Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Reverse (-)

21794177 .. 21800435

Gene Structure 6259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGTTTTAGTGGAGGTGCCAAGAGATGTCTTGGTTCAATACTGAGTACAAGGATGGTTAGTAGATGCCCAACTACAGCTAGTGGTGGTAATGGGCGTGGCTTTTCTAGCTGTGCTTTGAACAAAGGAGGCACAGAGGCACAAACCTCTTTGATTCCACTAAGAGCTCCCAATACCCAATGTGGGTCTGCTCTGTTTCTTAGGAGGTTCAGCGTGGAAGCTTCTGATCATATGAGTCTCATAAAGCAACTGAGGCAGAGAACCAGCGCTCCTATGAAAGATGTCAAGGCTGCTCTCGTTGATTGCAACTGGGAAATCGAGGATGCACTCAAGGAATTGAGGAGAAGAGGGATGGTTTTGGCATCGAAAAAGTCATCAAGATTGGCGTCTGAGGGTTTGCTTGCGCTGGCGCAGAATGAGAGCAAGGCTGCTCTTATTGAGCTCAACTGTGAAACTGACTTTGTTGCTAGAAATGAAATCTTTCAATTCTTGGCCTTAGCTTTGGCAAAGCAAGCTTTGTTGGTTGAAGGCTCTTCTCAACAGGTTTCTGGGGTCTGTCCCATTGCCTCTGAACATTTAGAGGACATGAAGTTAAACCTTGAACATCCAAAAATTAGTGGAGAAACAACTGCTCAGAATGCAATTACAGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTCAGAAGAGGATTTATGATGTCTACTGCTTCACATGGTGTTGTTTCCACATATCTTCATGCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTGTATCTCTTGAAGTAGATGACAAGATTGCTCAGTTGGATGCCATTCAGCGCATTGGATCTGAATTGGCAATGCATGTGGTGGCAGCAAAGCCTTTATTCCTAACAAAGGAACTGGTTTCTACTGATGCTTTAGAGAGTGAACGCGAAATTCTCAAGTCTCAGGCTCAAAATACAGGCAAATCTCAGATGGCCATAGACAAAATAGTAGAAGGTCGCTTGCGTAAATACTATGAGGAAGTTGTTCTGATGGAGCAGAAATTTATTGTGGACGATTCTGTAAATGTAAAGACACTATTAGATAAGCTATCTAAGGAAGTGGGATCACCTGTGAAGATTAAGAGCTTTTTCAGGATGGAAGTTGGAGAAGGAATTCAAAGGCTCGAAGCATCCAGTACATCTGAAAATCTGGCTGAGGCCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

401

Amino Acids

43.3

Weight (kDa)

8.09

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	143 - 382	3.5e-54	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	704
AccII	CGCG	1 cut(s)	924
AciI	CCGC	1 cut(s)	1197
AclWI	GGATC	2 cut(s)	844, 1108
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	3 cut(s)	927, 1037, 1149
AcyI	GRCGYC	1 cut(s)	386
AdeI	CACNNNGTG	1 cut(s)	719
AfaI	GTAC	2 cut(s)	49, 1174
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	4 cut(s)	183, 755, 761, 886
AgsI	TTSAA	7 cut(s)	39, 121, 485, 527, 602, 791, 1154
AjnI	CCWGG	1 cut(s)	754
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	9 cut(s)	80, 111, 167, 221, 442, 500, 515, 1084, 1122
AluI	AGCT	9 cut(s)	80, 111, 167, 221, 442, 500, 515, 1084, 1122
Alw21I	GWGCWC	2 cut(s)	169, 444
Alw26I	GTCTC	2 cut(s)	242, 942
AlwI	GGATC	2 cut(s)	844, 1108
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	3 cut(s)	492, 969, 1194
ApeKI	GCWGC	4 cut(s)	290, 428, 656, 863
ApoI	RAATTY	3 cut(s)	927, 1037, 1149
Asp700I	GAANNNNTTC	3 cut(s)	480, 1020, 1149
AspLEI	GCGC	4 cut(s)	269, 406, 412, 831
AsuHPI	GGTGA	1 cut(s)	1095
BalI	TGGCCA	1 cut(s)	971
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	2 cut(s)	169, 444
Bbv12I	GWGCWC	2 cut(s)	169, 444
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	4 cut(s)	277, 415, 643, 875
BccI	CCATC	5 cut(s)	49, 346, 961, 1021, 1126
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	242, 942
BfaI	CTAG	3 cut(s)	81, 108, 468
BfmI	CTRYAG	2 cut(s)	75, 657
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	5 cut(s)	291, 429, 657, 864, 1197
BlsI	GCNGC	5 cut(s)	292, 430, 658, 865, 1198
Bme1390I	CCNGG	1 cut(s)	756
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	756
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	6 cut(s)	56, 313, 371, 808, 895, 1175
BmuI	ACTGGG	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	496, 1191
BpuEI	CTTGAG	2 cut(s)	314, 917
BsaHI	GRCGYC	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 755, 761, 886
Bse1I	ACTGG	3 cut(s)	314, 897, 1170
Bse3DI	GCAATG	3 cut(s)	561, 768, 855
BseBI	CCWGG	1 cut(s)	756
BseGI	GGATG	7 cut(s)	60, 328, 357, 604, 823, 1137, 1166
BseLI	CCNNNNNNNGG	4 cut(s)	183, 755, 761, 886
BseMI	GCAATG	3 cut(s)	561, 768, 855
BseMII	CTCAG	9 cut(s)	35, 242, 381, 647, 697, 824, 953, 977, 1182
BseNI	ACTGG	3 cut(s)	314, 897, 1170
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	277, 415, 643, 875
Bsh1236I	CGCG	1 cut(s)	924
BshFI	GGCC	3 cut(s)	494, 971, 1196
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	169, 444
BslFI	GGGAC	2 cut(s)	543, 732
BslI	CCNNNNNNNGG	4 cut(s)	183, 755, 761, 886
BsmAI	GTCTC	2 cut(s)	242, 942
BsmFI	GGGAC	2 cut(s)	543, 732
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	494, 971, 1196
Bsp1286I	GDGCHC	2 cut(s)	169, 444
Bsp143I	GATC	3 cut(s)	226, 836, 1100
BspACI	CCGC	1 cut(s)	1197
BspANI	GGCC	3 cut(s)	494, 971, 1196
BspCNI	CTCAG	9 cut(s)	36, 243, 382, 646, 696, 823, 952, 976, 1183
BspFNI	CGCG	1 cut(s)	924
BspLI	GGNNCC	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	2 cut(s)	844, 1108
BspQI	GCTCTTC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	3 cut(s)	561, 768, 855
BsrI	ACTGG	3 cut(s)	314, 897, 1170
BssMI	GATC	3 cut(s)	226, 836, 1100
BssNI	GRCGYC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	3 cut(s)	340, 538, 682
BstACI	GRCGYC	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	402, 408, 513, 998
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstF5I	GGATG	7 cut(s)	60, 328, 357, 604, 823, 1137, 1166
BstFNI	CGCG	1 cut(s)	924
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	4 cut(s)	269, 406, 412, 831
BstKTI	GATC	3 cut(s)	229, 839, 1103
BstMAI	GTCTC	2 cut(s)	242, 942
BstMBI	GATC	3 cut(s)	226, 836, 1100
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 253, 512, 638, 1196
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	2 cut(s)	75, 657
BstUI	CGCG	1 cut(s)	924
BstV1I	GCAGC	4 cut(s)	277, 415, 643, 875
BstX2I	RGATCY	1 cut(s)	836
BstYI	RGATCY	1 cut(s)	836
BsuRI	GGCC	3 cut(s)	494, 971, 1196
BtsCI	GGATG	7 cut(s)	60, 328, 357, 604, 823, 1137, 1166
Cac8I	GCNNGC	4 cut(s)	402, 408, 513, 998
CfoI	GCGC	4 cut(s)	269, 406, 412, 831
CseI	GACGC	1 cut(s)	375
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	48, 1173
CspCI	CAANNNNNGTGG	2 cut(s)	837, 872
CviAII	CATG	4 cut(s)	586, 716, 740, 854
CviQI	GTAC	2 cut(s)	48, 1173
DpnI	GATC	3 cut(s)	228, 838, 1102
DpnII	GATC	3 cut(s)	226, 836, 1100
DraIII	CACNNNGTG	1 cut(s)	719
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	3 cut(s)	340, 538, 682
EarI	CTCTTC	3 cut(s)	340, 538, 682
Ecl136II	GAGCTC	2 cut(s)	167, 442
Eco24I	GRGCYC	2 cut(s)	169, 444
Eco47III	AGCGCT	1 cut(s)	268
Eco53kI	GAGCTC	2 cut(s)	167, 442
EcoICRI	GAGCTC	2 cut(s)	167, 442
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoRI	GAATTC	1 cut(s)	1149
EcoRII	CCWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	855
EcoT38I	GRGCYC	2 cut(s)	169, 444
FaeI	CATG	4 cut(s)	589, 719, 743, 857
FaqI	GGGAC	2 cut(s)	543, 732
FatI	CATG	4 cut(s)	585, 715, 739, 853
FauNDI	CATATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	704
Fnu4HI	GCNGC	5 cut(s)	291, 429, 657, 864, 1197
FokI	GGATG	7 cut(s)	67, 335, 364, 591, 830, 1144, 1153
FriOI	GRGCYC	2 cut(s)	169, 444
Fsp4HI	GCNGC	5 cut(s)	291, 429, 657, 864, 1197
FspBI	CTAG	3 cut(s)	81, 108, 468
GlaI	GCGC	4 cut(s)	268, 405, 411, 830
GluI	GCNGC	5 cut(s)	291, 429, 657, 864, 1197
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	494, 971, 1196
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	4 cut(s)	269, 406, 412, 831
Hin1I	GRCGYC	1 cut(s)	386
Hin1II	CATG	4 cut(s)	589, 719, 743, 857
Hin6I	GCGC	4 cut(s)	267, 404, 410, 829
HinP1I	GCGC	4 cut(s)	267, 404, 410, 829
HindIII	AAGCTT	2 cut(s)	219, 513
HinfI	GANTC	3 cut(s)	154, 235, 1052
HphI	GGTGA	1 cut(s)	1095
Hpy166II	GTNNAC	3 cut(s)	705, 920, 1048
Hpy188I	TCNGA	9 cut(s)	226, 391, 571, 636, 686, 841, 966, 1026, 1180
Hpy188III	TCNNGA	3 cut(s)	378, 788, 1129
Hpy8I	GTNNAC	3 cut(s)	705, 920, 1048
HpyAV	CCTTC	3 cut(s)	521, 983, 1139
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	306, 326, 641, 659, 743, 853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 253, 512, 638, 1196
Hsp92I	GRCGYC	1 cut(s)	386
Hsp92II	CATG	4 cut(s)	589, 719, 743, 857
HspAI	GCGC	4 cut(s)	267, 404, 410, 829
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 836, 1100
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	3 cut(s)	172, 274, 1030
Lsp1109I	GCAGC	4 cut(s)	277, 415, 643, 875
LweI	GCATC	6 cut(s)	56, 313, 371, 808, 895, 1175
MabI	ACCWGGT	1 cut(s)	754
MaeI	CTAG	3 cut(s)	81, 108, 468
MalI	GATC	3 cut(s)	228, 838, 1102
MboI	GATC	3 cut(s)	226, 836, 1100
MboII	GAAGA	5 cut(s)	357, 525, 699, 728, 1123
MflI	RGATCY	1 cut(s)	836
MhlI	GDGCHC	2 cut(s)	169, 444
MlsI	TGGCCA	1 cut(s)	971
MluCI	AATT	9 cut(s)	335, 485, 612, 642, 777, 842, 927, 1037, 1149
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	2 cut(s)	795, 1120
Mox20I	TGGCCA	1 cut(s)	971
Mph1103I	ATGCAT	1 cut(s)	855
MroXI	GAANNNNTTC	3 cut(s)	480, 1020, 1149
MscI	TGGCCA	1 cut(s)	971
MseI	TTAA	3 cut(s)	593, 678, 1116
Msp20I	TGGCCA	1 cut(s)	971
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	1 cut(s)	924
MwoI	GCNNNNNNNGC	5 cut(s)	108, 253, 512, 638, 1196
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	3 cut(s)	226, 836, 1100
NlaIII	CATG	4 cut(s)	589, 719, 743, 857
NlaIV	GGNNCC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	855
NspI	RCATGY	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	538
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	3 cut(s)	480, 1020, 1149
PfeI	GAWTC	2 cut(s)	154, 1052
PkrI	GCNGC	5 cut(s)	292, 430, 658, 865, 1198
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp124BI	GAGCTC	2 cut(s)	169, 444
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	836
RsaI	GTAC	2 cut(s)	49, 1174
RsaNI	GTAC	2 cut(s)	48, 1173
SacI	GAGCTC	2 cut(s)	169, 444
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	593, 678, 1116
SatI	GCNGC	5 cut(s)	291, 429, 657, 864, 1197
Sau3AI	GATC	3 cut(s)	226, 836, 1100
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	2 cut(s)	169, 444
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	6 cut(s)	56, 313, 371, 808, 895, 1175
SfcI	CTRYAG	2 cut(s)	75, 657
SmlI	CTYRAG	2 cut(s)	329, 932
SmoI	CTYRAG	2 cut(s)	329, 932
Sse9I	AATT	9 cut(s)	335, 485, 612, 642, 777, 842, 927, 1037, 1149
SsiI	CCGC	1 cut(s)	1197
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	3 cut(s)	81, 108, 468
SstI	GAGCTC	2 cut(s)	169, 444
StyD4I	CCNGG	1 cut(s)	754
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	318, 365, 1161
TasI	AATT	9 cut(s)	335, 485, 612, 642, 777, 842, 927, 1037, 1149
TatI	WGTACW	2 cut(s)	47, 1172
TauI	GCSGC	1 cut(s)	1199
TfiI	GAWTC	2 cut(s)	154, 1052
Tru1I	TTAA	3 cut(s)	593, 678, 1116
Tru9I	TTAA	3 cut(s)	593, 678, 1116
TseI	GCWGC	4 cut(s)	290, 428, 656, 863
TspDTI	ATGAA	4 cut(s)	290, 489, 602, 728
XagI	CCTNNNNNAGG	1 cut(s)	884
XapI	RAATTY	3 cut(s)	927, 1037, 1149
XceI	RCATGY	1 cut(s)	857
XmiI	GTMKAC	1 cut(s)	704
XmnI	GAANNNNTTC	3 cut(s)	480, 1020, 1149
XspI	CTAG	3 cut(s)	81, 108, 468
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.