Prupe.5G120800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12057985 .. 12062370
4386 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G120800.1

Sequence Viewer

Length: 621 bp
ATGGCGACTAAACCACTTACAACTGAAACAATTGCTCTGACTGAGAAGAAGATGGACATGACATTAGATGACATTATTAAAATGTCGAAAGTTGCTCCAAAGGGTAAGAAGCAGCAGCGAAGGGCTTCGAATAAAGCCCAGAATTTTGTAAAAGGTGCTGCTCAAGATAAACCAGCAAAGCTGCGGCGCTTTATGGACGCAAGATCTTCCATTAGACAGGGGGTTCTAGCTCAGAGAAGGTCAAATTTCCAGGGGAACCAATTTCCCATTGCAGCTGAGGCTGCACGAAAGGCAGCAGTTGCTCCTCTTCGCAATAGAGCTTTTAATCGTAACCGGGTACCTAACTGGAAAGCAAGGGTTGGTGCTCCAATTCTTCAGAGAAGGGCTGGAAATGTTGGCTACGGTACTAAGCTGCCACTTCCGCAACAGCAGCAGCAGCAGCTTCGGCAGCAAGAGAATGCACTTCCTAAGCAGAGGCCTCAAACACTCGATTTGCTCTTTGCAAACATGAAGGAGCAAAGGATGAGGGCCCAACCACGCCAGAACAATGCCGTACCCCGCAACATTAGGGGTGTCCAGCAGAGGCCCCCTTGGGGAAGAGGCGGACGATTTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

23.35

Weight (kDa)

12.0

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 4 cut(s) 184, 422, 559, 603
AcsI RAATTY 2 cut(s) 142, 244
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 3 cut(s) 339, 406, 555
AfiI CCNNNNNNNGG 1 cut(s) 593
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 6 cut(s) 181, 230, 275, 320, 412, 442
AluI AGCT 6 cut(s) 181, 230, 275, 320, 412, 442
Alw21I GWGCWC 1 cut(s) 367
AoxI GGCC 3 cut(s) 476, 528, 584
ApaI GGGCCC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 142, 244
Asp700I GAANNNNTTC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 3 cut(s) 528, 529, 585
AsuC2I CCSGG 1 cut(s) 335
AsuII TTCGAA 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 532
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 276
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 251, 335
BmgT120I GGNCC 3 cut(s) 528, 529, 585
BmiI GGNNCC 4 cut(s) 257, 339, 530, 587
BmrFI CCNGG 2 cut(s) 251, 335
Bpu10I CCTNAGC 2 cut(s) 276, 468
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 250, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 250, 590
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 33, 245, 267
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 3 cut(s) 478, 530, 586
BshNI GGYRCC 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 593
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 3 cut(s) 478, 530, 586
Bsp119I TTCGAA 1 cut(s) 128
Bsp120I GGGCCC 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 367, 532
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 4 cut(s) 184, 422, 559, 603
BspANI GGCC 3 cut(s) 478, 530, 586
BspCNI CTCAG 3 cut(s) 34, 244, 268
BspLI GGNNCC 4 cut(s) 257, 339, 530, 587
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 250, 590
BssMI GATC 1 cut(s) 203
BssT1I CCWWGG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 2 cut(s) 312, 592
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 128
BstDEI CTNAG 5 cut(s) 42, 231, 276, 408, 468
BstF5I GGATG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 206
BstMBI GATC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 249, 333
BstSLI GKGCMC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 3 cut(s) 478, 530, 586
BtsCI GGATG 1 cut(s) 528
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 3 cut(s) 528, 529, 585
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 338, 405, 554
CviAII CATG 2 cut(s) 58, 508
CviQI GTAC 3 cut(s) 338, 405, 554
DdeI CTNAG 5 cut(s) 42, 231, 276, 408, 468
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 312, 592
EarI CTCTTC 2 cut(s) 312, 592
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 590
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 528, 585
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 590
FaeI CATG 2 cut(s) 61, 511
FaiI YATR 3 cut(s) 59, 194, 509
FatI CATG 2 cut(s) 57, 507
FauI CCCGC 1 cut(s) 566
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 1 cut(s) 532
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 3 cut(s) 478, 530, 586
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 61, 511
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HpaII CCGG 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 39, 234, 378
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 114, 231, 375, 505
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4V TGCA 4 cut(s) 272, 284, 461, 503
HpyF3I CTNAG 5 cut(s) 42, 231, 276, 408, 468
Hsp92II CATG 2 cut(s) 61, 511
HspAI GCGC 1 cut(s) 187
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 4 cut(s) 100, 307, 370, 514
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MboII GAAGA 6 cut(s) 58, 61, 198, 299, 365, 609
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 2 cut(s) 367, 532
MluCI AATT 5 cut(s) 30, 142, 244, 260, 369
MnlI CCTC 7 cut(s) 271, 315, 468, 489, 519, 576, 593
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 2 cut(s) 78, 324
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 251, 335
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 251
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 203
NlaIII CATG 2 cut(s) 61, 511
NlaIV GGNNCC 4 cut(s) 257, 339, 530, 587
NspV TTCGAA 1 cut(s) 128
PceI AGGCCT 1 cut(s) 478
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 257, 339, 530, 587
PspOMI GGGCCC 1 cut(s) 528
PspPI GGNCC 3 cut(s) 528, 529, 585
PsuI RGATCY 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 339, 406, 555
RsaNI GTAC 3 cut(s) 338, 405, 554
SaqAI TTAA 2 cut(s) 78, 324
Sau3AI GATC 1 cut(s) 203
Sau96I GGNCC 3 cut(s) 528, 529, 585
ScrFI CCNGG 2 cut(s) 251, 335
SduI GDGCHC 2 cut(s) 367, 532
SetI ASST 9 cut(s) 157, 183, 232, 242, 277, 322, 343, 414, 444
SfuI TTCGAA 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 5 cut(s) 30, 142, 244, 260, 369
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 4 cut(s) 184, 422, 559, 603
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 2 cut(s) 249, 333
StyI CCWWGG 1 cut(s) 590
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 3 cut(s) 86, 128, 489
TasI AATT 5 cut(s) 30, 142, 244, 260, 369
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 78, 324
Tru9I TTAA 2 cut(s) 78, 324
TspDTI ATGAA 1 cut(s) 524
XapI RAATTY 2 cut(s) 142, 244
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.