MD06G1090600.v1.1

1-aminocyclopropane-1-carboxylate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
21948037 .. 21951007
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1090600.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGGGGTTTACTTTGAGCAACCAACAGCAACTGTTGTCTAAGATAGCAACAGGCAATGGCCACGGCGAAAACTCTCCATACTTTGATGGATGGAAGGCTTATGATAGTGATCCTTTTCATCCCACCAAGAACCCTAATGGGGTTATCCAGATGGGTCTTGCAGAAAATCAAATGTGTTTTGATTTGATCCAAGAGTGGATTTTGAACAATCCAGAAGCCTCCATTTGCACAGCAGCAGGGGTGAATGAATTCAAGGACATAGCCATATTTCAGGATTATCATGGATTGCCAGAGTTTAGAAATGCTGTTGCAAATTTTATGGGAAAAGTGAGAGGAAATCGTGTCACATTCGATGCAGACCGGATTGTTATGAGCGGAGGAGCTACTGGAGCTCATGAGATGATAGCCTTTTGCTTGGCTGATCCTGGAGATGCATTTCTTGTGCCCGTTCCTTATTATCCAGGTTTTGATCGAGATTTGGGATGGCGAACGGGAGTACAACTGATTCCGGTTGCCTGTGACAGCTCCAACAATTTCAAAGTCACCAGAGCAGCATTGGAAGCTGCCTATGAGAAAGCTCAGAAGGCAAACATCAGAGTAAAGGGCTTGCTCATTACTAACCCCTCAAACCCCTTAGGTACTGTCCTTGACCGAGACACCCTCATAAGTCTAGTGACATTCATCAACGAAAAGAAAATCCATCTAGTCTGCGATGAAATCTATGCTGCCACCGTGTTCAGTCAGCCAAGTTTCATAAGCATAGCCGAGATCATAGAGGAAAACATCGGATGCAACCGCAATCTTATTCACATTGTGTACAGTCTTTCAAAAGACATGGGGTTCCCTGGCTTCAGAGTTGGCATCGTATATTCCTACAATGACGCTGTCGTTAATTGCGCACGAAAGATGTCGAGTTTTGGATTGGTTTCGACACAAACTCAGCATCTGATTGCATCAATGCTGTCAGACAATGAGTTTGTGAAGAGATTTATAGCACAAAGTGCTAAAAGGCTGAAAACAAGGCACATGCGCTTCACAATGGGGCTTGCTCAAGTCAGCACAAACTGCTTGAAGAGCAATGGCGGTCTTTTTGTATGGATGGACTTGCGTAGGCTGCTCAAGGAGCAGACGTTTGAAGCTGAGATGGTGTTGTGGCGTACAATAATCCATGAAGTTAAGCTCAATGTGTCACCAGGTTCGTCATTTCACTGCCCCGAGCCGGGCTGGTTCAGAGTATGCTTTGCCAACATGGATGACAAGACCATGGAAGTTGCTTTGACACGAATCCGAACCTTTGTGCTACAAAACAAGGAAGCAATTGTGCCGAGGAAGAGCAACAGGTTATGGCACAGCAACCTTAGGCTCAGCTTTCAGTCTCGGCGAATGGATGACACCATGATGTCTCCGTGTATGATGTCTCCTCATACGCCGATACCCCAGTCACCTCTTGTTCGAGCCACTTAG

Protein Analysis

488

Amino Acids

54.65

Weight (kDa)

8.41

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 49 - 429 5e-107 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 898
AccBSI CCGCTC 1 cut(s) 375
AciI CCGC 3 cut(s) 375, 796, 1083
AclWI GGATC 3 cut(s) 104, 181, 416
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 248, 313
AcuI CTGAAG 1 cut(s) 835
AdeI CACNNNGTG 2 cut(s) 814, 1001
AfaI GTAC 4 cut(s) 498, 640, 818, 1159
AfiI CCNNNNNNNGG 3 cut(s) 139, 1219, 1220
AgsI TTSAA 6 cut(s) 205, 253, 538, 828, 1072, 1136
AjnI CCWGG 4 cut(s) 424, 460, 844, 1192
AluBI AGCT 8 cut(s) 383, 392, 525, 563, 578, 1139, 1180, 1368
AluI AGCT 8 cut(s) 383, 392, 525, 563, 578, 1139, 1180, 1368
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 4 cut(s) 648, 1380, 1407, 1422
AlwI GGATC 3 cut(s) 104, 181, 416
AlwNI CAGNNNCTG 2 cut(s) 31, 946
Ama87I CYCGRG 1 cut(s) 1214
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 5 cut(s) 233, 551, 563, 725, 1114
ApoI RAATTY 2 cut(s) 248, 313
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 899, 1032
AsuC2I CCSGG 1 cut(s) 1221
AsuHPI GGTGA 4 cut(s) 253, 535, 1182, 1434
AvaI CYCGRG 1 cut(s) 1214
AxyI CCTNAGG 2 cut(s) 634, 1358
BaeGI GKGCMC 1 cut(s) 447
BaeI ACNNNNGTAYC 2 cut(s) 1424, 1457
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 5 cut(s) 245, 550, 563, 712, 1101
BccI CCATC 7 cut(s) 80, 84, 145, 477, 708, 1093, 1138
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 426, 462, 846, 1194
BcnI CCSGG 1 cut(s) 1221
BcoDI GTCTC 4 cut(s) 648, 1380, 1407, 1422
BfaI CTAG 2 cut(s) 671, 704
BisI GCNGC 5 cut(s) 234, 552, 564, 726, 1115
BlpI GCTNAGC 1 cut(s) 1364
BlsI GCNGC 5 cut(s) 235, 553, 565, 727, 1116
Bme1390I CCNGG 5 cut(s) 426, 462, 846, 1194, 1221
BmeT110I CYCGRG 1 cut(s) 1214
BmiI GGNNCC 1 cut(s) 842
BmrFI CCNGG 5 cut(s) 426, 462, 846, 1194, 1221
BmrI ACTGGG 1 cut(s) 1432
BmsI GCATC 6 cut(s) 343, 421, 779, 870, 952, 962
BmuI ACTGGG 1 cut(s) 1432
BplI GAGNNNNNCTC 2 cut(s) 645, 677
BpmI CTGGAG 2 cut(s) 408, 447
Bpu1102I GCTNAGC 1 cut(s) 1364
BpuEI CTTGAG 2 cut(s) 1035, 1103
BpuMI CCSGG 1 cut(s) 1221
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 61, 844, 1263, 1325
BsaWI WCCGGW 2 cut(s) 360, 508
BsaXI ACNNNNNCTCC 2 cut(s) 1115, 1145
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 1219, 1220
Bse1I ACTGG 2 cut(s) 391, 1438
Bse21I CCTNAGG 2 cut(s) 634, 1358
Bse3DI GCAATG 2 cut(s) 61, 1084
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 4 cut(s) 426, 462, 846, 1194
BseDI CCNNGG 4 cut(s) 61, 844, 1263, 1325
BseGI GGATG 7 cut(s) 95, 118, 488, 794, 1104, 1258, 1393
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 3 cut(s) 139, 1219, 1220
BseMI GCAATG 2 cut(s) 61, 1084
BseMII CTCAG 4 cut(s) 593, 953, 1131, 1378
BseNI ACTGG 2 cut(s) 391, 1438
BseRI GAGGAG 2 cut(s) 393, 1410
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 5 cut(s) 245, 550, 563, 712, 1101
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 1214
BsiSI CCGG 3 cut(s) 361, 509, 1220
BslI CCNNNNNNNGG 3 cut(s) 139, 1219, 1220
BsmAI GTCTC 4 cut(s) 648, 1380, 1407, 1422
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 1214
Bsp1286I GDGCHC 2 cut(s) 394, 447
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 5 cut(s) 109, 186, 421, 469, 768
Bsp1720I GCTNAGC 1 cut(s) 1364
Bsp19I CCATGG 1 cut(s) 1263
BspACI CCGC 3 cut(s) 375, 796, 1083
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 4 cut(s) 592, 952, 1132, 1377
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 842
BspPI GGATC 3 cut(s) 104, 181, 416
BspQI GCTCTTC 2 cut(s) 1067, 1325
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 61, 1084
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 391, 1438
BssECI CCNNGG 4 cut(s) 61, 844, 1263, 1325
BssMI GATC 5 cut(s) 109, 186, 421, 469, 768
BssT1I CCWWGG 1 cut(s) 1263
Bst2UI CCWGG 4 cut(s) 426, 462, 846, 1194
Bst4CI ACNGT 4 cut(s) 33, 643, 733, 821
Bst6I CTCTTC 3 cut(s) 977, 1067, 1325
BstAPI GCANNNNNTGC 2 cut(s) 1001, 1065
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 2 cut(s) 608, 1047
BstDEI CTNAG 8 cut(s) 39, 579, 634, 939, 1140, 1358, 1364, 1461
BstDSI CCRYGG 2 cut(s) 61, 1263
BstF5I GGATG 7 cut(s) 95, 118, 488, 794, 1104, 1258, 1393
BstHHI GCGC 2 cut(s) 899, 1032
BstKTI GATC 5 cut(s) 112, 189, 424, 472, 771
BstMAI GTCTC 4 cut(s) 648, 1380, 1407, 1422
BstMBI GATC 5 cut(s) 109, 186, 421, 469, 768
BstMWI GCNNNNNNNGC 8 cut(s) 389, 560, 584, 1001, 1065, 1074, 1114, 1123
BstNI CCWGG 4 cut(s) 426, 462, 846, 1194
BstNSI RCATGY 1 cut(s) 1030
BstSCI CCNGG 5 cut(s) 424, 460, 844, 1192, 1219
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 5 cut(s) 245, 550, 563, 712, 1101
Bsu36I CCTNAGG 2 cut(s) 634, 1358
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 2 cut(s) 61, 1263
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 7 cut(s) 95, 118, 488, 794, 1104, 1258, 1393
BtsI GCAGTG 1 cut(s) 1207
BtsIMutI CAGTG 1 cut(s) 1207
Cac8I GCNNGC 2 cut(s) 608, 1047
CaiI CAGNNNCTG 2 cut(s) 31, 946
CciI TCATGA 1 cut(s) 394
CfoI GCGC 2 cut(s) 899, 1032
CseI GACGC 1 cut(s) 890
CsiI ACCWGGT 1 cut(s) 1192
Csp6I GTAC 4 cut(s) 497, 639, 817, 1158
CviAII CATG 8 cut(s) 281, 395, 835, 1027, 1169, 1249, 1264, 1396
CviQI GTAC 4 cut(s) 497, 639, 817, 1158
DdeI CTNAG 8 cut(s) 39, 579, 634, 939, 1140, 1358, 1364, 1461
DpnI GATC 5 cut(s) 111, 188, 423, 471, 770
DpnII GATC 5 cut(s) 109, 186, 421, 469, 768
DraIII CACNNNGTG 2 cut(s) 814, 1001
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 3 cut(s) 977, 1067, 1325
EarI CTCTTC 3 cut(s) 977, 1067, 1325
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 1263
Eco24I GRGCYC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 835
Eco81I CCTNAGG 2 cut(s) 634, 1358
Eco88I CYCGRG 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 4 cut(s) 424, 460, 844, 1192
EcoT14I CCWWGG 1 cut(s) 1263
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 1263
FaeI CATG 8 cut(s) 284, 398, 838, 1030, 1172, 1252, 1267, 1399
FatI CATG 8 cut(s) 280, 394, 834, 1026, 1168, 1248, 1263, 1395
Fnu4HI GCNGC 5 cut(s) 234, 552, 564, 726, 1115
FokI GGATG 7 cut(s) 102, 105, 495, 801, 1111, 1265, 1400
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 234, 552, 564, 726, 1115
FspBI CTAG 2 cut(s) 671, 704
FspI TGCGCA 1 cut(s) 898
GlaI GCGC 2 cut(s) 898, 1031
GluI GCNGC 5 cut(s) 234, 552, 564, 726, 1115
GsuI CTGGAG 2 cut(s) 408, 447
HaeIII GGCC 1 cut(s) 60
HapII CCGG 3 cut(s) 361, 509, 1220
HgaI GACGC 1 cut(s) 890
HhaI GCGC 2 cut(s) 899, 1032
Hin1II CATG 8 cut(s) 284, 398, 838, 1030, 1172, 1252, 1267, 1399
Hin6I GCGC 2 cut(s) 897, 1030
HinP1I GCGC 2 cut(s) 897, 1030
HinfI GANTC 2 cut(s) 505, 1284
HpaII CCGG 3 cut(s) 361, 509, 1220
HphI GGTGA 4 cut(s) 253, 535, 1182, 1434
Hpy166II GTNNAC 2 cut(s) 9, 817
Hpy188I TCNGA 8 cut(s) 582, 596, 788, 854, 948, 967, 1232, 1289
Hpy188III TCNNGA 5 cut(s) 148, 212, 272, 395, 473
Hpy8I GTNNAC 2 cut(s) 9, 817
HpyAV CCTTC 2 cut(s) 88, 577
HpyCH4III ACNGT 4 cut(s) 33, 643, 733, 821
HpyCH4IV ACGT 1 cut(s) 1130
HpyCH4V TGCA 7 cut(s) 161, 228, 311, 356, 434, 792, 953
HpyF10VI GCNNNNNNNGC 8 cut(s) 389, 560, 584, 1001, 1065, 1074, 1114, 1123
HpyF3I CTNAG 8 cut(s) 39, 579, 634, 939, 1140, 1358, 1364, 1461
HpySE526I ACGT 1 cut(s) 1130
Hsp92II CATG 8 cut(s) 284, 398, 838, 1030, 1172, 1252, 1267, 1399
HspAI GCGC 2 cut(s) 897, 1030
Kzo9I GATC 5 cut(s) 109, 186, 421, 469, 768
LguI GCTCTTC 2 cut(s) 1067, 1325
LmnI GCTCC 4 cut(s) 380, 389, 530, 1123
Lsp1109I GCAGC 5 cut(s) 245, 550, 563, 712, 1101
LweI GCATC 6 cut(s) 343, 421, 779, 870, 952, 962
MabI ACCWGGT 1 cut(s) 1192
MaeI CTAG 2 cut(s) 671, 704
MaeII ACGT 1 cut(s) 1130
MaeIII GTNAC 6 cut(s) 343, 518, 541, 673, 1188, 1440
MalI GATC 5 cut(s) 111, 188, 423, 471, 770
MbiI CCGCTC 1 cut(s) 375
MboI GATC 5 cut(s) 109, 186, 421, 469, 768
MboII GAAGA 3 cut(s) 994, 1084, 1342
MfeI CAATTG 1 cut(s) 1317
MhlI GDGCHC 2 cut(s) 394, 447
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 5 cut(s) 248, 313, 532, 892, 1317
MluNI TGGCCA 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 9 cut(s) 229, 326, 371, 634, 671, 769, 1320, 1431, 1455
Mox20I TGGCCA 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 248
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 891, 1176
MslI CAYNNNNRTG 1 cut(s) 1397
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 3 cut(s) 361, 509, 1220
MspR9I CCNGG 5 cut(s) 426, 462, 846, 1194, 1221
MunI CAATTG 1 cut(s) 1317
MvaI CCWGG 4 cut(s) 426, 462, 846, 1194
MwoI GCNNNNNNNGC 8 cut(s) 389, 560, 584, 1001, 1065, 1074, 1114, 1123
NciI CCSGG 1 cut(s) 1221
NcoI CCATGG 1 cut(s) 1263
NdeII GATC 5 cut(s) 109, 186, 421, 469, 768
NlaIII CATG 8 cut(s) 284, 398, 838, 1030, 1172, 1252, 1267, 1399
NlaIV GGNNCC 1 cut(s) 842
NmeAIII GCCGAG 3 cut(s) 790, 1350, 1357
NmuCI GTSAC 6 cut(s) 343, 518, 541, 673, 1188, 1440
NsbI TGCGCA 1 cut(s) 898
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 1030
PagI TCATGA 1 cut(s) 394
PciSI GCTCTTC 2 cut(s) 1067, 1325
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 505, 1284
PflFI GACNNNGTC 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 5 cut(s) 235, 553, 565, 727, 1116
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 4 cut(s) 424, 460, 844, 1192
PspGI CCWGG 4 cut(s) 424, 460, 844, 1192
PspN4I GGNNCC 1 cut(s) 842
PstNI CAGNNNCTG 2 cut(s) 31, 946
PsyI GACNNNGTC 1 cut(s) 884
RsaI GTAC 4 cut(s) 498, 640, 818, 1159
RsaNI GTAC 4 cut(s) 497, 639, 817, 1158
RseI CAYNNNNRTG 1 cut(s) 1397
SacI GAGCTC 1 cut(s) 394
SapI GCTCTTC 2 cut(s) 1067, 1325
SaqAI TTAA 2 cut(s) 891, 1176
SatI GCNGC 5 cut(s) 234, 552, 564, 726, 1115
Sau3AI GATC 5 cut(s) 109, 186, 421, 469, 768
ScrFI CCNGG 5 cut(s) 426, 462, 846, 1194, 1221
SduI GDGCHC 2 cut(s) 394, 447
SexAI ACCWGGT 1 cut(s) 1192
SfaNI GCATC 6 cut(s) 343, 421, 779, 870, 952, 962
SmiMI CAYNNNNRTG 1 cut(s) 1397
SmlI CTYRAG 2 cut(s) 1050, 1118
SmoI CTYRAG 2 cut(s) 1050, 1118
Sse9I AATT 5 cut(s) 248, 313, 532, 892, 1317
SsiI CCGC 3 cut(s) 375, 796, 1083
SspMI CTAG 2 cut(s) 671, 704
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 5 cut(s) 424, 460, 844, 1192, 1219
StyI CCWWGG 1 cut(s) 1263
TaaI ACNGT 4 cut(s) 33, 643, 733, 821
TaiI ACGT 1 cut(s) 1133
TaqI TCGA 5 cut(s) 351, 472, 911, 929, 1453
TaqII GACCGA 1 cut(s) 666
TasI AATT 5 cut(s) 248, 313, 532, 892, 1317
TatI WGTACW 2 cut(s) 496, 816
TfiI GAWTC 2 cut(s) 505, 1284
Tru1I TTAA 2 cut(s) 891, 1176
Tru9I TTAA 2 cut(s) 891, 1176
TscAI CASTG 1 cut(s) 1214
TseFI GTSAC 6 cut(s) 343, 518, 541, 673, 1188, 1440
TseI GCWGC 5 cut(s) 233, 551, 563, 725, 1114
Tsp45I GTSAC 6 cut(s) 343, 518, 541, 673, 1188, 1440
TspDTI ATGAA 6 cut(s) 107, 261, 670, 729, 742, 1185
TspGWI ACGGA 1 cut(s) 1395
TspRI CASTG 1 cut(s) 1214
Tth111I GACNNNGTC 1 cut(s) 884
XapI RAATTY 2 cut(s) 248, 313
XceI RCATGY 1 cut(s) 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 2 cut(s) 671, 704
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.