Rh7AG144900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007231
Physical Location & Seq
Reverse (-)
11631719 .. 11634980
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG144900.1

Sequence Viewer

Length: 495 bp
ATGCAGAACAAAAGTCTGACTTTTCTTAAGGGCACTGCTCAAGATAAAACAACAAAGCTACGTCGATTTATGGACACAAGATCATCCCTTAGACAGGGGGTTCTGGCTCAGAGAAGGTCAAACTTCCAGGGGAACCAATTCCCGATTGCAACTGAGGCTGCTCGGAAGGCAGCAGTTGTTCCTCTTCGCAATAGAGCTTTTAATCGTAACAGGGTGCCTAACTGGAAACCAAGGGCTGGTGCTCCTAATCAGAGAAGGGCTGGAAATGTTGGCTTTGGTACCAAGCTTTCCCCACAGCAACAGCCGCAGCAGCGTCAGCAGCAGCAAGAGAATGTAGTTGCTAATCAGAGGCCTCAAACACTTGATTTGCTGTTTGCAAACATGAAGGAGCAAAGGATGAGGGCCCAACCACCACGCCAGAACAATGCCGTACCACAACGTAATAGGGGCCAGCCAAGGCTCCCTTGGGGAAGAGGCGGGCGATTTGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYTT

Protein Analysis

164

Amino Acids

18.78

Weight (kDa)

12.0

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 2 cut(s) 214, 278
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 2 cut(s) 305, 477
AfaI GTAC 2 cut(s) 280, 432
AfiI CCNNNNNNNGG 2 cut(s) 94, 236
AflII CTTAAG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 58, 197, 286
AluI AGCT 3 cut(s) 58, 197, 286
Alw21I GWGCWC 1 cut(s) 244
AoxI GGCC 3 cut(s) 350, 402, 448
ApaI GGGCCC 1 cut(s) 406
ApeKI GCWGC 6 cut(s) 158, 170, 307, 310, 319, 322
Asp700I GAANNNNTTC 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 402, 403, 448
BaeGI GKGCMC 2 cut(s) 35, 406
BanI GGYRCC 2 cut(s) 214, 278
BanII GRGCYC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 6 cut(s) 145, 182, 319, 322, 331, 334
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 7 cut(s) 159, 171, 305, 308, 311, 320, 323
BlsI GCNGC 7 cut(s) 160, 172, 306, 309, 312, 321, 324
Bme1390I CCNGG 1 cut(s) 128
BmgT120I GGNCC 3 cut(s) 402, 403, 448
BmiI GGNNCC 6 cut(s) 134, 216, 280, 404, 449, 461
BmrFI CCNGG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 127, 230, 455, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 236
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 4 cut(s) 127, 230, 455, 464
BseGI GGATG 2 cut(s) 83, 402
BseLI CCNNNNNNNGG 2 cut(s) 94, 236
BseMII CTCAG 2 cut(s) 122, 144
BseNI ACTGG 1 cut(s) 227
BseSI GKGCMC 2 cut(s) 35, 406
BseXI GCAGC 6 cut(s) 145, 182, 319, 322, 331, 334
BshFI GGCC 3 cut(s) 352, 404, 450
BshNI GGYRCC 2 cut(s) 214, 278
BsiHKAI GWGCWC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 94, 236
BsnI GGCC 3 cut(s) 352, 404, 450
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 35, 244, 406
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 2 cut(s) 305, 477
BspANI GGCC 3 cut(s) 352, 404, 450
BspCNI CTCAG 2 cut(s) 121, 145
BspLI GGNNCC 6 cut(s) 134, 216, 280, 404, 449, 461
BspT107I GGYRCC 2 cut(s) 214, 278
BspTI CTTAAG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 4 cut(s) 127, 230, 455, 464
BssMI GATC 1 cut(s) 80
BssT1I CCWWGG 3 cut(s) 230, 455, 464
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 189, 466
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 452, 479
BstDEI CTNAG 3 cut(s) 89, 108, 153
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 83, 402
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 6 cut(s) 155, 167, 304, 310, 316, 319
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSLI GKGCMC 2 cut(s) 35, 406
BstV1I GCAGC 6 cut(s) 145, 182, 319, 322, 331, 334
BsuRI GGCC 3 cut(s) 352, 404, 450
BtsCI GGATG 2 cut(s) 83, 402
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 452, 479
Cfr13I GGNCC 3 cut(s) 402, 403, 448
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 279, 431
CviAII CATG 1 cut(s) 382
CviQI GTAC 2 cut(s) 279, 431
DdeI CTNAG 3 cut(s) 89, 108, 153
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 189, 466
EarI CTCTTC 2 cut(s) 189, 466
Eco130I CCWWGG 3 cut(s) 230, 455, 464
Eco147I AGGCCT 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 3 cut(s) 230, 455, 464
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 3 cut(s) 230, 455, 464
FaeI CATG 1 cut(s) 385
FaiI YATR 2 cut(s) 71, 383
FalI AAGNNNNNCTT 3 cut(s) 36, 448, 480
FatI CATG 1 cut(s) 381
FauI CCCGC 1 cut(s) 470
Fnu4HI GCNGC 7 cut(s) 159, 171, 305, 308, 311, 320, 323
FokI GGATG 2 cut(s) 70, 409
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 7 cut(s) 159, 171, 305, 308, 311, 320, 323
GluI GCNGC 7 cut(s) 159, 171, 305, 308, 311, 320, 323
HaeIII GGCC 3 cut(s) 352, 404, 450
HgaI GACGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 284
Hpy188I TCNGA 5 cut(s) 18, 111, 165, 252, 348
Hpy188III TCNNGA 2 cut(s) 41, 142
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 4 cut(s) 108, 160, 249, 379
HpyCH4IV ACGT 2 cut(s) 61, 439
HpyCH4V TGCA 3 cut(s) 4, 149, 377
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 167, 304, 310, 316, 319
HpyF3I CTNAG 3 cut(s) 89, 108, 153
HpySE526I ACGT 2 cut(s) 61, 439
Hsp92II CATG 1 cut(s) 385
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 80
LmnI GCTCC 3 cut(s) 247, 388, 465
Lsp1109I GCAGC 6 cut(s) 145, 182, 319, 322, 331, 334
MaeII ACGT 2 cut(s) 61, 439
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 2 cut(s) 176, 483
MhlI GDGCHC 3 cut(s) 35, 244, 406
MluCI AATT 1 cut(s) 137
MnlI CCTC 6 cut(s) 148, 192, 342, 363, 393, 467
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 27, 201
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 155, 167, 304, 310, 316, 319
NdeII GATC 1 cut(s) 80
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 6 cut(s) 134, 216, 280, 404, 449, 461
PceI AGGCCT 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 7 cut(s) 160, 172, 306, 309, 312, 321, 324
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 6 cut(s) 134, 216, 280, 404, 449, 461
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 3 cut(s) 402, 403, 448
RsaI GTAC 2 cut(s) 280, 432
RsaNI GTAC 2 cut(s) 279, 431
SaqAI TTAA 2 cut(s) 27, 201
SatI GCNGC 7 cut(s) 159, 171, 305, 308, 311, 320, 323
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 3 cut(s) 402, 403, 448
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 3 cut(s) 35, 244, 406
SetI ASST 6 cut(s) 60, 64, 119, 199, 288, 442
SmlI CTYRAG 2 cut(s) 26, 39
SmoI CTYRAG 2 cut(s) 26, 39
Sse9I AATT 1 cut(s) 137
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 2 cut(s) 305, 477
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 3 cut(s) 230, 455, 464
TaiI ACGT 2 cut(s) 64, 442
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 27, 201
Tru9I TTAA 2 cut(s) 27, 201
TscAI CASTG 1 cut(s) 40
TseI GCWGC 6 cut(s) 158, 170, 307, 310, 319, 322
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 236
Vha464I CTTAAG 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.