Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Reverse (-)

57193604 .. 57200121

Gene Structure 6518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTTTTGGTGGAGGTGCCAAACGTTCTCTTGGTTCACTACTGAGTATTAGGATGCTTAATGGGTCCTCAACTACAGCTACTGCTGCCAATGGGGGTTTTTGTGTTACGAACACAAGAGTCACAGAGACACAAATTCCTCTAGGACTTGCCGACACCCAATGTGGGTCTGCTGTCTTTCTTCGGAGGTTCAGCGTTGAAGCTTCTGACCATATGAGTCTCATAAAGCAACTGAGGCAGAGAACCAGCGCTCCTATCAAAGATGTCAAGGCTGCTCTCGTTGATTGCAATTGGGAAATCGAGGCTGCACTCAAGGAGTTGAGGAGAAGAGGGAAGGTTTTGGCAACGAAAAAGTCATCAAGAATGGCTTCTGAGGGTTTGCTTGCACTGGCTCACAGTGACAGCAAGGCTGCTCTTATTGAACTCAACTGTGAGACTGACTTTGTTGCTAGAAATGAAATCTTTCAATTCTTGGCCTTAGCTTTGGCAAAGCAAGCATTGTTGCTTGAAGGCTCTTCTCAACAGGTTTCTGGGCTCTTTCCCATTGCCTCTGAACATTTACAGGACTTGAAGTTAAATCTTGAACATCCAAAAATTAGTGGAGAAACAACTGTTCAGAATGCAATTACGGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTCAGAAGAGGATTTGTGATGTCTACTGCTTCACATGGTGTTGTTTCCACGTATCTTCATTCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTTTATCTCTTGAAGTAGAGGATAAGAATTTGGATGCCATTCAGCGCATTGGGTCGGAATTGGCAATGCATGTGGTGGCAGCAAAGCCTTTATTCTTAACAAAGGAACTTGTTTCTACTGATGCGTTAGAGAGTGAACGTGAAATTCTCAAGTCTCAGGCTGAAAGTACGGGCAAATCCCAGATGGCCATAGACAAAATAGTAGAAGGTCGCTTGCGTAAATACTATGAGGAAGTTGTTTTGATGGAACAGAAGTTTATTGTGGACGATTCTGTAAATGTAAAGGTAAATTTTCTTTATCATCTTAAGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

358

Amino Acids

38.98

Weight (kDa)

7.71

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	137 - 348	5e-50	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	686
AclI	AACGTT	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	5 cut(s)	135, 759, 787, 903, 1048
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	1 cut(s)	928
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	165, 737, 743
AflII	CTTAAG	1 cut(s)	1064
AgsI	TTSAA	8 cut(s)	200, 422, 467, 509, 571, 584, 726, 773
AjnI	CCWGG	1 cut(s)	736
AloI	GAACNNNNNNTCC	2 cut(s)	235, 267
AluBI	AGCT	3 cut(s)	80, 203, 482
AluI	AGCT	3 cut(s)	80, 203, 482
Alw26I	GTCTC	4 cut(s)	122, 224, 428, 918
AlwNI	CAGNNNCTG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	2 cut(s)	474, 945
ApeKI	GCWGC	6 cut(s)	86, 272, 305, 410, 638, 839
ApoI	RAATTY	5 cut(s)	135, 759, 787, 903, 1048
Asp700I	GAANNNNTTC	2 cut(s)	367, 462
AspLEI	GCGC	2 cut(s)	251, 807
AspS9I	GGNCC	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	947
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	537
BbvI	GCAGC	6 cut(s)	73, 259, 292, 397, 625, 851
BccI	CCATC	2 cut(s)	937, 997
BciT130I	CCWGG	1 cut(s)	738
BcoDI	GTCTC	4 cut(s)	122, 224, 428, 918
BfaI	CTAG	2 cut(s)	143, 450
BfmI	CTRYAG	2 cut(s)	75, 639
BfoI	RGCGCY	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	1064
BisI	GCNGC	6 cut(s)	87, 273, 306, 411, 639, 840
BlsI	GCNGC	6 cut(s)	88, 274, 307, 412, 640, 841
Bme1390I	CCNGG	1 cut(s)	738
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	738
BmsI	GCATC	3 cut(s)	45, 784, 871
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	2 cut(s)	296, 893
BsaAI	YACGTR	1 cut(s)	714
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 737, 743
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	3 cut(s)	543, 750, 831
BseBI	CCWGG	1 cut(s)	738
BseGI	GGATG	3 cut(s)	60, 586, 799
BseLI	CCNNNNNNNGG	3 cut(s)	165, 737, 743
BseMI	GCAATG	3 cut(s)	543, 750, 831
BseMII	CTCAG	5 cut(s)	35, 224, 363, 679, 929
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	6 cut(s)	73, 259, 292, 397, 625, 851
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	476, 947
BshNI	GGYRCC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	3 cut(s)	165, 737, 743
BsmAI	GTCTC	4 cut(s)	122, 224, 428, 918
BsmFI	GGGAC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	476, 947
Bsp1286I	GDGCHC	1 cut(s)	537
BspANI	GGCC	2 cut(s)	476, 947
BspCNI	CTCAG	5 cut(s)	36, 225, 364, 678, 928
BspLI	GGNNCC	2 cut(s)	19, 67
BspMAI	CTGCAG	1 cut(s)	643
BspQI	GCTCTTC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	1064
BsrDI	GCAATG	3 cut(s)	543, 750, 831
BsrI	ACTGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	3 cut(s)	398, 431, 613
Bst6I	CTCTTC	3 cut(s)	322, 520, 664
BstAFI	CTTAAG	1 cut(s)	1064
BstBAI	YACGTR	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	384, 495, 974
BstDEI	CTNAG	6 cut(s)	44, 233, 372, 478, 665, 915
BstF5I	GGATG	3 cut(s)	60, 586, 799
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	2 cut(s)	251, 807
BstMAI	GTCTC	4 cut(s)	122, 224, 428, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 235, 494
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	2 cut(s)	75, 639
BstV1I	GCAGC	6 cut(s)	73, 259, 292, 397, 625, 851
BsuRI	GGCC	2 cut(s)	476, 947
BtsCI	GGATG	3 cut(s)	60, 586, 799
BtsIMutI	CAGTG	2 cut(s)	386, 403
Cac8I	GCNNGC	3 cut(s)	384, 495, 974
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	251, 807
Cfr13I	GGNCC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	736
Csp6I	GTAC	1 cut(s)	927
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	2 cut(s)	698, 830
CviQI	GTAC	1 cut(s)	927
DdeI	CTNAG	6 cut(s)	44, 233, 372, 478, 665, 915
DraIII	CACNNNGTG	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	3 cut(s)	322, 520, 664
EarI	CTCTTC	3 cut(s)	322, 520, 664
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	2 cut(s)	701, 833
FaiI	YATR	7 cut(s)	213, 215, 224, 699, 831, 950, 987
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	2 cut(s)	697, 829
FauNDI	CATATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	6 cut(s)	87, 273, 306, 411, 639, 840
FokI	GGATG	3 cut(s)	67, 573, 806
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	6 cut(s)	87, 273, 306, 411, 639, 840
FspBI	CTAG	2 cut(s)	143, 450
GlaI	GCGC	2 cut(s)	250, 806
GluI	GCNGC	6 cut(s)	87, 273, 306, 411, 639, 840
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	476, 947
HhaI	GCGC	2 cut(s)	251, 807
Hin1II	CATG	2 cut(s)	701, 833
Hin6I	GCGC	2 cut(s)	249, 805
HinP1I	GCGC	2 cut(s)	249, 805
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	120, 217, 1028
Hpy166II	GTNNAC	4 cut(s)	38, 687, 896, 1024
Hpy188I	TCNGA	7 cut(s)	186, 208, 373, 553, 618, 668, 817
Hpy188III	TCNNGA	3 cut(s)	360, 581, 770
Hpy8I	GTNNAC	4 cut(s)	38, 687, 896, 1024
HpyAV	CCTTC	3 cut(s)	328, 503, 959
HpyCH4III	ACNGT	3 cut(s)	398, 431, 613
HpyCH4IV	ACGT	3 cut(s)	25, 713, 898
HpyCH4V	TGCA	6 cut(s)	288, 308, 386, 623, 641, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 235, 494
HpyF3I	CTNAG	6 cut(s)	44, 233, 372, 478, 665, 915
HpySE526I	ACGT	3 cut(s)	25, 713, 898
Hsp92II	CATG	2 cut(s)	701, 833
HspAI	GCGC	2 cut(s)	249, 805
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	6 cut(s)	73, 259, 292, 397, 625, 851
LweI	GCATC	3 cut(s)	45, 784, 871
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	2 cut(s)	143, 450
MaeII	ACGT	3 cut(s)	25, 713, 898
MaeIII	GTNAC	3 cut(s)	106, 121, 398
MboII	GAAGA	5 cut(s)	173, 339, 507, 681, 710
MfeI	CAATTG	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	947
MluNI	TGGCCA	1 cut(s)	947
MlyI	GAGTC	2 cut(s)	129, 226
MmeI	TCCRAC	1 cut(s)	795
Mox20I	TGGCCA	1 cut(s)	947
Mph1103I	ATGCAT	1 cut(s)	831
MroXI	GAANNNNTTC	2 cut(s)	367, 462
MscI	TGGCCA	1 cut(s)	947
MseI	TTAA	5 cut(s)	60, 575, 660, 857, 1065
Msp20I	TGGCCA	1 cut(s)	947
MspCI	CTTAAG	1 cut(s)	1064
MspR9I	CCNGG	1 cut(s)	738
MunI	CAATTG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	86, 235, 494
NdeI	CATATG	1 cut(s)	213
NlaIII	CATG	2 cut(s)	701, 833
NlaIV	GGNNCC	2 cut(s)	19, 67
NmuCI	GTSAC	2 cut(s)	121, 398
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	1 cut(s)	833
PciSI	GCTCTTC	1 cut(s)	520
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	2 cut(s)	367, 462
PfeI	GAWTC	1 cut(s)	1028
PkrI	GCNGC	6 cut(s)	88, 274, 307, 412, 640, 841
PleI	GAGTC	2 cut(s)	128, 225
PpsI	GAGTC	2 cut(s)	128, 225
Ppu21I	YACGTR	1 cut(s)	714
PpuMI	RGGWCCY	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	19, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	643
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	928
RsaNI	GTAC	1 cut(s)	927
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	5 cut(s)	60, 575, 660, 857, 1065
SatI	GCNGC	6 cut(s)	87, 273, 306, 411, 639, 840
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	129, 226
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	537
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	3 cut(s)	45, 784, 871
SfcI	CTRYAG	2 cut(s)	75, 639
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	3 cut(s)	311, 908, 1064
SmoI	CTYRAG	3 cut(s)	311, 908, 1064
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	2 cut(s)	143, 450
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	398, 431, 613
TaiI	ACGT	3 cut(s)	28, 716, 901
TaqI	TCGA	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	1028
Tru1I	TTAA	5 cut(s)	60, 575, 660, 857, 1065
Tru9I	TTAA	5 cut(s)	60, 575, 660, 857, 1065
TscAI	CASTG	2 cut(s)	393, 403
TseFI	GTSAC	2 cut(s)	121, 398
TseI	GCWGC	6 cut(s)	86, 272, 305, 410, 638, 839
Tsp45I	GTSAC	2 cut(s)	121, 398
TspDTI	ATGAA	2 cut(s)	471, 710
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	393, 403
Vha464I	CTTAAG	1 cut(s)	1064
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	5 cut(s)	135, 759, 787, 903, 1048
XceI	RCATGY	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	686
XmnI	GAANNNNTTC	2 cut(s)	367, 462
XspI	CTAG	2 cut(s)	143, 450
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.