Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003807

Physical Location & Seq

Genomic Coordinates Forward (+)

25124224 .. 25129418

Gene Structure 5195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCTTTTCGTGGAGGTGCAACGCGTTCCCTTGGTTCAAAACTGTGTAGTTATAGATCGTCAACTACGGCTACTGCTGCTGCTAATGGCCGAGGTTTTTCGACCTGTGTCTCAAACAAAAGAGCTGTTTTTTCTCAAGTCACAGAGACCCAAACCTCGATTCCTTTGAGACTTGCCAATCCCCAATGTGGGTCTGCTCTCTTTCTTCTTAGGACGTTGAGCGTGGGAGCATCGTCGTCTCCTGACCAAATGAGTCTTATAAAGCAACTCAGGCAGAGAACCAGTGCTCCTATCAAAGATGTCAAGGCTGCTCTCATTGATTGCAATTGGGAAATCGAGGCTGCACTGAAGGAATTAAGGAGAAGAGGGAAGGTTTTGGCATCAAAAAAGTCATCAAGAATGGCTTCTGAGGGTTTGCTTGCACTGGCTCAGAACGAGAGCAGGGCTGCCATTATCGAACTCAACTGTGAGACTGACTTTGTTGCTAGAAATGAAATCTTTCAATACTTGGCATCAGCTTTGGCAAAGCAAGCTTTGCTGGTTGAAGGCTCTTCTCAACAGGTTCCTGGGGTCATTCCCATTGCCTCGGAACATTTAGAGGACTTGAAGTTAAATCTTGAACATCCAAAAATTAGTGGAGAAACAACTGTTCAGAATGCCATTACAGAAGTGGCTGCAGTAATGGGGGAAAATATTAAACTTAGAAGGGGATTTGTGATGCCTACAGCTTCACATGTTGTTGTTTCCACGTATCTCCATGCAAGTCCCCAACCAGGTTTGGGTCGCATTGCTGGAATTTTATCTCTCGAAGTAGAGGACAAGAGTGCTCCGTTGGATGCCATCCAGCGCGTTGGGTCAGAATTGGCAATGCATGTGGTGGCTGCAAAGCCTTTATTTTTAACAAAGGAACATGTTTCTTCTGATGCATTAGAGAGTGAACGGGAAATTCTCAAGTCTCAGGCTGAAAGTACGGGCAAGTCTCAGATGGCCATAGACAAAATAGTAGAAGGTCGTTTGCGTAAATACTACGAGGAAGTTGTTCTTATGGAGCAGAAGTTTATTGTGGACGATTCTGTAAATGTAAAGACACTATTAGATAAGCTATCTAAGGAAGTGGGATCACCTGTGAAGATTGAGAGCTTTTTCAGGATGGAAGTTGGAGAAGGAATACAAAGGCTTGAAGCATCCAATACATCTGAAAATTTGGCTGAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031974 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0071704 GO:0097159 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF_TS

Protein Analysis

407

Amino Acids

43.97

Weight (kDa)

8.18

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF_TS	PF00889	149 - 388	1.8e-55	Elongation factor TS

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11120
fragaria_vesca	FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810 FvH4_3g28810
malus_domestica	MD09G1258600.v1.1
prunus_persica	Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1 Prupe.3G150500_v2.0.a1
pyrus_communis	pycom09g17350
rosa_chinensis	RchiOBHm_Chr5g0052201 RchiOBHm_Chr7g0222291
rosa_laevigata	RLG00000002076 RLG00000034837
rosa_multiflora	Rmu_sc0006157.1_g000011 Rmu_sc0007069.1_g000021 Rmu_sc0008002.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028010 Rroxscaffold_3G00237150
rosa_rugosa	Rorug05G0274200 Rorug07G0207300 Rorug07G0207300 Rorug07G0207300
rosa_samantha	Rh5AG346700 Rh5BG357300 Rh5CG382900 Rh5DG372800 Rh7CG366300 Rh7DG345800
rosa_wichuraiana	Rw5G032750 Rw7G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AccII	CGCG	2 cut(s)	25, 849
AclWI	GGATC	1 cut(s)	1126
AcoI	YGGCCR	2 cut(s)	88, 987
AcsI	RAATTY	3 cut(s)	795, 945, 1201
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	970
AfiI	CCNNNNNNNGG	4 cut(s)	188, 189, 773, 779
AflIII	ACRYGT	3 cut(s)	23, 733, 910
AgsI	TTSAA	6 cut(s)	39, 503, 545, 607, 620, 1181
AjnI	CCWGG	2 cut(s)	565, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	6 cut(s)	125, 518, 533, 728, 1102, 1140
AluI	AGCT	6 cut(s)	125, 518, 533, 728, 1102, 1140
Alw21I	GWGCWC	2 cut(s)	289, 829
Alw26I	GTCTC	7 cut(s)	115, 140, 163, 243, 464, 960, 984
AlwI	GGATC	1 cut(s)	1126
AoxI	GGCC	2 cut(s)	88, 987
ApeKI	GCWGC	8 cut(s)	77, 80, 308, 341, 446, 674, 881, 1214
ApoI	RAATTY	3 cut(s)	795, 945, 1201
Asp700I	GAANNNNTTC	3 cut(s)	403, 498, 1038
AspLEI	GCGC	1 cut(s)	849
AsuHPI	GGTGA	1 cut(s)	1113
BalI	TGGCCA	1 cut(s)	989
Bbv12I	GWGCWC	2 cut(s)	289, 829
BbvCI	CCTCAGC	1 cut(s)	1209
BbvI	GCAGC	8 cut(s)	64, 67, 295, 328, 433, 661, 868, 1201
BccI	CCATC	3 cut(s)	848, 979, 1144
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	567, 774
BcoDI	GTCTC	7 cut(s)	115, 140, 163, 243, 464, 960, 984
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	675, 723
BisI	GCNGC	8 cut(s)	78, 81, 309, 342, 447, 675, 882, 1215
BlsI	GCNGC	8 cut(s)	79, 82, 310, 343, 448, 676, 883, 1216
Bme1390I	CCNGG	2 cut(s)	567, 774
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	567, 774
BmsI	GCATC	7 cut(s)	239, 389, 521, 708, 826, 913, 1193
BoxI	GACNNNNGTC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	1209
BpuEI	CTTGAG	2 cut(s)	120, 935
BsaAI	YACGTR	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	31, 91, 566, 585
BsaXI	ACNNNNNCTCC	4 cut(s)	271, 301, 1040, 1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 189, 773, 779
Bse1I	ACTGG	2 cut(s)	282, 429
Bse3DI	GCAATG	3 cut(s)	579, 786, 873
BseBI	CCWGG	2 cut(s)	567, 774
BseDI	CCNNGG	4 cut(s)	31, 91, 566, 585
BseGI	GGATG	5 cut(s)	622, 840, 841, 1155, 1184
BseLI	CCNNNNNNNGG	4 cut(s)	188, 189, 773, 779
BseMI	GCAATG	3 cut(s)	579, 786, 873
BseMII	CTCAG	6 cut(s)	283, 399, 443, 971, 995, 1200
BseNI	ACTGG	2 cut(s)	282, 429
BseXI	GCAGC	8 cut(s)	64, 67, 295, 328, 433, 661, 868, 1201
BsgI	GTGCAG	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	25, 849
BshFI	GGCC	2 cut(s)	90, 989
BsiHKAI	GWGCWC	2 cut(s)	289, 829
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	4 cut(s)	188, 189, 773, 779
BsmAI	GTCTC	7 cut(s)	115, 140, 163, 243, 464, 960, 984
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	750
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	90, 989
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	289, 829
Bsp143I	GATC	2 cut(s)	56, 1118
BspANI	GGCC	2 cut(s)	90, 989
BspCNI	CTCAG	6 cut(s)	282, 400, 442, 970, 994, 1201
BspFNI	CGCG	2 cut(s)	25, 849
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	1 cut(s)	1126
BspQI	GCTCTTC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	3 cut(s)	579, 786, 873
BsrI	ACTGG	2 cut(s)	282, 429
BssECI	CCNNGG	4 cut(s)	31, 91, 566, 585
BssMI	GATC	2 cut(s)	56, 1118
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	567, 774
Bst4CI	ACNGT	3 cut(s)	45, 467, 649
Bst6I	CTCTTC	2 cut(s)	358, 556
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	420, 531
BstDEI	CTNAG	9 cut(s)	209, 269, 408, 429, 701, 957, 981, 1107, 1209
BstF5I	GGATG	5 cut(s)	622, 840, 841, 1155, 1184
BstFNI	CGCG	2 cut(s)	25, 849
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	2 cut(s)	59, 1121
BstMAI	GTCTC	7 cut(s)	115, 140, 163, 243, 464, 960, 984
BstMBI	GATC	2 cut(s)	56, 1118
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 271, 530, 535, 1214
BstNI	CCWGG	2 cut(s)	567, 774
BstNSI	RCATGY	3 cut(s)	737, 875, 914
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	565, 772
BstSFI	CTRYAG	2 cut(s)	675, 723
BstUI	CGCG	2 cut(s)	25, 849
BstV1I	GCAGC	8 cut(s)	64, 67, 295, 328, 433, 661, 868, 1201
BstXI	CCANNNNNNTGG	1 cut(s)	851
BsuRI	GGCC	2 cut(s)	90, 989
BtsCI	GGATG	5 cut(s)	622, 840, 841, 1155, 1184
BtsIMutI	CAGTG	3 cut(s)	289, 344, 422
Cac8I	GCNNGC	2 cut(s)	420, 531
CfoI	GCGC	1 cut(s)	849
CsiI	ACCWGGT	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	969
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviAII	CATG	4 cut(s)	734, 758, 872, 911
CviQI	GTAC	1 cut(s)	969
DdeI	CTNAG	9 cut(s)	209, 269, 408, 429, 701, 957, 981, 1107, 1209
DpnI	GATC	2 cut(s)	58, 1120
DpnII	GATC	2 cut(s)	56, 1118
EaeI	YGGCCR	2 cut(s)	88, 987
Eam1104I	CTCTTC	2 cut(s)	358, 556
EarI	CTCTTC	2 cut(s)	358, 556
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	565, 772
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	873, 928
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	737, 761, 875, 914
FaiI	YATR	8 cut(s)	54, 260, 735, 759, 873, 912, 992, 1046
FalI	AAGNNNNNCTT	4 cut(s)	388, 420, 1026, 1058
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	4 cut(s)	733, 757, 871, 910
Fnu4HI	GCNGC	8 cut(s)	78, 81, 309, 342, 447, 675, 882, 1215
FokI	GGATG	5 cut(s)	609, 827, 848, 1162, 1171
Fsp4HI	GCNGC	8 cut(s)	78, 81, 309, 342, 447, 675, 882, 1215
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	8 cut(s)	78, 81, 309, 342, 447, 675, 882, 1215
HaeIII	GGCC	2 cut(s)	90, 989
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	4 cut(s)	737, 761, 875, 914
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	3 cut(s)	160, 253, 1070
HphI	GGTGA	1 cut(s)	1113
Hpy166II	GTNNAC	3 cut(s)	63, 938, 1066
Hpy188I	TCNGA	8 cut(s)	409, 432, 589, 654, 859, 922, 984, 1198
Hpy188III	TCNNGA	5 cut(s)	242, 396, 617, 806, 1147
Hpy8I	GTNNAC	3 cut(s)	63, 938, 1066
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	343, 364, 539, 699, 1001, 1157
HpyCH4III	ACNGT	3 cut(s)	45, 467, 649
HpyCH4IV	ACGT	2 cut(s)	215, 749
HpyCH4V	TGCA	9 cut(s)	20, 324, 344, 422, 677, 761, 871, 884, 926
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 271, 530, 535, 1214
HpyF3I	CTNAG	9 cut(s)	209, 269, 408, 429, 701, 957, 981, 1107, 1209
HpySE526I	ACGT	2 cut(s)	215, 749
Hsp92II	CATG	4 cut(s)	737, 761, 875, 914
HspAI	GCGC	1 cut(s)	847
Kzo9I	GATC	2 cut(s)	56, 1118
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	4 cut(s)	227, 292, 832, 1048
Lsp1109I	GCAGC	8 cut(s)	64, 67, 295, 328, 433, 661, 868, 1201
LweI	GCATC	7 cut(s)	239, 389, 521, 708, 826, 913, 1193
MabI	ACCWGGT	1 cut(s)	772
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	215, 749
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	58, 1120
MboI	GATC	2 cut(s)	56, 1118
MboII	GAAGA	5 cut(s)	197, 375, 543, 909, 1141
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	289, 829
MlsI	TGGCCA	1 cut(s)	989
MluCI	AATT	7 cut(s)	325, 353, 630, 795, 860, 945, 1201
MluI	ACGCGT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	813, 1138
Mox20I	TGGCCA	1 cut(s)	989
Mph1103I	ATGCAT	2 cut(s)	873, 928
MroXI	GAANNNNTTC	3 cut(s)	403, 498, 1038
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	4 cut(s)	356, 611, 696, 899
Msp20I	TGGCCA	1 cut(s)	989
MspR9I	CCNGG	2 cut(s)	567, 774
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	2 cut(s)	567, 774
MvnI	CGCG	2 cut(s)	25, 849
MwoI	GCNNNNNNNGC	5 cut(s)	77, 271, 530, 535, 1214
NdeII	GATC	2 cut(s)	56, 1118
NlaIII	CATG	4 cut(s)	737, 761, 875, 914
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	2 cut(s)	873, 928
NspI	RCATGY	3 cut(s)	737, 875, 914
PciI	ACATGT	2 cut(s)	733, 910
PciSI	GCTCTTC	1 cut(s)	556
PctI	GAATGC	1 cut(s)	661
PdmI	GAANNNNTTC	3 cut(s)	403, 498, 1038
PfeI	GAWTC	2 cut(s)	160, 1070
PkrI	GCNGC	8 cut(s)	79, 82, 310, 343, 448, 676, 883, 1216
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Ppu21I	YACGTR	1 cut(s)	750
PscI	ACATGT	2 cut(s)	733, 910
PshAI	GACNNNNGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	565, 772
PspGI	CCWGG	2 cut(s)	565, 772
PspN4I	GGNNCC	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	679
RsaI	GTAC	1 cut(s)	970
RsaNI	GTAC	1 cut(s)	969
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	4 cut(s)	356, 611, 696, 899
SatI	GCNGC	8 cut(s)	78, 81, 309, 342, 447, 675, 882, 1215
Sau3AI	GATC	2 cut(s)	56, 1118
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	567, 774
SduI	GDGCHC	2 cut(s)	289, 829
SexAI	ACCWGGT	1 cut(s)	772
SfaNI	GCATC	7 cut(s)	239, 389, 521, 708, 826, 913, 1193
SfcI	CTRYAG	2 cut(s)	675, 723
SmlI	CTYRAG	2 cut(s)	135, 950
SmoI	CTYRAG	2 cut(s)	135, 950
Sse9I	AATT	7 cut(s)	325, 353, 630, 795, 860, 945, 1201
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	565, 772
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	45, 467, 649
TaiI	ACGT	2 cut(s)	218, 752
TaqI	TCGA	5 cut(s)	101, 158, 336, 456, 807
TasI	AATT	7 cut(s)	325, 353, 630, 795, 860, 945, 1201
TfiI	GAWTC	2 cut(s)	160, 1070
Tru1I	TTAA	4 cut(s)	356, 611, 696, 899
Tru9I	TTAA	4 cut(s)	356, 611, 696, 899
TscAI	CASTG	3 cut(s)	289, 351, 429
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	8 cut(s)	77, 80, 308, 341, 446, 674, 881, 1214
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	3 cut(s)	289, 351, 429
XapI	RAATTY	3 cut(s)	795, 945, 1201
XceI	RCATGY	3 cut(s)	737, 875, 914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XmnI	GAANNNNTTC	3 cut(s)	403, 498, 1038
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	2 cut(s)	873, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.