Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006157.1

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Forward (+)

42682 .. 48096

Gene Structure 5415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006157.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atggcttttggtggaggtgccaaacgttctcttggttcactactgagtattaggatgcttaatgggtcctcaactacagctagtgctgccaatgggggttgtttttctagctgtgtttcgaacacaagagtcacagggacacaaattcctctaggacttgccgacacccaatgtgggtctgctgtctttcttcggaggttcagcgttgaagcttctgaccatataagtctcataaagcaactgaggcagagaaccagcgctcctatcaaagatgtcaaggcggctctcgttgattgcaattgggaaatcgaggctgcactcaaggagttgaggaggagagggaaggttttggcaacgaaaaagtcatcaagaatcgcttctgagggtttgcttgcactggctcacagtgacagcaaggctgctcttattgaactcaactgtgagactgactttgttgctagaaatgaaatctttcaattcttggccttagctttggcaaagcaagcattgttgcttgaaggctcttctcaacaggtttctggggtctttcccattgcctctgaacatttacaggacttgaagttaaatcttgaacatcccaaaattagtggagaaacaactgttcagaatgcaattacggaagtggctgcagtaatgggggaaaatattaaactcagaagaggatttgtgatgtctactgcttcacatggtgttgtttccacgtatcttcattcaagtccccaaccaggtttgggtcgcattgctggaattttatctcttgaagtagaggataagaatttggatgccattcagcgcattgggtcggaattggcaatgcatgtggtggcagcaaagcctttattcttaacaaaggaacttgtttctactgatgcgttagagagtgaacgtgaaattctcaagtctcaggctgaaagtacgggcaaatcccagatggccatagacaaaatagtagaaggtcgcttgcgtaaatactatgaggaagttgttttgatggaacagaagtttattgtggacgattctgtaaatgtaaagacactattagataagctatctaaggaagtgggatcacctgtgaagattaagagctttttcaggatggaagttggagaaggaattcagaggctagaagaatccagtacatctgaaaatttggctgaggctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

395

Amino Acids

42.69

Weight (kDa)

7.06

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	695
AciI	CCGC	1 cut(s)	281
AclI	AACGTT	1 cut(s)	25
AclWI	GGATC	1 cut(s)	1093
AcoI	YGGCCR	1 cut(s)	954
AcsI	RAATTY	6 cut(s)	144, 768, 796, 912, 1134, 1168
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	937, 1159
AfeI	AGCGCT	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
AgsI	TTSAA	8 cut(s)	209, 431, 476, 518, 580, 593, 735, 782
AjnI	CCWGG	1 cut(s)	745
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	6 cut(s)	80, 111, 212, 491, 1069, 1107
AluI	AGCT	6 cut(s)	80, 111, 212, 491, 1069, 1107
Alw26I	GTCTC	3 cut(s)	233, 437, 927
AlwI	GGATC	1 cut(s)	1093
Aor51HI	AGCGCT	1 cut(s)	259
AoxI	GGCC	2 cut(s)	483, 954
ApeKI	GCWGC	5 cut(s)	86, 314, 419, 647, 848
ApoI	RAATTY	6 cut(s)	144, 768, 796, 912, 1134, 1168
Asp700I	GAANNNNTTC	3 cut(s)	376, 471, 1134
AspLEI	GCGC	2 cut(s)	260, 816
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	1080
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	956
BanI	GGYRCC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	1176
BbvI	GCAGC	5 cut(s)	73, 301, 406, 634, 860
BccI	CCATC	3 cut(s)	946, 1006, 1111
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	233, 437, 927
BfaI	CTAG	5 cut(s)	81, 108, 152, 459, 1145
BfmI	CTRYAG	2 cut(s)	75, 648
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	6 cut(s)	87, 282, 315, 420, 648, 849
BlsI	GCNGC	6 cut(s)	88, 283, 316, 421, 649, 850
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	3 cut(s)	45, 793, 880
Bpu10I	CCTNAGC	2 cut(s)	487, 1176
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	2 cut(s)	305, 902
BsaAI	YACGTR	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 746, 752
Bse1I	ACTGG	2 cut(s)	402, 1155
Bse3DI	GCAATG	3 cut(s)	552, 759, 840
BseBI	CCWGG	1 cut(s)	747
BseGI	GGATG	4 cut(s)	60, 595, 808, 1122
BseLI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
BseMI	GCAATG	3 cut(s)	552, 759, 840
BseMII	CTCAG	6 cut(s)	35, 233, 372, 688, 938, 1167
BseNI	ACTGG	2 cut(s)	402, 1155
BseRI	GAGGAG	2 cut(s)	346, 349
BseXI	GCAGC	5 cut(s)	73, 301, 406, 634, 860
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	485, 956
BshNI	GGYRCC	1 cut(s)	17
BslFI	GGGAC	2 cut(s)	151, 723
BslI	CCNNNNNNNGG	3 cut(s)	174, 746, 752
BsmAI	GTCTC	3 cut(s)	233, 437, 927
BsmFI	GGGAC	2 cut(s)	151, 723
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	485, 956
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	1085
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	485, 956
BspCNI	CTCAG	6 cut(s)	36, 234, 373, 687, 937, 1168
BspLI	GGNNCC	2 cut(s)	19, 67
BspMAI	CTGCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	1093
BspQI	GCTCTTC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	3 cut(s)	552, 759, 840
BsrI	ACTGG	2 cut(s)	402, 1155
BssMI	GATC	1 cut(s)	1085
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	407, 440, 622
Bst6I	CTCTTC	2 cut(s)	529, 673
BstBAI	YACGTR	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	393, 504, 983
BstDEI	CTNAG	8 cut(s)	44, 242, 381, 487, 674, 924, 1074, 1176
BstF5I	GGATG	4 cut(s)	60, 595, 808, 1122
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 816
BstKTI	GATC	1 cut(s)	1088
BstMAI	GTCTC	3 cut(s)	233, 437, 927
BstMBI	GATC	1 cut(s)	1085
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	2 cut(s)	75, 648
BstV1I	GCAGC	5 cut(s)	73, 301, 406, 634, 860
BsuRI	GGCC	2 cut(s)	485, 956
BtsCI	GGATG	4 cut(s)	60, 595, 808, 1122
BtsIMutI	CAGTG	2 cut(s)	395, 412
Cac8I	GCNNGC	3 cut(s)	393, 504, 983
CfoI	GCGC	2 cut(s)	260, 816
Cfr13I	GGNCC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	936, 1158
CspCI	CAANNNNNGTGG	4 cut(s)	589, 624, 822, 857
CviAII	CATG	2 cut(s)	707, 839
CviQI	GTAC	2 cut(s)	936, 1158
DdeI	CTNAG	8 cut(s)	44, 242, 381, 487, 674, 924, 1074, 1176
DpnI	GATC	1 cut(s)	1087
DpnII	GATC	1 cut(s)	1085
DraIII	CACNNNGTG	1 cut(s)	710
EaeI	YGGCCR	1 cut(s)	954
Eam1104I	CTCTTC	2 cut(s)	529, 673
EarI	CTCTTC	2 cut(s)	529, 673
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	1134
EcoRII	CCWGG	1 cut(s)	745
EcoT22I	ATGCAT	1 cut(s)	840
FaeI	CATG	2 cut(s)	710, 842
FaiI	YATR	7 cut(s)	222, 224, 233, 708, 840, 959, 996
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	2 cut(s)	151, 723
FatI	CATG	2 cut(s)	706, 838
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	6 cut(s)	87, 282, 315, 420, 648, 849
FokI	GGATG	4 cut(s)	67, 582, 815, 1129
Fsp4HI	GCNGC	6 cut(s)	87, 282, 315, 420, 648, 849
FspBI	CTAG	5 cut(s)	81, 108, 152, 459, 1145
GlaI	GCGC	2 cut(s)	259, 815
GluI	GCNGC	6 cut(s)	87, 282, 315, 420, 648, 849
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	485, 956
HhaI	GCGC	2 cut(s)	260, 816
Hin1II	CATG	2 cut(s)	710, 842
Hin6I	GCGC	2 cut(s)	258, 814
HinP1I	GCGC	2 cut(s)	258, 814
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	129, 372, 1037, 1151
HphI	GGTGA	1 cut(s)	1080
Hpy166II	GTNNAC	4 cut(s)	38, 696, 905, 1033
Hpy188I	TCNGA	9 cut(s)	195, 217, 382, 562, 627, 677, 826, 1140, 1165
Hpy188III	TCNNGA	4 cut(s)	369, 590, 779, 1114
Hpy8I	GTNNAC	4 cut(s)	38, 696, 905, 1033
HpyAV	CCTTC	4 cut(s)	337, 512, 968, 1124
HpyCH4III	ACNGT	3 cut(s)	407, 440, 622
HpyCH4IV	ACGT	3 cut(s)	25, 722, 907
HpyCH4V	TGCA	6 cut(s)	297, 317, 395, 632, 650, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
HpyF3I	CTNAG	8 cut(s)	44, 242, 381, 487, 674, 924, 1074, 1176
HpySE526I	ACGT	3 cut(s)	25, 722, 907
Hsp92II	CATG	2 cut(s)	710, 842
HspAI	GCGC	2 cut(s)	258, 814
Kzo9I	GATC	1 cut(s)	1085
LguI	GCTCTTC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	5 cut(s)	73, 301, 406, 634, 860
LweI	GCATC	3 cut(s)	45, 793, 880
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	5 cut(s)	81, 108, 152, 459, 1145
MaeII	ACGT	3 cut(s)	25, 722, 907
MaeIII	GTNAC	2 cut(s)	130, 407
MalI	GATC	1 cut(s)	1087
MboI	GATC	1 cut(s)	1085
MboII	GAAGA	6 cut(s)	182, 516, 690, 719, 1108, 1160
MfeI	CAATTG	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	956
MluNI	TGGCCA	1 cut(s)	956
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	804, 1105
Mox20I	TGGCCA	1 cut(s)	956
Mph1103I	ATGCAT	1 cut(s)	840
MroXI	GAANNNNTTC	3 cut(s)	376, 471, 1134
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	5 cut(s)	60, 584, 669, 866, 1101
Msp20I	TGGCCA	1 cut(s)	956
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	86, 244, 503
NdeII	GATC	1 cut(s)	1085
NlaIII	CATG	2 cut(s)	710, 842
NlaIV	GGNNCC	2 cut(s)	19, 67
NmuCI	GTSAC	2 cut(s)	130, 407
NsiI	ATGCAT	1 cut(s)	840
NspI	RCATGY	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	3 cut(s)	376, 471, 1134
PfeI	GAWTC	3 cut(s)	372, 1037, 1151
PkrI	GCNGC	6 cut(s)	88, 283, 316, 421, 649, 850
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	723
PpuMI	RGGWCCY	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	19, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	652
RsaI	GTAC	2 cut(s)	937, 1159
RsaNI	GTAC	2 cut(s)	936, 1158
SapI	GCTCTTC	1 cut(s)	529
SaqAI	TTAA	5 cut(s)	60, 584, 669, 866, 1101
SatI	GCNGC	6 cut(s)	87, 282, 315, 420, 648, 849
Sau3AI	GATC	1 cut(s)	1085
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	747
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	3 cut(s)	45, 793, 880
SfcI	CTRYAG	2 cut(s)	75, 648
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	320, 917
SmoI	CTYRAG	2 cut(s)	320, 917
SsiI	CCGC	1 cut(s)	281
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	5 cut(s)	81, 108, 152, 459, 1145
StyD4I	CCNGG	1 cut(s)	745
TaaI	ACNGT	3 cut(s)	407, 440, 622
TaiI	ACGT	3 cut(s)	28, 725, 910
TaqI	TCGA	2 cut(s)	119, 309
TatI	WGTACW	1 cut(s)	1157
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	3 cut(s)	372, 1037, 1151
Tru1I	TTAA	5 cut(s)	60, 584, 669, 866, 1101
Tru9I	TTAA	5 cut(s)	60, 584, 669, 866, 1101
TscAI	CASTG	2 cut(s)	402, 412
TseFI	GTSAC	2 cut(s)	130, 407
TseI	GCWGC	5 cut(s)	86, 314, 419, 647, 848
Tsp45I	GTSAC	2 cut(s)	130, 407
TspDTI	ATGAA	2 cut(s)	480, 719
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	402, 412
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	6 cut(s)	144, 768, 796, 912, 1134, 1168
XceI	RCATGY	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	695
XmnI	GAANNNNTTC	3 cut(s)	376, 471, 1134
XspI	CTAG	5 cut(s)	81, 108, 152, 459, 1145
Zsp2I	ATGCAT	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.