Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015513.1

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Reverse (-)

25278 .. 26443

Gene Structure 1166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015513.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ctgctctctaattcgatggcggccggtaaaccccttacaactgaggccattgctcttacagagaagaagatggacatggcattagatgacattattaaaatggccaaagttgctcccaagggtaagaagcaacggagggtttcgaacaaaagtcagacttttcttaagggcactgctcaagataaaccaacaaagctacgtcgctttatggagacaagatcatcccttagacagggggttctggctcagagaaggtcaaacttccaggggaaccaattcccaattgcaactgaggctgctcggaaggcagcagttgttcctcttcgcaatagagcttttaatcgtaacagggtgcctaactggaaaccaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

124

Amino Acids

13.99

Weight (kDa)

11.78

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	2 cut(s)	21, 102
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflII	CTTAAG	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	196, 335
AluI	AGCT	2 cut(s)	196, 335
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	3 cut(s)	21, 45, 102
ApeKI	GCWGC	2 cut(s)	296, 308
Asp700I	GAANNNNTTC	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	283, 320
BccI	CCATC	2 cut(s)	10, 64
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	3 cut(s)	21, 297, 309
BlsI	GCNGC	3 cut(s)	22, 298, 310
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	272, 354
BmrFI	CCNGG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	117, 265, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	3 cut(s)	117, 265, 368
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	33, 260, 282
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	173
BseX3I	CGGCCG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	283, 320
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	23, 47, 104
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	23, 47, 104
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	3 cut(s)	23, 47, 104
BspCNI	CTCAG	3 cut(s)	34, 259, 283
BspLI	GGNNCC	2 cut(s)	272, 354
BspT104I	TTCGAA	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	117, 265, 368
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	117, 368
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	42, 227, 246, 291
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	218
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 293, 305
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	283, 320
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	23, 47, 104
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	23
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	23, 47, 104, 196, 245, 296, 335
CviKI_1	RGCY	7 cut(s)	23, 47, 104, 196, 245, 296, 335
DdeI	CTNAG	4 cut(s)	42, 227, 246, 291
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	21, 102
EagI	CGGCCG	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	117, 368
Eco52I	CGGCCG	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	117, 368
ErhI	CCWWGG	2 cut(s)	117, 368
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	77, 209
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	21, 297, 309
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	21, 297, 309
GluI	GCNGC	3 cut(s)	21, 297, 309
HaeIII	GGCC	3 cut(s)	23, 47, 104
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	79
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	156, 249, 303
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	246, 298
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 293, 305
HpyF3I	CTNAG	4 cut(s)	42, 227, 246, 291
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	37, 218, 227, 251, 278, 334, 346
Lsp1109I	GCAGC	2 cut(s)	283, 320
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	76, 79, 314
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	3 cut(s)	10, 275, 282
MluNI	TGGCCA	1 cut(s)	104
MnlI	CCTC	4 cut(s)	37, 129, 286, 330
Mox20I	TGGCCA	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	96, 165, 339
Msp20I	TGGCCA	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	110, 293, 305
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	272, 354
NspV	TTCGAA	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	22, 298, 310
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	272, 354
SaqAI	TTAA	3 cut(s)	96, 165, 339
SatI	GCNGC	3 cut(s)	21, 297, 309
Sau3AI	GATC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	5 cut(s)	198, 202, 257, 337, 374
SfuI	TTCGAA	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	164, 177
SmoI	CTYRAG	2 cut(s)	164, 177
Sse9I	AATT	3 cut(s)	10, 275, 282
SsiI	CCGC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	117, 368
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	14, 143
TasI	AATT	3 cut(s)	10, 275, 282
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	96, 165, 339
Tru9I	TTAA	3 cut(s)	96, 165, 339
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	296, 308
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.