Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Forward (+)

24792154 .. 24793464

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1108300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTTGGCTTTGGTAACAAGTCCCGTACATCTACCACTGCCGCAGCAGCAGCAGCATCAGCACCCTCGGCAGCAAGAGAATGCACTTCCTAAGCAGAGGCCTCAAACACTCGATTTGCTGTTTGCAAACATGAAGGAGCAGAGGATGAGAGCGCAACCACGCCAGAACAATGGCGTACCACGCACCAATAGGGGTGGCCAGCAGAGGCCCCCTTGGGGAAGAGGCGGACGGTTTGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

81

Amino Acids

9.22

Weight (kDa)

12.0

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 225
AcoI	YGGCCR	1 cut(s)	196
AfaI	GTAC	2 cut(s)	27, 177
AfiI	CCNNNNNNNGG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	98, 196, 206
ApeKI	GCWGC	5 cut(s)	43, 46, 49, 52, 70
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	55, 58, 61, 64, 82
BisI	GCNGC	6 cut(s)	41, 44, 47, 50, 53, 71
BlsI	GCNGC	6 cut(s)	42, 45, 48, 51, 54, 72
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	209
BmsI	GCATC	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	65, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	65, 212
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseXI	GCAGC	5 cut(s)	55, 58, 61, 64, 82
BshFI	GGCC	3 cut(s)	100, 198, 208
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	100, 198, 208
BspACI	CCGC	2 cut(s)	41, 225
BspANI	GGCC	3 cut(s)	100, 198, 208
BspLI	GGNNCC	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	65, 212
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 49, 52, 58, 67, 180
BstV1I	GCAGC	5 cut(s)	55, 58, 61, 64, 82
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	100, 198, 208
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	26, 176
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	8, 100, 198, 208
CviKI_1	RGCY	4 cut(s)	8, 100, 198, 208
CviQI	GTAC	2 cut(s)	26, 176
DdeI	CTNAG	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	133
FaiI	YATR	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	6 cut(s)	41, 44, 47, 50, 53, 71
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	6 cut(s)	41, 44, 47, 50, 53, 71
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	6 cut(s)	41, 44, 47, 50, 53, 71
HaeIII	GGCC	3 cut(s)	100, 198, 208
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	83, 125
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 49, 52, 58, 67, 180
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	176, 212
Lsp1109I	GCAGC	5 cut(s)	55, 58, 61, 64, 82
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	198
MnlI	CCTC	6 cut(s)	75, 90, 111, 135, 198, 215
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	6 cut(s)	46, 49, 52, 58, 67, 180
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	209
NmeAIII	GCCGAG	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	100
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	6 cut(s)	42, 45, 48, 51, 54, 72
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	207
RsaI	GTAC	2 cut(s)	27, 177
RsaNI	GTAC	2 cut(s)	26, 176
SatI	GCNGC	6 cut(s)	41, 44, 47, 50, 53, 71
Sau96I	GGNCC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	64
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	2 cut(s)	41, 225
StuI	AGGCCT	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	111
TauI	GCSGC	1 cut(s)	43
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	5 cut(s)	43, 46, 49, 52, 70
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.