Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Forward (+)

16454046 .. 16461771

Gene Structure 7726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G150500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCATTTCGTGGAGGTGCACAGCGCTCTCTTGGCTCATTCCTGTATAACAGGTTGCTTAACACTAGTTATAGTTCTTCAAGTACTTGTACTGCTTCTGCTGCTGCCAATGGACGTGGTTTTTCAACCTGGGTTTCAAGCAGAAGATCTTCATTTGCTCAAACCACAGAGATCCCAACCTCAATTCCTCTCAAATTTGCCAATACCCAATGTGGGTTTGCTCTTTTTCTAAGAAAGTTCAGCGTGGGAACTTCTTCTTTTTCTTCTTCTGACCAAATGAGCCTTATAAAACAATTGAGGGAGAGAACCAGCGCTCCAATCAAAGACGTCAAGGCCGCTCTCATTGATAGCAATTGGGACATTGAGGCTGCACAGAAGGAATTGAGGAGAAGAGGGAAGGTTTTGGCGTCGAAAAAGTCATCTCGAATGGCTGCTGAGGGTTTGCTGGCATTGGCCCATAGCGAGAGCAAGGCTGCTGTCATTGAACTTAACTGCGAGACTGACTTTGTTGCTCGAAATGATATCTTTCAGCACTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGCTAGTTGAAAGCTCTTCTCAACTCATTTCTGGGGTCTTCCACGTTCCCTCTGAGGATTTGGAGGACTCGAAGTTAAATCTTGAACATCCAAAAGTTAGTGGAGAAATAACTGTTCAGAATGCAATTACAGAAGTAGCTGCAGTGATGGGGGAAAATGTTAAACTTAGAAGGGGTATTGTGATGTCTACAACTTCACACGGTGTTGTTTCTACCTACCTCCATACAAGTCCCCAACCAGGTTTAGGTCGTATTGCTGGAATTTTATCTCTTTCAGTAGAGGACAAAAATTCTCAATTGGATGCTATCCAGCGCGTTGGTTCGCAATTGGCAATGCATGTAGTGGCAGCGAAGCCCTTGTTCTTAACAAAGGAACTTGTTTCTTCTGATGTATTAGAGAGTGAACGTGAAATTCTTAAGTCTCAGGCTGAAAGTACGGGTAAGTCTCAGATGGCCATAGATAAAATTGTAGAAGGTCGCTTGCGTAAATACTATGAGGAAGTTGTTCTTTTGGAGCAGAAGTTTATTATGGACGACACCCTAACTGTAAAGAAACTATTAGAGAATCTATCTATGGAAGTGGGATCACCTGTGAAGATTGAGAGCTTTTTCAGGATGGAAGTGGGAGAAGGAATTCAAAGGCTGGAAGCATCCAGTGCATCGGAAAACTTGGCTCAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

416

Amino Acids

45.21

Weight (kDa)

8.3

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AatII	GACGTC	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	749
AccII	CGCG	1 cut(s)	876
AciI	CCGC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	166, 1153
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	5 cut(s)	194, 822, 850, 972, 1194
AcyI	GRCGYC	2 cut(s)	327, 407
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	3 cut(s)	85, 91, 997
AfeI	AGCGCT	2 cut(s)	26, 313
AfiI	CCNNNNNNNGG	3 cut(s)	213, 800, 806
AflII	CTTAAG	1 cut(s)	977
AgsI	TTSAA	7 cut(s)	81, 126, 138, 485, 572, 647, 1199
AhlI	ACTAGT	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	128, 799
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	5 cut(s)	545, 560, 576, 701, 1167
AluI	AGCT	5 cut(s)	545, 560, 576, 701, 1167
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	3 cut(s)	491, 987, 1011
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	166, 1153
Aor51HI	AGCGCT	2 cut(s)	26, 313
AoxI	GGCC	4 cut(s)	333, 453, 537, 1014
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	7 cut(s)	101, 104, 368, 431, 473, 701, 908
ApoI	RAATTY	5 cut(s)	194, 822, 850, 972, 1194
Asp700I	GAANNNNTTC	4 cut(s)	148, 253, 1065, 1194
AspLEI	GCGC	3 cut(s)	27, 314, 876
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	1140
BaeGI	GKGCMC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	1016
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	7 cut(s)	88, 91, 355, 418, 460, 688, 920
BccI	CCATC	3 cut(s)	703, 1006, 1171
BciT130I	CCWGG	2 cut(s)	130, 801
BcoDI	GTCTC	3 cut(s)	491, 987, 1011
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	2 cut(s)	66, 566
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	2 cut(s)	28, 315
BfrI	CTTAAG	1 cut(s)	977
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	8 cut(s)	102, 105, 336, 369, 432, 474, 702, 909
BlsI	GCNGC	8 cut(s)	103, 106, 337, 370, 433, 475, 703, 910
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	130, 801
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	130, 801
BmsI	GCATC	3 cut(s)	853, 1220, 1229
BpiI	GAAGAC	1 cut(s)	592
Bpu10I	CCTNAGC	3 cut(s)	435, 541, 1236
BsaHI	GRCGYC	2 cut(s)	327, 407
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	298, 328, 1067, 1097
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 800, 806
Bse1I	ACTGG	1 cut(s)	1215
Bse3DI	GCAATG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	130, 801
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	649, 868, 1182, 1211
BseLI	CCNNNNNNNGG	3 cut(s)	213, 800, 806
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	4 cut(s)	426, 606, 998, 1022
BseNI	ACTGG	1 cut(s)	1215
BseRI	GAGGAG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	7 cut(s)	88, 91, 355, 418, 460, 688, 920
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	4 cut(s)	335, 455, 539, 1016
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	371, 777
BslI	CCNNNNNNNGG	3 cut(s)	213, 800, 806
BsmAI	GTCTC	3 cut(s)	491, 987, 1011
BsmFI	GGGAC	2 cut(s)	371, 777
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	4 cut(s)	335, 455, 539, 1016
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	146, 171, 1145
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	4 cut(s)	335, 455, 539, 1016
BspCNI	CTCAG	4 cut(s)	427, 607, 997, 1021
BspFNI	CGCG	1 cut(s)	876
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	2 cut(s)	166, 1153
BspQI	GCTCTTC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	977
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	1 cut(s)	1215
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	146, 171, 1145
BssNI	GRCGYC	2 cut(s)	327, 407
Bst2UI	CCWGG	2 cut(s)	130, 801
Bst4CI	ACNGT	3 cut(s)	676, 764, 1108
Bst6I	CTCTTC	2 cut(s)	385, 583
BstACI	GRCGYC	2 cut(s)	327, 407
BstAFI	CTTAAG	1 cut(s)	977
BstAPI	GCANNNNNTGC	2 cut(s)	562, 1217
BstC8I	GCNNGC	3 cut(s)	447, 558, 1043
BstDEI	CTNAG	8 cut(s)	230, 435, 541, 615, 728, 984, 1008, 1236
BstF5I	GGATG	4 cut(s)	649, 868, 1182, 1211
BstFNI	CGCG	1 cut(s)	876
BstH2I	RGCGCY	2 cut(s)	28, 315
BstHHI	GCGC	3 cut(s)	27, 314, 876
BstKTI	GATC	3 cut(s)	149, 174, 1148
BstMAI	GTCTC	3 cut(s)	491, 987, 1011
BstMBI	GATC	3 cut(s)	146, 171, 1145
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 101, 557, 562, 1217
BstNI	CCWGG	2 cut(s)	130, 801
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	2 cut(s)	128, 799
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	876
BstV1I	GCAGC	7 cut(s)	88, 91, 355, 418, 460, 688, 920
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	2 cut(s)	146, 171
BstXI	CCANNNNNNTGG	1 cut(s)	878
BstYI	RGATCY	2 cut(s)	146, 171
BsuRI	GGCC	4 cut(s)	335, 455, 539, 1016
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	649, 868, 1182, 1211
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	2 cut(s)	711, 1222
Cac8I	GCNNGC	3 cut(s)	447, 558, 1043
CfoI	GCGC	3 cut(s)	27, 314, 876
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	396
CsiI	ACCWGGT	1 cut(s)	799
Csp6I	GTAC	3 cut(s)	84, 90, 996
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	1 cut(s)	899
CviQI	GTAC	3 cut(s)	84, 90, 996
DdeI	CTNAG	8 cut(s)	230, 435, 541, 615, 728, 984, 1008, 1236
DpnI	GATC	3 cut(s)	148, 173, 1147
DpnII	GATC	3 cut(s)	146, 171, 1145
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	2 cut(s)	385, 583
EarI	CTCTTC	2 cut(s)	385, 583
Eco32I	GATATC	1 cut(s)	523
Eco47III	AGCGCT	2 cut(s)	26, 313
EcoRI	GAATTC	1 cut(s)	1194
EcoRII	CCWGG	2 cut(s)	128, 799
EcoRV	GATATC	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	900
FaeI	CATG	1 cut(s)	902
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	2 cut(s)	371, 777
FatI	CATG	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	8 cut(s)	102, 105, 336, 369, 432, 474, 702, 909
FokI	GGATG	4 cut(s)	636, 875, 1189, 1198
Fsp4HI	GCNGC	8 cut(s)	102, 105, 336, 369, 432, 474, 702, 909
FspBI	CTAG	2 cut(s)	66, 566
GlaI	GCGC	3 cut(s)	26, 313, 875
GluI	GCNGC	8 cut(s)	102, 105, 336, 369, 432, 474, 702, 909
HaeII	RGCGCY	2 cut(s)	28, 315
HaeIII	GGCC	4 cut(s)	335, 455, 539, 1016
HgaI	GACGC	1 cut(s)	396
HhaI	GCGC	3 cut(s)	27, 314, 876
Hin1I	GRCGYC	2 cut(s)	327, 407
Hin1II	CATG	1 cut(s)	902
Hin6I	GCGC	3 cut(s)	25, 312, 874
HinP1I	GCGC	3 cut(s)	25, 312, 874
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	2 cut(s)	629, 1126
HphI	GGTGA	1 cut(s)	1140
Hpy166II	GTNNAC	3 cut(s)	20, 750, 965
Hpy188I	TCNGA	6 cut(s)	271, 616, 681, 949, 1011, 1225
Hpy188III	TCNNGA	3 cut(s)	423, 644, 1174
Hpy8I	GTNNAC	3 cut(s)	20, 750, 965
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	5 cut(s)	370, 391, 726, 1028, 1184
HpyCH4III	ACNGT	3 cut(s)	676, 764, 1108
HpyCH4IV	ACGT	4 cut(s)	115, 327, 606, 967
HpyCH4V	TGCA	6 cut(s)	20, 371, 686, 704, 898, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 101, 557, 562, 1217
HpyF3I	CTNAG	8 cut(s)	230, 435, 541, 615, 728, 984, 1008, 1236
HpySE526I	ACGT	4 cut(s)	115, 327, 606, 967
Hsp92I	GRCGYC	2 cut(s)	327, 407
Hsp92II	CATG	1 cut(s)	902
HspAI	GCGC	3 cut(s)	25, 312, 874
Kzo9I	GATC	3 cut(s)	146, 171, 1145
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	319, 1075
Lsp1109I	GCAGC	7 cut(s)	88, 91, 355, 418, 460, 688, 920
LweI	GCATC	3 cut(s)	853, 1220, 1229
MabI	ACCWGGT	1 cut(s)	799
MaeI	CTAG	2 cut(s)	66, 566
MaeII	ACGT	4 cut(s)	115, 327, 606, 967
MalI	GATC	3 cut(s)	148, 173, 1147
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	3 cut(s)	146, 171, 1145
MfeI	CAATTG	4 cut(s)	293, 352, 857, 887
MflI	RGATCY	2 cut(s)	146, 171
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	1016
MluNI	TGGCCA	1 cut(s)	1016
MlyI	GAGTC	1 cut(s)	623
Mox20I	TGGCCA	1 cut(s)	1016
Mph1103I	ATGCAT	1 cut(s)	900
MroXI	GAANNNNTTC	4 cut(s)	148, 253, 1065, 1194
MscI	TGGCCA	1 cut(s)	1016
MseI	TTAA	6 cut(s)	60, 489, 638, 723, 926, 978
Msp20I	TGGCCA	1 cut(s)	1016
MspCI	CTTAAG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	130, 801
MunI	CAATTG	4 cut(s)	293, 352, 857, 887
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	130, 801
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	5 cut(s)	33, 101, 557, 562, 1217
NdeII	GATC	3 cut(s)	146, 171, 1145
NlaIII	CATG	1 cut(s)	902
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	1 cut(s)	902
PciSI	GCTCTTC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	4 cut(s)	148, 253, 1065, 1194
PfeI	GAWTC	1 cut(s)	1126
PkrI	GCNGC	8 cut(s)	103, 106, 337, 370, 433, 475, 703, 910
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	128, 799
PspGI	CCWGG	2 cut(s)	128, 799
PspPI	GGNCC	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	2 cut(s)	146, 171
RsaI	GTAC	3 cut(s)	85, 91, 997
RsaNI	GTAC	3 cut(s)	84, 90, 996
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	6 cut(s)	60, 489, 638, 723, 926, 978
SatI	GCNGC	8 cut(s)	102, 105, 336, 369, 432, 474, 702, 909
Sau3AI	GATC	3 cut(s)	146, 171, 1145
Sau96I	GGNCC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	2 cut(s)	130, 801
SduI	GDGCHC	1 cut(s)	22
SexAI	ACCWGGT	1 cut(s)	799
SfaNI	GCATC	3 cut(s)	853, 1220, 1229
SfcI	CTRYAG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
SpeI	ACTAGT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	66, 566
StyD4I	CCNGG	2 cut(s)	128, 799
TaaI	ACNGT	3 cut(s)	676, 764, 1108
TaiI	ACGT	4 cut(s)	118, 330, 609, 970
TaqI	TCGA	4 cut(s)	410, 424, 514, 632
TatI	WGTACW	2 cut(s)	83, 89
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	1126
Tru1I	TTAA	6 cut(s)	60, 489, 638, 723, 926, 978
Tru9I	TTAA	6 cut(s)	60, 489, 638, 723, 926, 978
TscAI	CASTG	2 cut(s)	711, 1222
TseI	GCWGC	7 cut(s)	101, 104, 368, 431, 473, 701, 908
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	711, 1222
Vha464I	CTTAAG	1 cut(s)	977
VneI	GTGCAC	1 cut(s)	18
XapI	RAATTY	5 cut(s)	194, 822, 850, 972, 1194
XceI	RCATGY	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	749
XmnI	GAANNNNTTC	4 cut(s)	148, 253, 1065, 1194
XspI	CTAG	2 cut(s)	66, 566
ZraI	GACGTC	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.