Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Reverse (-)

56342667 .. 56349211

Gene Structure 6545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG372800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCTTTTGGTGGAGGTGCCAAACGTTCTCTTGGTTCACTACTGAGTATTAGGATGCTTAATGGGTCCTCAACTACAGCTAGTGCTGCCAATGGGGGTTGTTTTTCTAGCTGTGTTTCAAACACAAGGGTCACAGAGACACAAATTCGTCTAGGACTTGCCAACACCCAATGTGGGTCAGCTGTCTTTCTTCGGAGGTTCAGCGTTGAAGCTTCTGACCATATGAGTCTCATAAAGCAACTGAGGCAGAGAACCAGCGCTCCTATCAAAGATGTCAAGGCTGCTCTCGTTGATTGCAATTGGGAAATCGAGGATGCACTCAAGGAGTTGAGGAGAAGAGGGAAGGTTTTGGCAACGAAAAAGTCATCAAGAATGGCTTCTGAGGGTTTGCTTGCACTGGCTCACAGTGACAGCAAGGCTGCTCTTATTGAACTCAACTGTGAGACTGACTTTGTTGCTAGAAATGAAATCTTTCAATTCTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGTTGCTTGAAGGCTCTTCTCAACAGGTTTCTGGGGTCTTTCCCATTGCCTCTGAACATTTACAGGACTTGAAGTTAAATCTTGAACATCCAAAAATTAGTGGAGAAACAACTGTTCAGAATGCAATTACGGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTCAGAAGGGGATTTGTGATGTCTACTGCTTCACATGGTGTTGTTTCCACGTATCTTCATTCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTTTATCTCTTGAAGTAGAGGATAAGAATGCTGAGTTGGATGCCATTCAGCGCATTGGGTCGGAATTGGCAATGCATGTGGTGGCAGCAAAGCCTTTATTCTTAACAAAGGAACTTGTTTCTACTGATGCGTTAGAGAGTGAACGTGAAATTCTCAAGTCTCAGGCTGAAAGTACGGGCAAATCCCAGATGGCCATAGACAAAATAGTAGAAGGTCGCTTGCGTAAATACTATGAGGAAGTTGTTTTGATGGAACAGAAGTTTATTGTGGACGATTCTGTAAATGTAAAGGTAAATTTTCTTTATCATCTTAAGAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

363

Amino Acids

39.52

Weight (kDa)

7.68

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	140 - 353	9.4e-50	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	695
AclI	AACGTT	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	960
AcsI	RAATTY	4 cut(s)	144, 768, 918, 1063
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	943
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
AflII	CTTAAG	1 cut(s)	1079
AgsI	TTSAA	9 cut(s)	120, 209, 431, 476, 518, 580, 593, 735, 782
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	6 cut(s)	80, 111, 182, 212, 491, 506
AluI	AGCT	6 cut(s)	80, 111, 182, 212, 491, 506
Alw26I	GTCTC	4 cut(s)	131, 233, 437, 933
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	2 cut(s)	483, 960
ApeKI	GCWGC	5 cut(s)	86, 281, 419, 647, 854
ApoI	RAATTY	4 cut(s)	144, 768, 918, 1063
Asp700I	GAANNNNTTC	2 cut(s)	376, 471
AspLEI	GCGC	2 cut(s)	260, 822
AspS9I	GGNCC	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	962
BanI	GGYRCC	1 cut(s)	17
BbvI	GCAGC	5 cut(s)	73, 268, 406, 634, 866
BccI	CCATC	2 cut(s)	952, 1012
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	4 cut(s)	131, 233, 437, 933
BfaI	CTAG	4 cut(s)	81, 108, 152, 459
BfmI	CTRYAG	2 cut(s)	75, 648
BfoI	RGCGCY	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	1079
BisI	GCNGC	5 cut(s)	87, 282, 420, 648, 855
BlsI	GCNGC	5 cut(s)	88, 283, 421, 649, 856
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	4 cut(s)	45, 304, 799, 886
Bpu10I	CCTNAGC	1 cut(s)	487
BpuEI	CTTGAG	2 cut(s)	305, 908
BsaAI	YACGTR	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 746, 752
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	3 cut(s)	552, 759, 846
BseBI	CCWGG	1 cut(s)	747
BseGI	GGATG	4 cut(s)	60, 319, 595, 814
BseLI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
BseMI	GCAATG	3 cut(s)	552, 759, 846
BseMII	CTCAG	6 cut(s)	35, 233, 372, 688, 792, 944
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	5 cut(s)	73, 268, 406, 634, 866
BshFI	GGCC	2 cut(s)	485, 962
BshNI	GGYRCC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
BsmAI	GTCTC	4 cut(s)	131, 233, 437, 933
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	2 cut(s)	634, 802
BsnI	GGCC	2 cut(s)	485, 962
BspANI	GGCC	2 cut(s)	485, 962
BspCNI	CTCAG	6 cut(s)	36, 234, 373, 687, 793, 943
BspLI	GGNNCC	2 cut(s)	19, 67
BspMAI	CTGCAG	1 cut(s)	652
BspQI	GCTCTTC	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	1079
BsrDI	GCAATG	3 cut(s)	552, 759, 846
BsrI	ACTGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	407, 440, 622
Bst6I	CTCTTC	2 cut(s)	331, 529
BstAFI	CTTAAG	1 cut(s)	1079
BstBAI	YACGTR	1 cut(s)	723
BstC8I	GCNNGC	3 cut(s)	393, 504, 989
BstDEI	CTNAG	7 cut(s)	44, 242, 381, 487, 674, 801, 930
BstF5I	GGATG	4 cut(s)	60, 319, 595, 814
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 822
BstMAI	GTCTC	4 cut(s)	131, 233, 437, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	2 cut(s)	75, 648
BstV1I	GCAGC	5 cut(s)	73, 268, 406, 634, 866
BsuRI	GGCC	2 cut(s)	485, 962
BtsCI	GGATG	4 cut(s)	60, 319, 595, 814
BtsIMutI	CAGTG	2 cut(s)	395, 412
Cac8I	GCNNGC	3 cut(s)	393, 504, 989
CfoI	GCGC	2 cut(s)	260, 822
Cfr13I	GGNCC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	1 cut(s)	942
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	2 cut(s)	707, 845
CviQI	GTAC	1 cut(s)	942
DdeI	CTNAG	7 cut(s)	44, 242, 381, 487, 674, 801, 930
DraIII	CACNNNGTG	1 cut(s)	710
EaeI	YGGCCR	1 cut(s)	960
Eam1104I	CTCTTC	2 cut(s)	331, 529
EarI	CTCTTC	2 cut(s)	331, 529
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	846
FaeI	CATG	2 cut(s)	710, 848
FaiI	YATR	7 cut(s)	222, 224, 233, 708, 846, 965, 1002
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	706, 844
FauNDI	CATATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	5 cut(s)	87, 282, 420, 648, 855
FokI	GGATG	4 cut(s)	67, 326, 582, 821
Fsp4HI	GCNGC	5 cut(s)	87, 282, 420, 648, 855
FspBI	CTAG	4 cut(s)	81, 108, 152, 459
GlaI	GCGC	2 cut(s)	259, 821
GluI	GCNGC	5 cut(s)	87, 282, 420, 648, 855
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	485, 962
HhaI	GCGC	2 cut(s)	260, 822
Hin1II	CATG	2 cut(s)	710, 848
Hin6I	GCGC	2 cut(s)	258, 820
HinP1I	GCGC	2 cut(s)	258, 820
HindIII	AAGCTT	2 cut(s)	210, 504
HinfI	GANTC	2 cut(s)	226, 1043
Hpy166II	GTNNAC	4 cut(s)	38, 696, 911, 1039
Hpy188I	TCNGA	7 cut(s)	195, 217, 382, 562, 627, 677, 832
Hpy188III	TCNNGA	3 cut(s)	369, 590, 779
Hpy8I	GTNNAC	4 cut(s)	38, 696, 911, 1039
HpyAV	CCTTC	4 cut(s)	337, 512, 672, 974
HpyCH4III	ACNGT	3 cut(s)	407, 440, 622
HpyCH4IV	ACGT	3 cut(s)	25, 722, 913
HpyCH4V	TGCA	6 cut(s)	297, 317, 395, 632, 650, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
HpyF3I	CTNAG	7 cut(s)	44, 242, 381, 487, 674, 801, 930
HpySE526I	ACGT	3 cut(s)	25, 722, 913
Hsp92II	CATG	2 cut(s)	710, 848
HspAI	GCGC	2 cut(s)	258, 820
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	5 cut(s)	73, 268, 406, 634, 866
LweI	GCATC	4 cut(s)	45, 304, 799, 886
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	4 cut(s)	81, 108, 152, 459
MaeII	ACGT	3 cut(s)	25, 722, 913
MaeIII	GTNAC	2 cut(s)	130, 407
MboII	GAAGA	4 cut(s)	182, 348, 516, 719
MfeI	CAATTG	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	9 cut(s)	144, 298, 476, 603, 633, 768, 833, 918, 1063
MluNI	TGGCCA	1 cut(s)	962
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	786, 810
Mox20I	TGGCCA	1 cut(s)	962
Mph1103I	ATGCAT	1 cut(s)	846
MroXI	GAANNNNTTC	2 cut(s)	376, 471
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	5 cut(s)	60, 584, 669, 872, 1080
Msp20I	TGGCCA	1 cut(s)	962
MspA1I	CMGCKG	1 cut(s)	182
MspCI	CTTAAG	1 cut(s)	1079
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	298
Mva1269I	GAATGC	2 cut(s)	634, 802
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
NdeI	CATATG	1 cut(s)	222
NlaIII	CATG	2 cut(s)	710, 848
NlaIV	GGNNCC	2 cut(s)	19, 67
NmuCI	GTSAC	2 cut(s)	130, 407
NsiI	ATGCAT	1 cut(s)	846
NspI	RCATGY	1 cut(s)	848
PciSI	GCTCTTC	1 cut(s)	529
PctI	GAATGC	2 cut(s)	634, 802
PdmI	GAANNNNTTC	2 cut(s)	376, 471
PfeI	GAWTC	1 cut(s)	1043
PkrI	GCNGC	5 cut(s)	88, 283, 421, 649, 856
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	723
PpuMI	RGGWCCY	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	19, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	943
RsaNI	GTAC	1 cut(s)	942
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	5 cut(s)	60, 584, 669, 872, 1080
SatI	GCNGC	5 cut(s)	87, 282, 420, 648, 855
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	747
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	4 cut(s)	45, 304, 799, 886
SfcI	CTRYAG	2 cut(s)	75, 648
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	3 cut(s)	320, 923, 1079
SmoI	CTYRAG	3 cut(s)	320, 923, 1079
Sse9I	AATT	9 cut(s)	144, 298, 476, 603, 633, 768, 833, 918, 1063
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	4 cut(s)	81, 108, 152, 459
StyD4I	CCNGG	1 cut(s)	745
TaaI	ACNGT	3 cut(s)	407, 440, 622
TaiI	ACGT	3 cut(s)	28, 725, 916
TaqI	TCGA	1 cut(s)	309
TasI	AATT	9 cut(s)	144, 298, 476, 603, 633, 768, 833, 918, 1063
TfiI	GAWTC	1 cut(s)	1043
Tru1I	TTAA	5 cut(s)	60, 584, 669, 872, 1080
Tru9I	TTAA	5 cut(s)	60, 584, 669, 872, 1080
TscAI	CASTG	2 cut(s)	402, 412
TseFI	GTSAC	2 cut(s)	130, 407
TseI	GCWGC	5 cut(s)	86, 281, 419, 647, 854
Tsp45I	GTSAC	2 cut(s)	130, 407
TspDTI	ATGAA	2 cut(s)	480, 719
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	402, 412
Vha464I	CTTAAG	1 cut(s)	1079
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	4 cut(s)	144, 768, 918, 1063
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	376, 471
XspI	CTAG	4 cut(s)	81, 108, 152, 459
Zsp2I	ATGCAT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.