AT4G11280

1-aminocyclopropane-1-carboxylate synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6863979 .. 6866116
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11280.1

Sequence Viewer

Length: 1488 bp
ATGGTGGCTTTTGCAACAGAGAAGAAGCAAGATCTGAATCTATTGTCTAAAATCGCCTCCGGTGACGGTCACGGCGAGAATTCCTCTTATTTCGATGGTTGGAAAGCTTATGAAGAAAACCCATTTCACCCAATTGATAGACCTGACGGAGTTATTCAAATGGGTCTCGCTGAAAATCAGCTTTGTGGAGATTTGATGCGTAAATGGGTTTTAAAACATCCAGAAGCTTCGATTTGTACATCAGAAGGTGTGAATCAATTCAGTGACATTGCCATTTTTCAAGATTATCATGGCTTGCCTGAATTCAGACAAGCTGTAGCGAAATTTATGGAGAAGACTAGAAATAACAAAGTTAAGTTTGATCCTGACCGGATTGTTATGAGCGGCGGCGCAACCGGAGCACACGAGACGGTTGCTTTCTGTTTAGCTAATCCCGGCGATGGTTTCTTAGTTCCAACCCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGAGTGAATCTTGTACCGGTTACTTGTCATAGCTCTAATGGGTTCAAGATTACGGTGGAAGCCTTGGAAGCTGCTTACGAAAACGCGAGAAAATCGAATATTCCGGTTAAGGGTTTACTTGTAACCAATCCTTCAAACCCGCTTGGTACGACGTTAGACCGGGAATGTTTGAAGTCTCTTGTTAACTTCACTAATGACAAAGGGATTCATCTTATTGCTGATGAGATTTATGCTGCTACTACTTTTGGTCAATCCGAGTTCATAAGTGTTGCGGAAGTAATCGAGGAGATCGAAGATTGTAACCGCGATTTGATACATATTGTGTATAGTCTATCTAAAGATATGGGTCTGCCTGGTTTAAGAGTTGGTATAGTATACTCTTACAATGACAGGGTGGTTCAGATCGCAAGGAAAATGTCGAGTTTCGGTCTTGTTTCGTCACAAACGCAGCATTTGATCGCTAAAATGTTATCCGATGAAGAGTTTGTAGACGAGTTTATCCGCGAGAGCAAATTGCGGTTAGCTGCAAGGCACGCTGAGATAACCACCGGTTTAGATGGTTTAGGGATTGGTTGGTTAAAGGCCAAAGCCGGTTTGTTCTTGTGGATGGATTTAAGAAATCTTTTGAAGACAGCAACGTTTGATTCGGAAACCGAACTATGGCGTGTGATTGTTCACCAAGTGAAGCTCAACGTGTCTCCAGGCGGTTCGTTCCATTGCCATGAACCGGGATGGTTTAGAGTATGTTTTGCGAATATGGACCATAAGACGATGGAGACAGCTCTAGAGAGGATTAGAGTGTTCACTAGCCAACTTGAGGAGGAGACTAAACCGATGGCTGCAACAACTATGATGGCTAAAAAGAAGAAGAAGTGTTGGCAGAGTAACCTCAGGTTAAGCTTTAGTGACACGAGGCGGTTCGATGATGGCTTCTTCTCGCCTCATTCGCCTGTGCCGCCTTCTCCGCTAGTCCGTGCACAGACTTAA

Protein Analysis

495

Amino Acids

55.52

Weight (kDa)

6.23

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 52 - 432 1.6e-106 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 2 cut(s) 876, 990
AccII CGCG 3 cut(s) 587, 807, 1005
AclI AACGTT 1 cut(s) 1139
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 3 cut(s) 79, 302, 323
AdeI CACNNNGTG 1 cut(s) 1183
AfaI GTAC 3 cut(s) 238, 516, 649
AfiI CCNNNNNNNGG 5 cut(s) 440, 611, 1161, 1228, 1318
AflIII ACRYGT 1 cut(s) 1194
AgeI ACCGGT 2 cut(s) 517, 1049
AgsI TTSAA 6 cut(s) 158, 281, 547, 636, 673, 1129
AjnI CCWGG 3 cut(s) 469, 853, 1201
Alw21I GWGCWC 2 cut(s) 403, 1480
Alw26I GTCTC 6 cut(s) 170, 401, 681, 1203, 1271, 1319
Alw44I GTGCAC 1 cut(s) 1476
AlwI GGATC 1 cut(s) 356
AoxI GGCC 1 cut(s) 1083
ApaLI GTGCAC 1 cut(s) 1476
ApeKI GCWGC 5 cut(s) 572, 734, 949, 1025, 1340
ApoI RAATTY 3 cut(s) 79, 302, 323
AsiGI ACCGGT 2 cut(s) 517, 1049
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 1261
AsuC2I CCSGG 3 cut(s) 435, 662, 1230
AsuHPI GGTGA 3 cut(s) 74, 119, 1169
AvaII GGWCC 1 cut(s) 1261
AxyI CCTNAGG 1 cut(s) 1391
BaeGI GKGCMC 1 cut(s) 1480
BauI CACGAG 2 cut(s) 404, 1411
BbsI GAAGAC 2 cut(s) 341, 1136
Bbv12I GWGCWC 2 cut(s) 403, 1480
BbvI GCAGC 5 cut(s) 559, 721, 961, 1012, 1327
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 3 cut(s) 471, 855, 1203
BcnI CCSGG 3 cut(s) 435, 662, 1230
BcoDI GTCTC 6 cut(s) 170, 401, 681, 1203, 1271, 1319
BfaI CTAG 4 cut(s) 339, 1286, 1308, 1469
BfmI CTRYAG 1 cut(s) 315
BglII AGATCT 1 cut(s) 31
BisI GCNGC 8 cut(s) 385, 388, 573, 735, 950, 1026, 1341, 1457
BlsI GCNGC 8 cut(s) 386, 389, 574, 736, 951, 1027, 1342, 1458
Bme1390I CCNGG 6 cut(s) 435, 471, 662, 855, 1203, 1230
Bme18I GGWCC 1 cut(s) 1261
BmgT120I GGNCC 1 cut(s) 1261
BmrFI CCNGG 6 cut(s) 435, 471, 662, 855, 1203, 1230
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 341, 1136
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 1185
BpuEI CTTGAG 1 cut(s) 1337
BpuMI CCSGG 3 cut(s) 435, 662, 1230
BsaBI GATNNNNATC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 470, 564
BsaWI WCCGGW 7 cut(s) 59, 369, 395, 500, 517, 604, 1049
Bsc4I CCNNNNNNNGG 5 cut(s) 440, 611, 1161, 1228, 1318
Bse118I RCCGGY 3 cut(s) 517, 1049, 1091
Bse21I CCTNAGG 1 cut(s) 1391
Bse3DI GCAATG 2 cut(s) 267, 1216
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 3 cut(s) 471, 855, 1203
BseDI CCNNGG 2 cut(s) 470, 564
BseGI GGATG 3 cut(s) 217, 1113, 1238
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 5 cut(s) 440, 611, 1161, 1228, 1318
BseMI GCAATG 2 cut(s) 267, 1216
BseMII CTCAG 2 cut(s) 1029, 1405
BseRI GAGGAG 3 cut(s) 800, 1334, 1337
BseSI GKGCMC 1 cut(s) 1480
BseXI GCAGC 5 cut(s) 559, 721, 961, 1012, 1327
Bsh1236I CGCG 3 cut(s) 587, 807, 1005
BshFI GGCC 1 cut(s) 1085
BshTI ACCGGT 2 cut(s) 517, 1049
BsiHKAI GWGCWC 2 cut(s) 403, 1480
BslI CCNNNNNNNGG 5 cut(s) 440, 611, 1161, 1228, 1318
BsmAI GTCTC 6 cut(s) 170, 401, 681, 1203, 1271, 1319
BsmBI CGTCTC 1 cut(s) 401
BsnI GGCC 1 cut(s) 1085
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 403, 1480
Bsp1407I TGTACA 1 cut(s) 236
Bsp143I GATC 5 cut(s) 31, 361, 789, 903, 957
BspANI GGCC 1 cut(s) 1085
BspCNI CTCAG 2 cut(s) 1030, 1404
BspFNI CGCG 3 cut(s) 587, 807, 1005
BspPI GGATC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 267, 1216
BsrFI RCCGGY 3 cut(s) 517, 1049, 1091
BsrGI TGTACA 1 cut(s) 236
BssAI RCCGGY 3 cut(s) 517, 1049, 1091
BssECI CCNNGG 2 cut(s) 470, 564
BssMI GATC 5 cut(s) 31, 361, 789, 903, 957
BssNAI GTATAC 1 cut(s) 877
BssSI CACGAG 2 cut(s) 404, 1411
BssT1I CCWWGG 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 877
Bst2BI CACGAG 2 cut(s) 404, 1411
Bst2UI CCWGG 3 cut(s) 471, 855, 1203
Bst4CI ACNGT 3 cut(s) 68, 412, 556
Bst6I CTCTTC 1 cut(s) 975
BstAUI TGTACA 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 296, 1035
BstDEI CTNAG 3 cut(s) 448, 1038, 1391
BstF5I GGATG 3 cut(s) 217, 1113, 1238
BstFNI CGCG 3 cut(s) 587, 807, 1005
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 5 cut(s) 34, 364, 792, 906, 960
BstMAI GTCTC 6 cut(s) 170, 401, 681, 1203, 1271, 1319
BstMBI GATC 5 cut(s) 31, 361, 789, 903, 957
BstMWI GCNNNNNNNGC 6 cut(s) 398, 569, 1034, 1447, 1456, 1465
BstNI CCWGG 3 cut(s) 471, 855, 1203
BstSCI CCNGG 6 cut(s) 433, 469, 660, 853, 1201, 1228
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 1480
BstUI CGCG 3 cut(s) 587, 807, 1005
BstV1I GCAGC 5 cut(s) 559, 721, 961, 1012, 1327
BstV2I GAAGAC 2 cut(s) 341, 1136
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BstZ17I GTATAC 1 cut(s) 877
Bsu36I CCTNAGG 1 cut(s) 1391
BsuRI GGCC 1 cut(s) 1085
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 217, 1113, 1238
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 296, 1035
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 3 cut(s) 517, 1049, 1091
Cfr13I GGNCC 1 cut(s) 1261
Csp6I GTAC 3 cut(s) 237, 515, 648
CspAI ACCGGT 2 cut(s) 517, 1049
CviAII CATG 2 cut(s) 290, 1223
CviQI GTAC 3 cut(s) 237, 515, 648
DdeI CTNAG 3 cut(s) 448, 1038, 1391
DpnI GATC 5 cut(s) 33, 363, 791, 905, 959
DpnII GATC 5 cut(s) 31, 361, 789, 903, 957
DraI TTTAAA 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 1183
Eam1104I CTCTTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 975
Eco130I CCWWGG 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 1261
Eco81I CCTNAGG 1 cut(s) 1391
EcoRI GAATTC 2 cut(s) 79, 302
EcoRII CCWGG 3 cut(s) 469, 853, 1201
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 2 cut(s) 293, 1226
FatI CATG 2 cut(s) 289, 1222
FauI CCCGC 1 cut(s) 648
FblI GTMKAC 2 cut(s) 876, 990
Fnu4HI GCNGC 8 cut(s) 385, 388, 573, 735, 950, 1026, 1341, 1457
FokI GGATG 3 cut(s) 204, 1120, 1245
Fsp4HI GCNGC 8 cut(s) 385, 388, 573, 735, 950, 1026, 1341, 1457
FspBI CTAG 4 cut(s) 339, 1286, 1308, 1469
GlaI GCGC 1 cut(s) 391
GluI GCNGC 8 cut(s) 385, 388, 573, 735, 950, 1026, 1341, 1457
GsuI CTGGAG 1 cut(s) 1185
HaeIII GGCC 1 cut(s) 1085
HhaI GCGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 293, 1226
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 3 cut(s) 105, 225, 1399
HinfI GANTC 5 cut(s) 37, 253, 508, 706, 1145
HpaI GTTAAC 1 cut(s) 685
HphI GGTGA 3 cut(s) 74, 119, 1169
Hpy166II GTNNAC 7 cut(s) 617, 685, 877, 991, 1177, 1305, 1478
Hpy188I TCNGA 7 cut(s) 36, 244, 308, 757, 903, 976, 1150
Hpy188III TCNNGA 5 cut(s) 221, 281, 365, 547, 1286
Hpy8I GTNNAC 7 cut(s) 617, 685, 877, 991, 1177, 1305, 1478
Hpy99I CGWCG 1 cut(s) 655
HpyAV CCTTC 3 cut(s) 239, 642, 1470
HpyCH4III ACNGT 3 cut(s) 68, 412, 556
HpyCH4IV ACGT 3 cut(s) 653, 1139, 1194
HpyCH4V TGCA 4 cut(s) 14, 1028, 1343, 1478
HpyF10VI GCNNNNNNNGC 6 cut(s) 398, 569, 1034, 1447, 1456, 1465
HpyF3I CTNAG 3 cut(s) 448, 1038, 1391
HpySE526I ACGT 3 cut(s) 653, 1139, 1194
Hsp92II CATG 2 cut(s) 293, 1226
HspAI GCGC 1 cut(s) 390
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 5 cut(s) 31, 361, 789, 903, 957
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 5 cut(s) 559, 721, 961, 1012, 1327
LweI GCATC 1 cut(s) 186
MaeI CTAG 4 cut(s) 339, 1286, 1308, 1469
MaeII ACGT 3 cut(s) 653, 1139, 1194
MaeIII GTNAC 9 cut(s) 62, 68, 263, 520, 622, 800, 939, 1385, 1406
MalI GATC 5 cut(s) 33, 363, 791, 905, 959
MbiI CCGCTC 1 cut(s) 384
MboI GATC 5 cut(s) 31, 361, 789, 903, 957
MboII GAAGA 9 cut(s) 34, 125, 346, 806, 992, 1141, 1378, 1381, 1426
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 403, 1480
MluCI AATT 6 cut(s) 79, 132, 257, 302, 323, 1013
MmeI TCCRAC 2 cut(s) 80, 479
MnlI CCTC 9 cut(s) 67, 94, 778, 1284, 1312, 1315, 1400, 1407, 1452
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 9 cut(s) 212, 354, 609, 684, 860, 1079, 1115, 1397, 1486
MslI CAYNNNNRTG 1 cut(s) 1221
MspR9I CCNGG 6 cut(s) 435, 471, 662, 855, 1203, 1230
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 3 cut(s) 471, 855, 1203
MvnI CGCG 3 cut(s) 587, 807, 1005
MwoI GCNNNNNNNGC 6 cut(s) 398, 569, 1034, 1447, 1456, 1465
NciI CCSGG 3 cut(s) 435, 662, 1230
NdeII GATC 5 cut(s) 31, 361, 789, 903, 957
NlaIII CATG 2 cut(s) 293, 1226
NmuCI GTSAC 5 cut(s) 62, 68, 263, 939, 1406
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 789
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 5 cut(s) 37, 253, 508, 706, 1145
PinAI ACCGGT 2 cut(s) 517, 1049
PkrI GCNGC 8 cut(s) 386, 389, 574, 736, 951, 1027, 1342, 1458
Psp1406I AACGTT 1 cut(s) 1139
Psp6I CCWGG 3 cut(s) 469, 853, 1201
PspGI CCWGG 3 cut(s) 469, 853, 1201
PspPI GGNCC 1 cut(s) 1261
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 3 cut(s) 238, 516, 649
RsaNI GTAC 3 cut(s) 237, 515, 648
RseI CAYNNNNRTG 1 cut(s) 1221
SaqAI TTAA 9 cut(s) 212, 354, 609, 684, 860, 1079, 1115, 1397, 1486
SatI GCNGC 8 cut(s) 385, 388, 573, 735, 950, 1026, 1341, 1457
Sau3AI GATC 5 cut(s) 31, 361, 789, 903, 957
Sau96I GGNCC 1 cut(s) 1261
ScrFI CCNGG 6 cut(s) 435, 471, 662, 855, 1203, 1230
SduI GDGCHC 2 cut(s) 403, 1480
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 1261
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 1 cut(s) 1316
SmoI CTYRAG 1 cut(s) 1316
Sse9I AATT 6 cut(s) 79, 132, 257, 302, 323, 1013
SspI AATATT 1 cut(s) 601
SspMI CTAG 4 cut(s) 339, 1286, 1308, 1469
StyD4I CCNGG 6 cut(s) 433, 469, 660, 853, 1201, 1228
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 3 cut(s) 68, 412, 556
TaiI ACGT 3 cut(s) 656, 1142, 1197
TaqI TCGA 7 cut(s) 93, 230, 596, 783, 792, 920, 1422
TaqII GACCGA 1 cut(s) 917
TasI AATT 6 cut(s) 79, 132, 257, 302, 323, 1013
TatI WGTACW 1 cut(s) 236
TauI GCSGC 3 cut(s) 387, 390, 1459
TfiI GAWTC 5 cut(s) 37, 253, 508, 706, 1145
Tru1I TTAA 9 cut(s) 212, 354, 609, 684, 860, 1079, 1115, 1397, 1486
Tru9I TTAA 9 cut(s) 212, 354, 609, 684, 860, 1079, 1115, 1397, 1486
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 5 cut(s) 62, 68, 263, 939, 1406
TseI GCWGC 5 cut(s) 572, 734, 949, 1025, 1340
Tsp45I GTSAC 5 cut(s) 62, 68, 263, 939, 1406
TspDTI ATGAA 5 cut(s) 126, 698, 751, 993, 1239
TspGWI ACGGA 2 cut(s) 162, 1463
TspRI CASTG 1 cut(s) 268
VneI GTGCAC 1 cut(s) 1476
VpaK11BI GGWCC 1 cut(s) 1261
XapI RAATTY 3 cut(s) 79, 302, 323
XbaI TCTAGA 1 cut(s) 1285
XmiI GTMKAC 2 cut(s) 876, 990
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 4 cut(s) 339, 1286, 1308, 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.