, 190
AluBI	AGCT	5 cut(s)	71, 127, 176, 221, 266
AluI	AGCT	5 cut(s)	71, 127, 176, 221, 266
ApeKI	GCWGC	5 cut(s)	104, 127, 218, 227, 239
ApoI	RAATTY	2 cut(s)	88, 190
AspLEI	GCGC	2 cut(s)	135, 232
AsuC2I	CCSGG	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	91, 114, 214, 230, 251
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	136
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	6 cut(s)	105, 128, 131, 219, 228, 240
BlsI	GCNGC	6 cut(s)	106, 129, 132, 220, 229, 241
Bme1390I	CCNGG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	93, 130
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	48, 299
Bse1I	ACTGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	48, 299
BseMII	CTCAG	3 cut(s)	98, 191, 213
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	240, 243
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	5 cut(s)	91, 114, 214, 230, 251
Bsh1236I	CGCG	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	2 cut(s)	64, 130
BspCNI	CTCAG	3 cut(s)	97, 190, 214
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	48, 299
BssMI	GATC	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	48, 299
BstAPI	GCANNNNNTGC	2 cut(s)	101, 245
BstBI	TTCGAA	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	84, 177, 222
BstFNI	CGCG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 232
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 224, 227, 236, 245
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	5 cut(s)	91, 114, 214, 230, 251
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
CfoI	GCGC	2 cut(s)	135, 232
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	6 cut(s)	71, 127, 176, 221, 227, 266
CviKI_1	RGCY	6 cut(s)	71, 127, 176, 221, 227, 266
DdeI	CTNAG	3 cut(s)	84, 177, 222
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	48, 299
Eco32I	GATATC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	48, 299
ErhI	CCWWGG	2 cut(s)	48, 299
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 140, 215
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	6 cut(s)	105, 128, 131, 219, 228, 240
Fsp4HI	GCNGC	6 cut(s)	105, 128, 131, 219, 228, 240
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	134, 231
GluI	GCNGC	6 cut(s)	105, 128, 131, 219, 228, 240
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	2 cut(s)	135, 232
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	2 cut(s)	133, 230
HinP1I	GCGC	2 cut(s)	133, 230
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	87, 180, 198
Hpy188III	TCNNGA	2 cut(s)	110, 147
HpyAV	CCTTC	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 224, 227, 236, 245
HpyF3I	CTNAG	3 cut(s)	84, 177, 222
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	2 cut(s)	133, 230
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	49, 253
LpnPI	CCDG	4 cut(s)	74, 149, 277, 293
Lsp1109I	GCAGC	5 cut(s)	91, 114, 214, 230, 251
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	144
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	88, 190, 206
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	10, 217, 261, 264
MseI	TTAA	2 cut(s)	27, 270
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	64, 221
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	101, 224, 227, 236, 245
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	74
PkrI	GCNGC	6 cut(s)	106, 129, 132, 220, 229, 241
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	27, 270
SatI	GCNGC	6 cut(s)	105, 128, 131, 219, 228, 240
Sau3AI	GATC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	73, 102, 129, 178, 188, 223, 268, 305
SfuI	TTCGAA	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	108, 145
SmoI	CTYRAG	2 cut(s)	108, 145
Sse9I	AATT	3 cut(s)	88, 190, 206
SsiI	CCGC	2 cut(s)	64, 130
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	48, 299
TaqI	TCGA	2 cut(s)	35, 74
TasI	AATT	3 cut(s)	88, 190, 206
TauI	GCSGC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	27, 270
Tru9I	TTAA	2 cut(s)	27, 270
TseI	GCWGC	5 cut(s)	104, 127, 218, 227, 239
XapI	RAATTY	2 cut(s)	88, 190
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.