Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007231

Physical Location & Seq

Genomic Coordinates Forward (+)

2740470 .. 2744452

Gene Structure 3983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGGCCGTTAAACCCCTTACAACTGAGGCTATAGCTCTTACAGAGAAGAAGATGGACATGGCATTAGACGATATTATTAAAATGGCCAAAGTTGCTCCCAAGGGTAAGAAGCAGCAGAGGGTTTCGAACAAAAGTCAGACTTTTGCTAAAGGCATTACTCAAGACAAACCAACAAAGCTGCGTCGCTATATGGACTCAAGATCAACCATGAGACAGGGAGTTCTGGCTCAGAGAAGATCAAACTTCCAGGGGAACCAATTCCCGGTTGCAACTGAGGCTGCACGGAAGGCAGCAGTCGTTCCTTTTCGCAATAGAGCTTTTAATCGTAACCAGGTGCCTAACTGGAAACCAAGGGCTGGAGCTCCTATTCAGAGAAGGGCTGGAAATGTTGGCTTTGGGACCAAGCTTCCCCCACAACAGCAGCAGTGGCATCGGCAGCAAGAGAATGTAGTTGCTAATCAGAAGCCTCAAACACTTGATCTGCTGTTTGCAAACATGAAAGAGCAACGGATGAGGGCTCAACCACCACACCAGAACATTGCTGCACCACAACGTAATAGGGGCCGGCCAAGGCTCCCTTGGGGAAGAGGCGGGCGATTTGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYTT

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

11.9

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G10970 AT4G23910 AT4G23910
fragaria_vesca	FvH4_5g04680
malus_domestica	MD06G1108200.v1.1 MD06G1108300.v1.1
prunus_persica	Prupe.5G120800_v2.0.a1
pyrus_communis	pycom06g10170
rosa_chinensis	RchiOBHm_Chr7g0194701
rosa_laevigata	RLG00000004180
rosa_multiflora	Rmu_sc0012757.1_g000005 Rmu_sc0015513.1_g000004
rosa_roxburghii	Rroxscaffold_3G00261140
rosa_rugosa	Rorug07G0017400
rosa_samantha	Rh7AG144900 Rh7BG144900 Rh7CG148700 Rh7DG146100
rosa_wichuraiana	Rw7G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	2 cut(s)	5, 594
AcoI	YGGCCR	3 cut(s)	6, 87, 569
AfiI	CCNNNNNNNGG	2 cut(s)	265, 359
AjnI	CCWGG	2 cut(s)	249, 333
AluBI	AGCT	5 cut(s)	38, 181, 320, 365, 409
AluI	AGCT	5 cut(s)	38, 181, 320, 365, 409
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	4 cut(s)	6, 87, 565, 569
ApeKI	GCWGC	7 cut(s)	115, 181, 281, 293, 424, 439, 545
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	402, 565
AsuC2I	CCSGG	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	367, 523
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	7 cut(s)	127, 168, 268, 305, 436, 451, 532
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	251, 335
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	8 cut(s)	6, 116, 182, 282, 294, 425, 440, 546
BlsI	GCNGC	8 cut(s)	7, 117, 183, 283, 295, 426, 441, 547
Bme1390I	CCNGG	3 cut(s)	251, 266, 335
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	402, 565
BmiI	GGNNCC	5 cut(s)	257, 339, 403, 566, 578
BmrFI	CCNGG	3 cut(s)	251, 266, 335
BmsI	GCATC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	147, 184
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	5 cut(s)	102, 250, 353, 572, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 359
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	251, 335
BseDI	CCNNGG	5 cut(s)	102, 250, 353, 572, 581
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	265, 359
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	18, 245, 267
BseNI	ACTGG	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	7 cut(s)	127, 168, 268, 305, 436, 451, 532
BsgI	GTGCAG	2 cut(s)	267, 531
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	8, 89, 567, 571
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	266, 568
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	265, 359
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	8, 89, 567, 571
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	367, 523
Bsp143I	GATC	3 cut(s)	203, 239, 481
BspACI	CCGC	2 cut(s)	5, 594
BspANI	GGCC	4 cut(s)	8, 89, 567, 571
BspCNI	CTCAG	3 cut(s)	19, 244, 268
BspLI	GGNNCC	5 cut(s)	257, 339, 403, 566, 578
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	5 cut(s)	102, 250, 353, 572, 581
BssMI	GATC	3 cut(s)	203, 239, 481
BssT1I	CCWWGG	4 cut(s)	102, 353, 572, 581
Bst2UI	CCWGG	2 cut(s)	251, 335
Bst6I	CTCTTC	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	569, 596
BstDEI	CTNAG	3 cut(s)	27, 231, 276
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	206, 242, 484
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	203, 239, 481
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 278, 290, 430, 439
BstNI	CCWGG	2 cut(s)	251, 335
BstSCI	CCNGG	3 cut(s)	249, 264, 333
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	7 cut(s)	127, 168, 268, 305, 436, 451, 532
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	8, 89, 567, 571
BtsCI	GGATG	1 cut(s)	519
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	569, 596
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	402, 565
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	333
CviAII	CATG	3 cut(s)	61, 211, 499
DdeI	CTNAG	3 cut(s)	27, 231, 276
DpnI	GATC	3 cut(s)	205, 241, 483
DpnII	GATC	3 cut(s)	203, 239, 481
EaeI	YGGCCR	3 cut(s)	6, 87, 569
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
Ecl136II	GAGCTC	1 cut(s)	365
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	4 cut(s)	102, 353, 572, 581
Eco24I	GRGCYC	2 cut(s)	367, 523
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	249, 333
EcoT14I	CCWWGG	4 cut(s)	102, 353, 572, 581
EcoT38I	GRGCYC	2 cut(s)	367, 523
ErhI	CCWWGG	4 cut(s)	102, 353, 572, 581
FaeI	CATG	3 cut(s)	64, 214, 502
FaiI	YATR	6 cut(s)	35, 62, 192, 194, 212, 500
FalI	AAGNNNNNCTT	4 cut(s)	127, 159, 565, 597
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	60, 210, 498
FauI	CCCGC	1 cut(s)	587
Fnu4HI	GCNGC	8 cut(s)	6, 116, 182, 282, 294, 425, 440, 546
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	2 cut(s)	367, 523
FseI	GGCCGGCC	1 cut(s)	571
Fsp4HI	GCNGC	8 cut(s)	6, 116, 182, 282, 294, 425, 440, 546
GluI	GCNGC	8 cut(s)	6, 116, 182, 282, 294, 425, 440, 546
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	8, 89, 567, 571
HapII	CCGG	2 cut(s)	266, 568
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	64, 214, 502
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	266, 568
Hpy188I	TCNGA	4 cut(s)	141, 234, 375, 465
Hpy188III	TCNNGA	2 cut(s)	164, 201
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	2 cut(s)	283, 372
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	4 cut(s)	272, 284, 494, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 278, 290, 430, 439
HpyF3I	CTNAG	3 cut(s)	27, 231, 276
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	3 cut(s)	64, 214, 502
KroI	GCCGGC	1 cut(s)	567
KroNI	GCCGGC	1 cut(s)	569
Kzo9I	GATC	3 cut(s)	203, 239, 481
LmnI	GCTCC	4 cut(s)	103, 362, 370, 582
Lsp1109I	GCAGC	7 cut(s)	127, 168, 268, 305, 436, 451, 532
LweI	GCATC	1 cut(s)	442
MabI	ACCWGGT	1 cut(s)	333
MaeII	ACGT	1 cut(s)	556
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	205, 241, 483
MboI	GATC	3 cut(s)	203, 239, 481
MboII	GAAGA	4 cut(s)	61, 64, 249, 600
MhlI	GDGCHC	2 cut(s)	367, 523
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	260, 607
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	6 cut(s)	22, 114, 271, 480, 510, 584
Mox20I	TGGCCA	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	12, 81, 324, 610
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	2 cut(s)	266, 568
MspR9I	CCNGG	3 cut(s)	251, 266, 335
MvaI	CCWGG	2 cut(s)	251, 335
MwoI	GCNNNNNNNGC	5 cut(s)	95, 278, 290, 430, 439
NaeI	GCCGGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	203, 239, 481
NgoMIV	GCCGGC	1 cut(s)	567
NlaIII	CATG	3 cut(s)	64, 214, 502
NlaIV	GGNNCC	5 cut(s)	257, 339, 403, 566, 578
NspV	TTCGAA	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	8 cut(s)	7, 117, 183, 283, 295, 426, 441, 547
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	249, 333
PspGI	CCWGG	2 cut(s)	249, 333
PspN4I	GGNNCC	5 cut(s)	257, 339, 403, 566, 578
PspPI	GGNCC	2 cut(s)	402, 565
RigI	GGCCGGCC	1 cut(s)	571
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	4 cut(s)	12, 81, 324, 610
SatI	GCNGC	8 cut(s)	6, 116, 182, 282, 294, 425, 440, 546
Sau3AI	GATC	3 cut(s)	203, 239, 481
Sau96I	GGNCC	2 cut(s)	402, 565
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	251, 266, 335
SduI	GDGCHC	2 cut(s)	367, 523
SetI	ASST	7 cut(s)	40, 183, 322, 339, 367, 411, 559
SexAI	ACCWGGT	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	162, 199
SmoI	CTYRAG	2 cut(s)	162, 199
Sse9I	AATT	2 cut(s)	260, 607
SsiI	CCGC	2 cut(s)	5, 594
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	3 cut(s)	249, 264, 333
StyI	CCWWGG	4 cut(s)	102, 353, 572, 581
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	260, 607
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	12, 81, 324, 610
Tru9I	TTAA	4 cut(s)	12, 81, 324, 610
TscAI	CASTG	1 cut(s)	434
TseI	GCWGC	7 cut(s)	115, 181, 281, 293, 424, 439, 545
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	2 cut(s)	301, 526
TspRI	CASTG	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.