Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Forward (+)

6777752 .. 6780243

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCGTTTGCTAGAGCAGTGAGAAGACCAATTGGAGTCTTTTATTATAGTGTTAGTAGTAGATTTAGTTCTGGAAATGAGTATTCTACTGTGGCAAGCAAATTCGAAACTTTGTCTCAGTACAAAAGCTCTGTACCGTCTGGTTACACAAGCCTTGTTCGTGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAAGCTCCTCCTGCTGTATCTGACCAAATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGCTTCTTTAGTTGAATGCAATTGGGATCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGGGAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAAGGAATGCTTGCCGTTGCTCAAAATGAAGGGAAAGTTGCTGTTATTGAACTTAACTGTGAGACTGATTTTGTTGCTAGGAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTGCTGGTTGAGAGTAGTTCGCAGCAAGTTTCTGGTGTCTTCCCCTTTGGGCCGGAGCTTTTTGAGGAGTTCAAGCTTAACCTCGATCATCCAAAAGTTAATGGTGAAACAACGGTTTCAAACGCTGTTACAGAAGTAGCTGCAATCATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATCTTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTATAGCTGGGATTGTATCTCTCGAAGTAGAAGGTGAAAATACTCAACTAGAGGCTATTCAGCGTGTAGGCTCAGAACTGGCTATGCATGTTGTAGCAGCAAAGCCTTTGTTTTTAAGCAAAGACCTTGTTTCTTCTGAAGCAATGGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAGTACAGGCAAGAATCAGATGGCGATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTTTGAAGAAGTTGCTCTAATGGAGCAAAAGTTTATTGTGAACGATGCTATAAACATTAAGACACTGGTGGATAATTTGTCCAAGGAGGTAGGTTCTCCAGTGAAGGTTACCGATTTTCTTAGAGTCGAGGTTGGGGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCAGTTGCTCAAACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

395

Amino Acids

43.19

Weight (kDa)

6.23

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	141 - 379	1e-52	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccII	CGCG	1 cut(s)	915
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	101, 172, 671
AcuI	CTGAAG	2 cut(s)	687, 915
AcyI	GRCGYC	2 cut(s)	711, 985
AfaI	GTAC	4 cut(s)	122, 135, 479, 943
AfiI	CCNNNNNNNGG	3 cut(s)	481, 746, 752
AgsI	TTSAA	6 cut(s)	293, 431, 580, 627, 1004, 1154
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	745
AloI	GAACNNNNNNTCC	4 cut(s)	175, 207, 244, 276
AluBI	AGCT	7 cut(s)	129, 200, 491, 565, 583, 647, 764
AluI	AGCT	7 cut(s)	129, 200, 491, 565, 583, 647, 764
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	4 cut(s)	120, 437, 933, 992
AlwI	GGATC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	5 cut(s)	314, 377, 529, 647, 854
ApoI	RAATTY	3 cut(s)	101, 172, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	623, 803
AsuII	TTCGAA	2 cut(s)	105, 356
BbsI	GAAGAC	2 cut(s)	31, 538
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	5 cut(s)	301, 364, 541, 634, 866
BccI	CCATC	1 cut(s)	952
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	4 cut(s)	120, 437, 933, 992
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	4 cut(s)	12, 255, 459, 806
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	5 cut(s)	315, 378, 530, 648, 855
BlsI	GCNGC	5 cut(s)	316, 379, 531, 649, 856
BmcAI	AGTACT	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	1033, 1166
BpiI	GAAGAC	2 cut(s)	31, 538
BpmI	CTGGAG	1 cut(s)	1080
Bpu14I	TTCGAA	2 cut(s)	105, 356
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	2 cut(s)	711, 985
BsaJI	CCNNGG	2 cut(s)	746, 1080
BsaXI	ACNNNNNCTCC	8 cut(s)	175, 205, 244, 274, 651, 681, 1013, 1043
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 746, 752
Bse1I	ACTGG	5 cut(s)	475, 840, 1068, 1097, 1169
Bse3DI	GCAATG	1 cut(s)	906
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	746, 1080
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	3 cut(s)	481, 746, 752
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	4 cut(s)	131, 332, 843, 944
BseNI	ACTGG	5 cut(s)	475, 840, 1068, 1097, 1169
BseRI	GAGGAG	2 cut(s)	192, 587
BseXI	GCAGC	5 cut(s)	301, 364, 541, 634, 866
BseYI	CCCAGC	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	481, 746, 752
BsmAI	GTCTC	4 cut(s)	120, 437, 933, 992
BsmBI	CGTCTC	1 cut(s)	992
BsmI	GAATGC	2 cut(s)	299, 393
BsnI	GGCC	1 cut(s)	559
Bsp119I	TTCGAA	2 cut(s)	105, 356
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	304, 592
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	4 cut(s)	130, 331, 842, 943
BspFNI	CGCG	1 cut(s)	915
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	312
BspT104I	TTCGAA	2 cut(s)	105, 356
BsrDI	GCAATG	1 cut(s)	906
BsrI	ACTGG	5 cut(s)	475, 840, 1068, 1097, 1169
BssECI	CCNNGG	2 cut(s)	746, 1080
BssMI	GATC	2 cut(s)	304, 592
BssNI	GRCGYC	2 cut(s)	711, 985
BssT1I	CCWWGG	1 cut(s)	1080
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	91, 138, 440, 622
BstACI	GRCGYC	2 cut(s)	711, 985
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBI	TTCGAA	2 cut(s)	105, 356
BstC8I	GCNNGC	3 cut(s)	97, 393, 709
BstDEI	CTNAG	6 cut(s)	117, 242, 318, 829, 930, 1118
BstEII	GGTNACC	1 cut(s)	1105
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	2 cut(s)	307, 595
BstMAI	GTCTC	4 cut(s)	120, 437, 933, 992
BstMBI	GATC	2 cut(s)	304, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 503, 1181
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	2 cut(s)	506, 848
BstPI	GGTNACC	1 cut(s)	1105
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	5 cut(s)	301, 364, 541, 634, 866
BstV2I	GAAGAC	2 cut(s)	31, 538
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 1061, 1104
Cac8I	GCNNGC	3 cut(s)	97, 393, 709
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	2 cut(s)	700, 974
Csp6I	GTAC	4 cut(s)	121, 134, 478, 942
CviAII	CATG	3 cut(s)	503, 655, 845
CviQI	GTAC	4 cut(s)	121, 134, 478, 942
DdeI	CTNAG	6 cut(s)	117, 242, 318, 829, 930, 1118
DpnI	GATC	2 cut(s)	306, 594
DpnII	GATC	2 cut(s)	304, 592
Eco130I	CCWWGG	1 cut(s)	1080
Eco57I	CTGAAG	2 cut(s)	687, 915
Eco91I	GGTNACC	1 cut(s)	1105
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoO65I	GGTNACC	1 cut(s)	1105
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	1080
EcoT22I	ATGCAT	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	1080
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	3 cut(s)	506, 658, 848
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	3 cut(s)	502, 654, 844
Fnu4HI	GCNGC	5 cut(s)	315, 378, 530, 648, 855
FokI	GGATG	1 cut(s)	582
Fsp4HI	GCNGC	5 cut(s)	315, 378, 530, 648, 855
FspBI	CTAG	4 cut(s)	12, 255, 459, 806
GluI	GCNGC	5 cut(s)	315, 378, 530, 648, 855
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	1080
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	2 cut(s)	700, 974
Hin1I	GRCGYC	2 cut(s)	711, 985
Hin1II	CATG	3 cut(s)	506, 658, 848
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	6 cut(s)	36, 226, 919, 952, 1122, 1140
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	623, 803
Hpy166II	GTNNAC	1 cut(s)	1039
Hpy188I	TCNGA	7 cut(s)	196, 217, 321, 832, 895, 957, 1162
Hpy188III	TCNNGA	4 cut(s)	72, 308, 688, 779
Hpy8I	GTNNAC	1 cut(s)	1039
HpyAV	CCTTC	7 cut(s)	316, 377, 404, 782, 974, 1096, 1130
HpyCH4III	ACNGT	4 cut(s)	91, 138, 440, 622
HpyCH4V	TGCA	5 cut(s)	297, 380, 650, 722, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 503, 1181
HpyF3I	CTNAG	6 cut(s)	117, 242, 318, 829, 930, 1118
Hsp92I	GRCGYC	2 cut(s)	711, 985
Hsp92II	CATG	3 cut(s)	506, 658, 848
Kzo9I	GATC	2 cut(s)	304, 592
LmnI	GCTCC	4 cut(s)	205, 265, 562, 1021
Lsp1109I	GCAGC	5 cut(s)	301, 364, 541, 634, 866
LweI	GCATC	2 cut(s)	1033, 1166
MaeI	CTAG	4 cut(s)	12, 255, 459, 806
MaeIII	GTNAC	4 cut(s)	143, 366, 634, 1105
MalI	GATC	2 cut(s)	306, 594
MboI	GATC	2 cut(s)	304, 592
MboII	GAAGA	7 cut(s)	36, 538, 693, 719, 882, 982, 1016
MfeI	CAATTG	2 cut(s)	30, 298
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	6 cut(s)	30, 101, 172, 298, 671, 1072
MlyI	GAGTC	3 cut(s)	45, 235, 1131
Mph1103I	ATGCAT	1 cut(s)	846
MseI	TTAA	8 cut(s)	234, 267, 276, 435, 585, 606, 872, 1056
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	2 cut(s)	30, 298
Mva1269I	GAATGC	2 cut(s)	299, 393
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	3 cut(s)	206, 503, 1181
NdeII	GATC	2 cut(s)	304, 592
NlaIII	CATG	3 cut(s)	506, 658, 848
NmuCI	GTSAC	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	846
NspI	RCATGY	2 cut(s)	506, 848
NspV	TTCGAA	2 cut(s)	105, 356
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PctI	GAATGC	2 cut(s)	299, 393
PfeI	GAWTC	3 cut(s)	919, 952, 1140
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	5 cut(s)	316, 379, 531, 649, 856
PleI	GAGTC	3 cut(s)	44, 234, 1130
PpsI	GAGTC	3 cut(s)	44, 234, 1130
Psp6I	CCWGG	1 cut(s)	745
PspEI	GGTNACC	1 cut(s)	1105
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	557
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	4 cut(s)	122, 135, 479, 943
RsaNI	GTAC	4 cut(s)	121, 134, 478, 942
SaqAI	TTAA	8 cut(s)	234, 267, 276, 435, 585, 606, 872, 1056
SatI	GCNGC	5 cut(s)	315, 378, 530, 648, 855
Sau3AI	GATC	2 cut(s)	304, 592
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	3 cut(s)	45, 235, 1131
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	1033, 1166
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	2 cut(s)	105, 356
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	6 cut(s)	30, 101, 172, 298, 671, 1072
SspMI	CTAG	4 cut(s)	12, 255, 459, 806
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	1080
TaaI	ACNGT	4 cut(s)	91, 138, 440, 622
TaqI	TCGA	6 cut(s)	105, 356, 591, 780, 1125, 1143
TasI	AATT	6 cut(s)	30, 101, 172, 298, 671, 1072
TatI	WGTACW	3 cut(s)	120, 477, 941
TfiI	GAWTC	3 cut(s)	919, 952, 1140
Tru1I	TTAA	8 cut(s)	234, 267, 276, 435, 585, 606, 872, 1056
Tru9I	TTAA	8 cut(s)	234, 267, 276, 435, 585, 606, 872, 1056
TscAI	CASTG	3 cut(s)	24, 1068, 1104
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	5 cut(s)	314, 377, 529, 647, 854
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	4 cut(s)	166, 423, 924, 1179
TspGWI	ACGGA	3 cut(s)	196, 385, 980
TspRI	CASTG	3 cut(s)	24, 1068, 1104
Van91I	CCANNNNNTGG	1 cut(s)	481
XagI	CCTNNNNNAGG	1 cut(s)	744
XapI	RAATTY	3 cut(s)	101, 172, 671
XceI	RCATGY	2 cut(s)	506, 848
XspI	CTAG	4 cut(s)	12, 255, 459, 806
ZrmI	AGTACT	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.