Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Reverse (-)

50122705 .. 50128167

Gene Structure 5463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG382900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTTTTGTGGAGGTGCCAAACGTTCTCTTGGTTCACTACTGAGTATTAGGATGCTTAATGGGTCCTCAACTACAGCTAGTGCTTCCAATGGGGGTTGTTTTTCTAGCTGTGTTTCGAACACAAGAGTCACAGAGACACAAATTCCTCTAGGACTTGCCAATGGCAATACCCAATGTGGGTCTGCTGTCTTTCTTCGGAGGTTCAGCGTTGAAGCTTCTGACCATATGAGTCTCATAAAGCAACTGAGGCAGAGAACCAGCGCTCCTATCAAAGATGTCAAGGCGGCTCTCGTTGACTGCAATTGGGAAATCGAGGCTGCACTCAAGGAATTAAGGAGAAGAGGGAAGGTTTTGGCAACGAAAAAGTCGTCAAGAATGGCTTCTGAGGGTTTGCTTGCACTGGCTCACAGTGACAGCAAGGCTGCTCTTATTGAACTCAACTGTGAGACTGACTTTGTTGCTAGAAATGAAATCTTTCAATTCTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGTTGCTTGAAGGCTCTTCTCAACAGGTTTCTGGGGTCTTTCCCATTGCCTCTGAACATTTACAGGACTTGAAGTTAAATCTTGAACATCCAAAAATTAGTGGAGAAACAACTGTTCAGAATGCAATTACGGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTCAGAAGGGGATTTGTGATGTCTACTGCTTCACATGGTGTTGTTTCCACGTATCTTCATTCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTTTATCTCTTGAAGTAGAGGATAAGAATGCTGAGTTGGATGCCATTCAGCGCATGGGGTCGGAATTGGCAATGCATGTGGTGGCAGCAAAGCCTTTATTCTTAACAAAGGAACTTGTTTCTACTGATGCGTTAGAGAGTGAACGTGAAATTCTCAAGTCTCAGGCTGAAAGTACGGGCAAATCCCAGATGGCCATAGACAAAATAGTAGAAGGTCGCTTGCGTAAATACTATGAGGAAGTTGTTTTGATGGAACAGAAGTTTATTGTGGACGATTCTGTAAATGTAAAGACACTATTAGATAAGTTATCTAAGGAAGTGGGATCACCTGTGAAGATTAAGAGCTTTTTCAGGATGGAAGTTGGAGAAGGAATTCAGAGGCTACAAGAATCCAGTACATCTGAAAATTTGGCTGAGGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

399

Amino Acids

43.24

Weight (kDa)

7.06

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	142 - 381	5.4e-55	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	1 cut(s)	287
AclI	AACGTT	1 cut(s)	25
AclWI	GGATC	1 cut(s)	1105
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	5 cut(s)	144, 774, 924, 1146, 1180
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	949, 1171
AfeI	AGCGCT	1 cut(s)	265
AfiI	CCNNNNNNNGG	3 cut(s)	180, 752, 758
AgsI	TTSAA	8 cut(s)	215, 437, 482, 524, 586, 599, 741, 788
AjnI	CCWGG	1 cut(s)	751
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AloI	GAACNNNNNNTCC	2 cut(s)	250, 282
AluBI	AGCT	6 cut(s)	80, 111, 218, 497, 512, 1119
AluI	AGCT	6 cut(s)	80, 111, 218, 497, 512, 1119
Alw26I	GTCTC	4 cut(s)	131, 239, 443, 939
AlwI	GGATC	1 cut(s)	1105
Aor51HI	AGCGCT	1 cut(s)	265
AoxI	GGCC	2 cut(s)	489, 966
ApeKI	GCWGC	4 cut(s)	320, 425, 653, 860
ApoI	RAATTY	5 cut(s)	144, 774, 924, 1146, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
Asp700I	GAANNNNTTC	3 cut(s)	382, 477, 1146
AspLEI	GCGC	2 cut(s)	266, 828
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	1092
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	968
BanI	GGYRCC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	1188
BbvI	GCAGC	4 cut(s)	307, 412, 640, 872
BccI	CCATC	3 cut(s)	958, 1018, 1123
BciT130I	CCWGG	1 cut(s)	753
BcoDI	GTCTC	4 cut(s)	131, 239, 443, 939
BfaI	CTAG	4 cut(s)	81, 108, 152, 465
BfmI	CTRYAG	2 cut(s)	75, 654
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	5 cut(s)	288, 321, 426, 654, 861
BlsI	GCNGC	5 cut(s)	289, 322, 427, 655, 862
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	45, 805, 892
Bpu10I	CCTNAGC	2 cut(s)	493, 1188
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	2 cut(s)	311, 914
BsaAI	YACGTR	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 752, 758
Bse1I	ACTGG	2 cut(s)	408, 1167
Bse3DI	GCAATG	3 cut(s)	558, 765, 852
BseBI	CCWGG	1 cut(s)	753
BseGI	GGATG	4 cut(s)	60, 601, 820, 1134
BseLI	CCNNNNNNNGG	3 cut(s)	180, 752, 758
BseMI	GCAATG	3 cut(s)	558, 765, 852
BseMII	CTCAG	7 cut(s)	35, 239, 378, 694, 798, 950, 1179
BseNI	ACTGG	2 cut(s)	408, 1167
BseXI	GCAGC	4 cut(s)	307, 412, 640, 872
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	491, 968
BshNI	GGYRCC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	3 cut(s)	180, 752, 758
BsmAI	GTCTC	4 cut(s)	131, 239, 443, 939
BsmFI	GGGAC	1 cut(s)	729
BsmI	GAATGC	2 cut(s)	640, 808
BsnI	GGCC	2 cut(s)	491, 968
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	1097
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	491, 968
BspCNI	CTCAG	7 cut(s)	36, 240, 379, 693, 799, 949, 1180
BspLI	GGNNCC	2 cut(s)	19, 67
BspMAI	CTGCAG	1 cut(s)	658
BspPI	GGATC	1 cut(s)	1105
BspQI	GCTCTTC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	3 cut(s)	558, 765, 852
BsrI	ACTGG	2 cut(s)	408, 1167
BssMI	GATC	1 cut(s)	1097
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	3 cut(s)	413, 446, 628
Bst6I	CTCTTC	2 cut(s)	337, 535
BstBAI	YACGTR	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	399, 510, 995
BstDEI	CTNAG	9 cut(s)	44, 248, 387, 493, 680, 807, 936, 1086, 1188
BstF5I	GGATG	4 cut(s)	60, 601, 820, 1134
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 828
BstKTI	GATC	1 cut(s)	1100
BstMAI	GTCTC	4 cut(s)	131, 239, 443, 939
BstMBI	GATC	1 cut(s)	1097
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 509
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	75, 654
BstV1I	GCAGC	4 cut(s)	307, 412, 640, 872
BsuRI	GGCC	2 cut(s)	491, 968
BtsCI	GGATG	4 cut(s)	60, 601, 820, 1134
BtsIMutI	CAGTG	2 cut(s)	401, 418
Cac8I	GCNNGC	3 cut(s)	399, 510, 995
CfoI	GCGC	2 cut(s)	266, 828
Cfr13I	GGNCC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	2 cut(s)	948, 1170
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	3 cut(s)	713, 829, 851
CviQI	GTAC	2 cut(s)	948, 1170
DdeI	CTNAG	9 cut(s)	44, 248, 387, 493, 680, 807, 936, 1086, 1188
DpnI	GATC	1 cut(s)	1099
DpnII	GATC	1 cut(s)	1097
DraIII	CACNNNGTG	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	966
Eam1104I	CTCTTC	2 cut(s)	337, 535
EarI	CTCTTC	2 cut(s)	337, 535
Eco47I	GGWCC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	1146
EcoRII	CCWGG	1 cut(s)	751
EcoT22I	ATGCAT	1 cut(s)	852
FaeI	CATG	3 cut(s)	716, 832, 854
FaiI	YATR	8 cut(s)	228, 230, 239, 714, 830, 852, 971, 1008
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FaqI	GGGAC	1 cut(s)	729
FatI	CATG	3 cut(s)	712, 828, 850
FauNDI	CATATG	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	5 cut(s)	288, 321, 426, 654, 861
FokI	GGATG	4 cut(s)	67, 588, 827, 1141
Fsp4HI	GCNGC	5 cut(s)	288, 321, 426, 654, 861
FspBI	CTAG	4 cut(s)	81, 108, 152, 465
GlaI	GCGC	2 cut(s)	265, 827
GluI	GCNGC	5 cut(s)	288, 321, 426, 654, 861
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	491, 968
HhaI	GCGC	2 cut(s)	266, 828
Hin1II	CATG	3 cut(s)	716, 832, 854
Hin6I	GCGC	2 cut(s)	264, 826
HinP1I	GCGC	2 cut(s)	264, 826
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	216, 510
HinfI	GANTC	4 cut(s)	129, 232, 1049, 1163
HphI	GGTGA	1 cut(s)	1092
Hpy166II	GTNNAC	5 cut(s)	38, 298, 702, 917, 1045
Hpy188I	TCNGA	9 cut(s)	201, 223, 388, 568, 633, 683, 838, 1152, 1177
Hpy188III	TCNNGA	4 cut(s)	375, 596, 785, 1126
Hpy8I	GTNNAC	5 cut(s)	38, 298, 702, 917, 1045
HpyAV	CCTTC	5 cut(s)	343, 518, 678, 980, 1136
HpyCH4III	ACNGT	3 cut(s)	413, 446, 628
HpyCH4IV	ACGT	3 cut(s)	25, 728, 919
HpyCH4V	TGCA	6 cut(s)	303, 323, 401, 638, 656, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 509
HpyF3I	CTNAG	9 cut(s)	44, 248, 387, 493, 680, 807, 936, 1086, 1188
HpySE526I	ACGT	3 cut(s)	25, 728, 919
Hsp92II	CATG	3 cut(s)	716, 832, 854
HspAI	GCGC	2 cut(s)	264, 826
Kzo9I	GATC	1 cut(s)	1097
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	4 cut(s)	307, 412, 640, 872
LweI	GCATC	3 cut(s)	45, 805, 892
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	4 cut(s)	81, 108, 152, 465
MaeII	ACGT	3 cut(s)	25, 728, 919
MaeIII	GTNAC	2 cut(s)	130, 413
MalI	GATC	1 cut(s)	1099
MboI	GATC	1 cut(s)	1097
MboII	GAAGA	5 cut(s)	188, 354, 522, 725, 1120
MfeI	CAATTG	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	2 cut(s)	138, 241
MmeI	TCCRAC	3 cut(s)	792, 816, 1117
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	852
MroXI	GAANNNNTTC	3 cut(s)	382, 477, 1146
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	6 cut(s)	60, 335, 590, 675, 878, 1113
Msp20I	TGGCCA	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	753
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	2 cut(s)	640, 808
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	250, 509
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	1 cut(s)	1097
NlaIII	CATG	3 cut(s)	716, 832, 854
NlaIV	GGNNCC	2 cut(s)	19, 67
NmuCI	GTSAC	2 cut(s)	130, 413
NsiI	ATGCAT	1 cut(s)	852
NspI	RCATGY	1 cut(s)	854
NspV	TTCGAA	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	2 cut(s)	640, 808
PdmI	GAANNNNTTC	3 cut(s)	382, 477, 1146
PfeI	GAWTC	2 cut(s)	1049, 1163
PkrI	GCNGC	5 cut(s)	289, 322, 427, 655, 862
PleI	GAGTC	2 cut(s)	137, 240
PpsI	GAGTC	2 cut(s)	137, 240
Ppu21I	YACGTR	1 cut(s)	729
PpuMI	RGGWCCY	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	19, 67
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	949, 1171
RsaNI	GTAC	2 cut(s)	948, 1170
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	6 cut(s)	60, 335, 590, 675, 878, 1113
SatI	GCNGC	5 cut(s)	288, 321, 426, 654, 861
Sau3AI	GATC	1 cut(s)	1097
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	138, 241
ScrFI	CCNGG	1 cut(s)	753
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	3 cut(s)	45, 805, 892
SfcI	CTRYAG	2 cut(s)	75, 654
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	326, 929
SmoI	CTYRAG	2 cut(s)	326, 929
SsiI	CCGC	1 cut(s)	287
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	4 cut(s)	81, 108, 152, 465
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	3 cut(s)	413, 446, 628
TaiI	ACGT	3 cut(s)	28, 731, 922
TaqI	TCGA	2 cut(s)	119, 315
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	1049, 1163
Tru1I	TTAA	6 cut(s)	60, 335, 590, 675, 878, 1113
Tru9I	TTAA	6 cut(s)	60, 335, 590, 675, 878, 1113
TscAI	CASTG	2 cut(s)	408, 418
TseFI	GTSAC	2 cut(s)	130, 413
TseI	GCWGC	4 cut(s)	320, 425, 653, 860
Tsp45I	GTSAC	2 cut(s)	130, 413
TspDTI	ATGAA	2 cut(s)	486, 725
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	2 cut(s)	408, 418
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	5 cut(s)	144, 774, 924, 1146, 1180
XceI	RCATGY	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	701
XmnI	GAANNNNTTC	3 cut(s)	382, 477, 1146
XspI	CTAG	4 cut(s)	81, 108, 152, 465
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.