Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007069.1

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Forward (+)

102439 .. 106889

Gene Structure 4451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007069.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atggcttttcgtggaggtgcaaagcgttcccttggttcaatactgtgtagttatagatcgtcaactacagctactgctgctaatggccgaggtttttctacctgtgtctcaaacaaaagagctgtattttctcaagtcacagagacccaaacctcgattcctttgggacttgccaatccccaatgtgggtctgctctctttcttcttaggacgttgagtctgggagcatcgtcgtcttctgaccaaatgagtcttataaagcaactgaggcagagaactagtgctcctatcaaagatgtcaaggctgctctcattgattgcaattgggaaatcgaggatgcactgaaggaattgaggagaagagggaaggttttggcatcaaaaaagtcatcaagaatggcttccgagggtttgcttgcactggctcagaacgagagcagggctgccattatcgaactcaactgtgagactgactttgttgctagaaatgaaatctttcaatacttggcatcagctttggcaaagcaagctttgctggttgaaggctcttctcaacaggttcctggggtcattcccattgcctcggaacatttagaggacttgaagttaaatcttgaacatccaaaaattagtggagaaacaactgttcagaatgccattacggaagtggctgcagtaatgggggaaaatattaaacttagaaggggatttgttatgcctacagcttcacatggtgttgtttccacgtatctccatgcaagtccccaaccaggtttgggtcgcattgctggaattttatctctcgaagtagaggacaagagtgctccgttggatgccatccagcgcgttgggtcagaattggcaatgcatgtggtggctgcaaagcctttatttttaacaaaggaacatgtttcttctgatgcattagagagtgaacgggaaattctcaagtctcaggctgaaagtacgggcaagtctcagatggccatagacaaaatagtagaaggtcgtttgcgtaaatactacgaggaagttgttcttatggagcagaagtttattgtggacgattctgtaaatgtaaagacactattagataagctgtctaaggaagtgggatcacctgtgaagattgagagctttttcaggatggaagttggagaaggaattcaaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

391

Amino Acids

42.42

Weight (kDa)

8.48

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	1 cut(s)	846
AclWI	GGATC	1 cut(s)	1123
AcoI	YGGCCR	2 cut(s)	85, 984
AcsI	RAATTY	3 cut(s)	792, 942, 1164
AcuI	CTGAAG	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	734
AfaI	GTAC	1 cut(s)	967
AfiI	CCNNNNNNNGG	4 cut(s)	185, 186, 770, 776
AflIII	ACRYGT	1 cut(s)	907
AgsI	TTSAA	6 cut(s)	39, 500, 542, 604, 617, 1169
AhdI	GACNNNNNGTC	1 cut(s)	216
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	562, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	7 cut(s)	71, 122, 515, 530, 725, 1099, 1137
AluI	AGCT	7 cut(s)	71, 122, 515, 530, 725, 1099, 1137
Alw21I	GWGCWC	2 cut(s)	286, 826
Alw26I	GTCTC	5 cut(s)	112, 137, 461, 957, 981
AlwI	GGATC	1 cut(s)	1123
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	85, 984
ApeKI	GCWGC	5 cut(s)	77, 305, 443, 671, 878
ApoI	RAATTY	3 cut(s)	792, 942, 1164
Asp700I	GAANNNNTTC	4 cut(s)	400, 495, 1035, 1164
AspLEI	GCGC	1 cut(s)	846
AsuHPI	GGTGA	1 cut(s)	1110
BalI	TGGCCA	1 cut(s)	986
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	286, 826
BbvI	GCAGC	5 cut(s)	64, 292, 430, 658, 865
BccI	CCATC	3 cut(s)	845, 976, 1141
BciT130I	CCWGG	2 cut(s)	564, 771
BcoDI	GTCTC	5 cut(s)	112, 137, 461, 957, 981
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	2 cut(s)	279, 483
BfmI	CTRYAG	3 cut(s)	66, 672, 720
BisI	GCNGC	5 cut(s)	78, 306, 444, 672, 879
BlsI	GCNGC	5 cut(s)	79, 307, 445, 673, 880
Bme1390I	CCNGG	2 cut(s)	564, 771
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	564, 771
BmsI	GCATC	6 cut(s)	236, 328, 386, 518, 823, 910
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	117, 932
BsaAI	YACGTR	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	5 cut(s)	31, 88, 405, 563, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 1037, 1067
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 186, 770, 776
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	3 cut(s)	576, 783, 870
BseBI	CCWGG	2 cut(s)	564, 771
BseDI	CCNNGG	5 cut(s)	31, 88, 405, 563, 582
BseGI	GGATG	5 cut(s)	343, 619, 837, 838, 1152
BseLI	CCNNNNNNNGG	4 cut(s)	185, 186, 770, 776
BseMI	GCAATG	3 cut(s)	576, 783, 870
BseMII	CTCAG	4 cut(s)	257, 440, 968, 992
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	5 cut(s)	64, 292, 430, 658, 865
Bsh1236I	CGCG	1 cut(s)	846
BshFI	GGCC	2 cut(s)	87, 986
BsiHKAI	GWGCWC	2 cut(s)	286, 826
BslFI	GGGAC	2 cut(s)	180, 747
BslI	CCNNNNNNNGG	4 cut(s)	185, 186, 770, 776
BsmAI	GTCTC	5 cut(s)	112, 137, 461, 957, 981
BsmFI	GGGAC	2 cut(s)	180, 747
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	87, 986
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	286, 826
Bsp143I	GATC	2 cut(s)	56, 1115
BspANI	GGCC	2 cut(s)	87, 986
BspCNI	CTCAG	4 cut(s)	258, 439, 967, 991
BspFNI	CGCG	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	1123
BspQI	GCTCTTC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	3 cut(s)	576, 783, 870
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	5 cut(s)	31, 88, 405, 563, 582
BssMI	GATC	2 cut(s)	56, 1115
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	564, 771
Bst4CI	ACNGT	3 cut(s)	45, 464, 646
Bst6I	CTCTTC	2 cut(s)	355, 553
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	417, 528
BstDEI	CTNAG	7 cut(s)	206, 266, 426, 698, 954, 978, 1104
BstF5I	GGATG	5 cut(s)	343, 619, 837, 838, 1152
BstFNI	CGCG	1 cut(s)	846
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	2 cut(s)	59, 1118
BstMAI	GTCTC	5 cut(s)	112, 137, 461, 957, 981
BstMBI	GATC	2 cut(s)	56, 1115
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 268, 527, 532
BstNI	CCWGG	2 cut(s)	564, 771
BstNSI	RCATGY	2 cut(s)	872, 911
BstSCI	CCNGG	2 cut(s)	562, 769
BstSFI	CTRYAG	3 cut(s)	66, 672, 720
BstUI	CGCG	1 cut(s)	846
BstV1I	GCAGC	5 cut(s)	64, 292, 430, 658, 865
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	87, 986
BtsCI	GGATG	5 cut(s)	343, 619, 837, 838, 1152
BtsIMutI	CAGTG	2 cut(s)	341, 419
Cac8I	GCNNGC	2 cut(s)	417, 528
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	846
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	966
CspCI	CAANNNNNGTGG	2 cut(s)	852, 887
CviAII	CATG	4 cut(s)	731, 755, 869, 908
CviQI	GTAC	1 cut(s)	966
DdeI	CTNAG	7 cut(s)	206, 266, 426, 698, 954, 978, 1104
DpnI	GATC	2 cut(s)	58, 1117
DpnII	GATC	2 cut(s)	56, 1115
DraIII	CACNNNGTG	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	216
EaeI	YGGCCR	2 cut(s)	85, 984
Eam1104I	CTCTTC	2 cut(s)	355, 553
Eam1105I	GACNNNNNGTC	1 cut(s)	216
EarI	CTCTTC	2 cut(s)	355, 553
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	1164
EcoRII	CCWGG	2 cut(s)	562, 769
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	870, 925
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	734, 758, 872, 911
FaiI	YATR	9 cut(s)	54, 257, 716, 732, 756, 870, 909, 989, 1043
FalI	AAGNNNNNCTT	4 cut(s)	385, 417, 1023, 1055
FaqI	GGGAC	2 cut(s)	180, 747
FatI	CATG	4 cut(s)	730, 754, 868, 907
Fnu4HI	GCNGC	5 cut(s)	78, 306, 444, 672, 879
FokI	GGATG	5 cut(s)	350, 606, 824, 845, 1159
Fsp4HI	GCNGC	5 cut(s)	78, 306, 444, 672, 879
FspBI	CTAG	2 cut(s)	279, 483
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	5 cut(s)	78, 306, 444, 672, 879
HaeIII	GGCC	2 cut(s)	87, 986
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	4 cut(s)	734, 758, 872, 911
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	4 cut(s)	157, 217, 250, 1067
HphI	GGTGA	1 cut(s)	1110
Hpy166II	GTNNAC	3 cut(s)	63, 935, 1063
Hpy188I	TCNGA	8 cut(s)	241, 406, 429, 586, 651, 856, 919, 981
Hpy188III	TCNNGA	4 cut(s)	393, 614, 803, 1144
Hpy8I	GTNNAC	3 cut(s)	63, 935, 1063
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	6 cut(s)	340, 361, 536, 696, 998, 1154
HpyCH4III	ACNGT	3 cut(s)	45, 464, 646
HpyCH4IV	ACGT	2 cut(s)	212, 746
HpyCH4V	TGCA	9 cut(s)	20, 321, 341, 419, 674, 758, 868, 881, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 268, 527, 532
HpyF3I	CTNAG	7 cut(s)	206, 266, 426, 698, 954, 978, 1104
HpySE526I	ACGT	2 cut(s)	212, 746
Hsp92II	CATG	4 cut(s)	734, 758, 872, 911
HspAI	GCGC	1 cut(s)	844
Kzo9I	GATC	2 cut(s)	56, 1115
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	4 cut(s)	224, 289, 829, 1045
Lsp1109I	GCAGC	5 cut(s)	64, 292, 430, 658, 865
LweI	GCATC	6 cut(s)	236, 328, 386, 518, 823, 910
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	2 cut(s)	279, 483
MaeII	ACGT	2 cut(s)	212, 746
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	58, 1117
MboI	GATC	2 cut(s)	56, 1115
MboII	GAAGA	6 cut(s)	194, 228, 372, 540, 906, 1138
MfeI	CAATTG	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	286, 826
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	7 cut(s)	322, 350, 627, 792, 857, 942, 1164
MluNI	TGGCCA	1 cut(s)	986
MlyI	GAGTC	2 cut(s)	226, 259
MmeI	TCCRAC	2 cut(s)	810, 1135
Mox20I	TGGCCA	1 cut(s)	986
Mph1103I	ATGCAT	2 cut(s)	870, 925
MroXI	GAANNNNTTC	4 cut(s)	400, 495, 1035, 1164
MscI	TGGCCA	1 cut(s)	986
MseI	TTAA	3 cut(s)	608, 693, 896
Msp20I	TGGCCA	1 cut(s)	986
MspR9I	CCNGG	2 cut(s)	564, 771
MunI	CAATTG	1 cut(s)	322
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	2 cut(s)	564, 771
MvnI	CGCG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	77, 268, 527, 532
NdeII	GATC	2 cut(s)	56, 1115
NlaIII	CATG	4 cut(s)	734, 758, 872, 911
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	2 cut(s)	870, 925
NspI	RCATGY	2 cut(s)	872, 911
PciI	ACATGT	1 cut(s)	907
PciSI	GCTCTTC	1 cut(s)	553
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	4 cut(s)	400, 495, 1035, 1164
PfeI	GAWTC	2 cut(s)	157, 1067
PkrI	GCNGC	5 cut(s)	79, 307, 445, 673, 880
PleI	GAGTC	2 cut(s)	225, 258
PpsI	GAGTC	2 cut(s)	225, 258
Ppu21I	YACGTR	1 cut(s)	747
PscI	ACATGT	1 cut(s)	907
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	562, 769
PspGI	CCWGG	2 cut(s)	562, 769
PspN4I	GGNNCC	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	967
RsaNI	GTAC	1 cut(s)	966
SapI	GCTCTTC	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	608, 693, 896
SatI	GCNGC	5 cut(s)	78, 306, 444, 672, 879
Sau3AI	GATC	2 cut(s)	56, 1115
SchI	GAGTC	2 cut(s)	226, 259
ScrFI	CCNGG	2 cut(s)	564, 771
SduI	GDGCHC	2 cut(s)	286, 826
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	6 cut(s)	236, 328, 386, 518, 823, 910
SfcI	CTRYAG	3 cut(s)	66, 672, 720
SmlI	CTYRAG	2 cut(s)	132, 947
SmoI	CTYRAG	2 cut(s)	132, 947
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	7 cut(s)	322, 350, 627, 792, 857, 942, 1164
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	2 cut(s)	279, 483
StyD4I	CCNGG	2 cut(s)	562, 769
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	45, 464, 646
TaiI	ACGT	2 cut(s)	215, 749
TaqI	TCGA	4 cut(s)	155, 333, 453, 804
TasI	AATT	7 cut(s)	322, 350, 627, 792, 857, 942, 1164
TfiI	GAWTC	2 cut(s)	157, 1067
Tru1I	TTAA	3 cut(s)	608, 693, 896
Tru9I	TTAA	3 cut(s)	608, 693, 896
TscAI	CASTG	2 cut(s)	348, 426
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	5 cut(s)	77, 305, 443, 671, 878
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	2 cut(s)	677, 816
TspRI	CASTG	2 cut(s)	348, 426
XapI	RAATTY	3 cut(s)	792, 942, 1164
XceI	RCATGY	2 cut(s)	872, 911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmnI	GAANNNNTTC	4 cut(s)	400, 495, 1035, 1164
XspI	CTAG	2 cut(s)	279, 483
Zsp2I	ATGCAT	2 cut(s)	870, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.