Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012840

Physical Location & Seq

Genomic Coordinates Forward (+)

2510953 .. 2517704

Gene Structure 6752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGTCTGCTACTGTTTCTCAAGTTCAGGCAAGCATTTCAATGCCGGAGGAGTCATCTGATTATGGCCGTGCCAGCTTCTGGACTCGAGCAAATGCTTTGCTCAGAAAGAACTTAACTTTCCAGAAACGGAATATGAAACAGAATGTTCGGCTTGTTTCAGTCCCAATTTTGCTATGTATAATGCTCCTTCTCATCCAAATTTTGGTCAACCATGAACTGGATAAGCCTGAGAATAGGTGTGGCTGTGTTTGTGTTGATACTAACGGAGACGGCGAATGTGAGAAAGTTTGTGGATTGGAATACTCAACTGTGGATCAAGGGTTCACTTGTCCCATTCCTCATCCCCCGGAATGGCCGCCATTGCTTCAAGTGCCGAATCCTGAATTTCGTGCGGTGATATCTGACGTTGTTCCGTATAAAGACTTGCCGAGTGAGTCATGCAAGAGGACAGGATCTTGTCCTGTAACCGTATTGTTCACCGGGAGTAATCATTCGATGGGGGAAGTTTTGGCTCGGAATATGTTCACAAGTTCTTTTACATTGAATTCCTCTGATAATCTGGATGATGGTTTAGCCAGTAATGTCTTAGGCTCAGAATCAATGCCTGAATCTTCCAATTTCCTTGATCCTGCCTTCTATTCGGGTCTTCCGATGTATAATGTGCAAAGCAGATGCTCAAACAACTCTGTCTTTTCTGTTCCCATTAATATATCATCCATTGAAATACAACAAGAGGTGAGATGTGTTCAAGGTCTGCATGTGTGGCGCAATAGTTCTTCTGAGATAAACAATGAGCTATATAAGGGTTACAGATATGGGAATTCAGAGAGGAAGATTAATGAACTACTTTCAGCTTATGACTTCTCTAACTCAAATATGAACAACTTTAATGTAAGCATATGGTACAATTCAACCTTTAAGAATGACACAGGCAATAGTCCAATTGCTTTGCTGCGGCTTCCACGCTCAGTAAATTTGGTATCCAATGCGTACCTTCAGTTTTTGCTAGGATCTGGTACAAACATGTTGCTTGAGTTTGTCAAAGAAATGCCCAAGCCCGAAACCAGTCTCAGGCTGGACTTCTCTTCTCTTATTGGTACAATCTTCTACACGTGGGTCATTTTACAGCTATTCCCGGTGGTGTTGACGTCACTGGTTTATGAGAAAGAACAAAAATTGAGAATCATGATGAAAATGCATGGACTTGGTGACGGACCTTATTGGATGATTTCATATATATATTTTCTTACAGTATCTTCAATCTACATGCTATGTTTTGTTATATTTGGCTCACTTATAGGATTAAAATTCTTTGCACTGAATGACTACAGCATCCAATTTGTCTTTTACTTCATCTATATCAACTTGCAAATATCAACGGCTTTTCTAGTATCTACTATGTTTTCAAATGTGAAGACTTCTGCAGTCATAGGTTATATATGCGTCTTTGGAACTGGGCTTTTGGGAGCCTCTCTTTTTGAGTTCTTTCTCCAAACTCCGTCATTCCCTAGAGGTTGGATCACTGTTCTAGAGCTATATCCTGGCTTCTCTCTGTATCGTGGGTTATATGAGTTTGCTCAATACTCCTTCAATGGGGATTATATGGGGACAGATGGGATGCGGTGGCGAGATTTGAGTGACAGAGAGAATGGGATGAAAGAGGTCTGGATTATCATGGCTGTCGAGTGGTTTGTGGTGCTTTTTCTTGCATATTACCTAGATCAAGCTGTATCATCATCAGGAAGTGTGAAATATCCTTTATTTTTCTTTCAAAGTGGAAGGAAGAAACTGTCATCTCGTAGGATGCATTCTTTGCAAAGGCAGGAATCTGAAGTGCTTATTCAGACGGACAAACCTGATGTTGGGCAAGAGATGGAGAAGGTCAACAAGTTGCTACTGGAACCGGATACAAGTCATGCAATTATTTGCAACAATCTCAAAAAGGTTTATACTGGAAGAGATGGAAACCCTGACAAATTTGCCGTGAGAGGGATGTCTCTTGCTTTGTCTCGAGGGGAGTGCTTTGGTATGCTTGGCCCTAATGGTGCTGGGAAGACCTCTTTTATTAATATGATGATTGGTCTGACAAAGTCAACCTCTGGCACGGCTTTTGTTCAAGGTCTGGACATCAACACTCAGATGGATGAAATATATACCAGCATGGGAGTTTGTCCACAGCATGACCTACTATGGGAAACCCTGACTGGAAGGGAGCATCTACTTTTTTATGGAAGACTTAAGAACCTCAAAGGTTCTGGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAGTCTATTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCAATTTCACTGATAGGTGATCCTAAAGTTGTTTACATGGATGAGCCCAGCACTGGACTTGATCCAGCTTCAAGACATAATCTATGGAATGTTGTGAAGCGGGCAAAACAAGATCGTGCAATCATCCTAACAACACATTCCATGGAAGAGGCAGAGGTTCTATGTGATCGTTTAGGAGTTTTTGTAGATGGCAGCTTGCAGTGCATAGGAAACCCAAAAGAGCTGAAAGCCAGATATGGAGGATCTTATGTGTTTACAATGACGACATCTTCAAATCACGAGGAAGAGGTGGAGAACTTAGTGCGGAGCCTCTCCCCAAATGCTAATAAGATATACCATCTCTCTGGAACCCAGAAGTTTGAGTTGCCGAAACATGAAGTCAAAATTGCAGATGTATTCCAAGCCGTGGAGAATGCAAAGAGCAAGTTCACAGTTTTTGCATGGGGTCTAGCTGACACTACCTTGGAGGATGTTTTCATCAAGGTCGCACTTGGGGCTCAAGCCTCCAATATCTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032502 GO:0032787 GO:0042218 GO:0042221 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0050896 GO:0051301 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko04016 map00270 map01100 map01110 map04016

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

963

Amino Acids

107.93

Weight (kDa)

6.47

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	286 - 572	8.9e-14	ABC-2 family transporter protein
ABC_tran	PF00005	663 - 807	2.2e-24	ABC transporter
AAA_21	PF13304	778 - 839	2.4e-08	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C	PF24526	873 - 923	1.1e-31	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11280
fragaria_vesca	FvH4_5g03160
malus_domestica	MD06G1090600.v1.1 MD14G1111500.v1.1
prunus_persica	Prupe.5G106200_v2.0.a1
pyrus_communis	pycom06g08630 pycom14g10630
rosa_chinensis	RchiOBHm_Chr7g0196631
rosa_laevigata	RLG00000004002
rosa_multiflora	Rmu_sc0006080.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259150
rosa_rugosa	Rorug07G0035500 Rorug07G0035600
rosa_samantha	Rh7AG159200 Rh7BG161200 Rh7CG167600 Rh7DG160500
rosa_wichuraiana	Rw7G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1151
AccB7I	CCANNNNNTGG	4 cut(s)	78, 202, 217, 2776
AciI	CCGC	6 cut(s)	356, 392, 955, 1621, 2470, 2674
AclWI	GGATC	8 cut(s)	321, 460, 620, 1018, 1526, 2384, 2426, 2620
AcoI	YGGCCR	2 cut(s)	64, 353
AcsI	RAATTY	7 cut(s)	198, 383, 544, 820, 973, 1307, 1976
AcuI	CTGAAG	2 cut(s)	980, 1851
AcvI	CACGTG	1 cut(s)	1113
AcyI	GRCGYC	1 cut(s)	1148
AfaI	GTAC	4 cut(s)	905, 992, 1018, 1099
AflII	CTTAAG	1 cut(s)	2237
AflIII	ACRYGT	2 cut(s)	1023, 1110
AjnI	CCWGG	1 cut(s)	1540
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
Alw26I	GTCTC	4 cut(s)	261, 1073, 2001, 2013
AlwI	GGATC	8 cut(s)	321, 460, 620, 1018, 1526, 2384, 2426, 2620
AlwNI	CAGNNNCTG	1 cut(s)	78
Ama87I	CYCGRG	2 cut(s)	84, 2010
AoxI	GGCC	3 cut(s)	64, 353, 2035
ApeKI	GCWGC	2 cut(s)	952, 2562
ApoI	RAATTY	7 cut(s)	198, 383, 544, 820, 973, 1307, 1976
AseI	ATTAAT	3 cut(s)	705, 837, 2067
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	1214, 2036
AsuC2I	CCSGG	3 cut(s)	347, 481, 1136
AsuHPI	GGTGA	5 cut(s)	406, 469, 748, 1220, 2399
AvaI	CYCGRG	2 cut(s)	84, 2010
AvaII	GGWCC	1 cut(s)	1214
BanII	GRGCYC	2 cut(s)	2418, 2869
BauI	CACGAG	1 cut(s)	2648
BbrPI	CACGTG	1 cut(s)	1113
BbsI	GAAGAC	4 cut(s)	638, 1421, 2060, 2239
BbvI	GCAGC	2 cut(s)	939, 2574
BccI	CCATC	8 cut(s)	490, 560, 1607, 1867, 1955, 2134, 2552, 2715
BceAI	ACGGC	6 cut(s)	51, 286, 1395, 1967, 2121, 2759
BcgI	CGANNNNNNTGC	2 cut(s)	2001, 2035
BciT130I	CCWGG	1 cut(s)	1542
BciVI	GTATCC	2 cut(s)	991, 1900
BcnI	CCSGG	3 cut(s)	347, 481, 1136
BcoDI	GTCTC	4 cut(s)	261, 1073, 2001, 2013
BfaI	CTAG	6 cut(s)	1007, 1388, 1509, 1529, 1718, 2819
BfmI	CTRYAG	2 cut(s)	1327, 1422
BfrI	CTTAAG	1 cut(s)	2237
BfuI	GTATCC	2 cut(s)	991, 1900
BisI	GCNGC	4 cut(s)	356, 953, 956, 2563
BlpI	GCTNAGC	1 cut(s)	2363
BlsI	GCNGC	4 cut(s)	357, 954, 957, 2564
Bme1390I	CCNGG	4 cut(s)	347, 481, 1136, 1542
Bme18I	GGWCC	1 cut(s)	1214
BmeT110I	CYCGRG	2 cut(s)	84, 2010
BmgT120I	GGNCC	2 cut(s)	1214, 2036
BmiI	GGNNCC	4 cut(s)	1468, 1902, 2678, 2719
BmrFI	CCNGG	4 cut(s)	347, 481, 1136, 1542
BmrI	ACTGGG	1 cut(s)	1464
BmsI	GCATC	5 cut(s)	662, 1341, 1608, 1794, 2224
BmuI	ACTGGG	1 cut(s)	1464
BpiI	GAAGAC	4 cut(s)	638, 1421, 2060, 2239
Bpu1102I	GCTNAGC	1 cut(s)	2363
BpuEI	CTTGAG	2 cut(s)	1052, 2853
BpuMI	CCSGG	3 cut(s)	347, 481, 1136
BsaAI	YACGTR	1 cut(s)	1113
BsaHI	GRCGYC	1 cut(s)	1148
BsaJI	CCNNGG	4 cut(s)	345, 2511, 2775, 2832
BsaWI	WCCGGW	1 cut(s)	1903
BsaXI	ACNNNNNCTCC	2 cut(s)	2538, 2568
Bse1I	ACTGG	9 cut(s)	222, 576, 1065, 1158, 1459, 1902, 1957, 2209, 2428
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	1542
BseDI	CCNNGG	4 cut(s)	345, 2511, 2775, 2832
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	7 cut(s)	115, 219, 606, 771, 981, 1084, 2150
BseNI	ACTGG	9 cut(s)	222, 576, 1065, 1158, 1459, 1902, 1957, 2209, 2428
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	939, 2574
BseYI	CCCAGC	2 cut(s)	2048, 2417
BshFI	GGCC	3 cut(s)	66, 355, 2037
BsiHKCI	CYCGRG	2 cut(s)	84, 2010
BsiSI	CCGG	5 cut(s)	44, 347, 480, 1136, 1904
BslFI	GGGAC	3 cut(s)	146, 315, 1621
BsmAI	GTCTC	4 cut(s)	261, 1073, 2001, 2013
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	3 cut(s)	146, 315, 1621
BsmI	GAATGC	2 cut(s)	1807, 2788
BsnI	GGCC	3 cut(s)	66, 355, 2037
BsoBI	CYCGRG	2 cut(s)	84, 2010
Bsp1286I	GDGCHC	2 cut(s)	2418, 2869
Bsp1720I	GCTNAGC	1 cut(s)	2363
Bsp19I	CCATGG	1 cut(s)	2511
BspACI	CCGC	6 cut(s)	356, 392, 955, 1621, 2470, 2674
BspANI	GGCC	3 cut(s)	66, 355, 2037
BspCNI	CTCAG	7 cut(s)	114, 220, 605, 772, 980, 1083, 2149
BspHI	TCATGA	1 cut(s)	1185
BspLI	GGNNCC	4 cut(s)	1468, 1902, 2678, 2719
BspMAI	CTGCAG	1 cut(s)	1426
BspPI	GGATC	8 cut(s)	321, 460, 620, 1018, 1526, 2384, 2426, 2620
BspTI	CTTAAG	1 cut(s)	2237
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	9 cut(s)	222, 576, 1065, 1158, 1459, 1902, 1957, 2209, 2428
BssECI	CCNNGG	4 cut(s)	345, 2511, 2775, 2832
BssNI	GRCGYC	1 cut(s)	1148
BssSI	CACGAG	1 cut(s)	2648
BssT1I	CCWWGG	2 cut(s)	2511, 2832
Bst2BI	CACGAG	1 cut(s)	2648
Bst2UI	CCWGG	1 cut(s)	1542
Bst4CI	ACNGT	7 cut(s)	13, 310, 469, 1252, 1525, 1791, 2803
Bst6I	CTCTTC	5 cut(s)	1090, 1951, 2348, 2511, 2649
BstACI	GRCGYC	1 cut(s)	1148
BstAFI	CTTAAG	1 cut(s)	2237
BstAPI	GCANNNNNTGC	1 cut(s)	1813
BstBAI	YACGTR	1 cut(s)	1113
BstC8I	GCNNGC	4 cut(s)	31, 73, 2472, 2567
BstDSI	CCRYGG	2 cut(s)	2511, 2775
BstHHI	GCGC	1 cut(s)	768
BstMAI	GTCTC	4 cut(s)	261, 1073, 2001, 2013
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 361, 370, 763, 1813, 2571, 2864
BstNI	CCWGG	1 cut(s)	1542
BstNSI	RCATGY	3 cut(s)	761, 1027, 1270
BstSCI	CCNGG	4 cut(s)	345, 479, 1134, 1540
BstSFI	CTRYAG	2 cut(s)	1327, 1422
BstV1I	GCAGC	2 cut(s)	939, 2574
BstV2I	GAAGAC	4 cut(s)	638, 1421, 2060, 2239
BstX2I	RGATCY	3 cut(s)	452, 1010, 2612
BstXI	CCANNNNNNTGG	2 cut(s)	2714, 2884
BstYI	RGATCY	3 cut(s)	452, 1010, 2612
BsuI	GTATCC	2 cut(s)	991, 1900
BsuRI	GGCC	3 cut(s)	66, 355, 2037
BtgI	CCRYGG	2 cut(s)	2511, 2775
BtsI	GCAGTG	2 cut(s)	2277, 2576
BtsIMutI	CAGTG	7 cut(s)	1151, 1316, 1521, 2277, 2378, 2421, 2576
Cac8I	GCNNGC	4 cut(s)	31, 73, 2472, 2567
CaiI	CAGNNNCTG	1 cut(s)	78
CciI	TCATGA	1 cut(s)	1185
CfoI	GCGC	1 cut(s)	768
Cfr13I	GGNCC	2 cut(s)	1214, 2036
CseI	GACGC	2 cut(s)	1432, 2356
Csp6I	GTAC	4 cut(s)	904, 991, 1017, 1098
CviQI	GTAC	4 cut(s)	904, 991, 1017, 1098
EaeI	YGGCCR	2 cut(s)	64, 353
Eam1104I	CTCTTC	5 cut(s)	1090, 1951, 2348, 2511, 2649
EarI	CTCTTC	5 cut(s)	1090, 1951, 2348, 2511, 2649
Eco130I	CCWWGG	2 cut(s)	2511, 2832
Eco24I	GRGCYC	2 cut(s)	2418, 2869
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	1214
Eco57I	CTGAAG	2 cut(s)	980, 1851
Eco72I	CACGTG	1 cut(s)	1113
Eco88I	CYCGRG	2 cut(s)	84, 2010
EcoRI	GAATTC	2 cut(s)	544, 820
EcoRII	CCWGG	1 cut(s)	1540
EcoRV	GATATC	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	2511, 2832
EcoT22I	ATGCAT	2 cut(s)	1200, 1809
EcoT38I	GRGCYC	2 cut(s)	2418, 2869
ErhI	CCWWGG	2 cut(s)	2511, 2832
Esp3I	CGTCTC	1 cut(s)	261
FaqI	GGGAC	3 cut(s)	146, 315, 1621
FauI	CCCGC	1 cut(s)	2463
FauNDI	CATATG	1 cut(s)	899
Fnu4HI	GCNGC	4 cut(s)	356, 953, 956, 2563
FriOI	GRGCYC	2 cut(s)	2418, 2869
Fsp4HI	GCNGC	4 cut(s)	356, 953, 956, 2563
FspBI	CTAG	6 cut(s)	1007, 1388, 1509, 1529, 1718, 2819
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	4 cut(s)	356, 953, 956, 2563
GsaI	CCCAGC	2 cut(s)	2052, 2421
HaeIII	GGCC	3 cut(s)	66, 355, 2037
HapII	CCGG	5 cut(s)	44, 347, 480, 1136, 1904
HgaI	GACGC	2 cut(s)	1432, 2356
HhaI	GCGC	1 cut(s)	768
Hin1I	GRCGYC	1 cut(s)	1148
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HincII	GTYRAC	4 cut(s)	208, 1146, 1885, 2094
HindII	GTYRAC	4 cut(s)	208, 1146, 1885, 2094
HinfI	GANTC	9 cut(s)	50, 82, 376, 434, 596, 608, 1182, 1826, 2279
HpaII	CCGG	5 cut(s)	44, 347, 480, 1136, 1904
HphI	GGTGA	5 cut(s)	406, 469, 748, 1220, 2399
Hpy99I	CGWCG	1 cut(s)	2372
HpyAV	CCTTC	8 cut(s)	197, 643, 1004, 1597, 1773, 1873, 2202, 2352
HpyCH4III	ACNGT	7 cut(s)	13, 310, 469, 1252, 1525, 1791, 2803
HpyCH4IV	ACGT	3 cut(s)	405, 1112, 1148
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 361, 370, 763, 1813, 2571, 2864
HpySE526I	ACGT	3 cut(s)	405, 1112, 1148
Hsp92I	GRCGYC	1 cut(s)	1148
HspAI	GCGC	1 cut(s)	766
LmnI	GCTCC	4 cut(s)	189, 1466, 2212, 2676
Lsp1109I	GCAGC	2 cut(s)	939, 2574
LweI	GCATC	5 cut(s)	662, 1341, 1608, 1794, 2224
MaeI	CTAG	6 cut(s)	1007, 1388, 1509, 1529, 1718, 2819
MaeII	ACGT	3 cut(s)	405, 1112, 1148
MaeIII	GTNAC	5 cut(s)	463, 806, 1149, 1208, 1637
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	3 cut(s)	452, 1010, 2612
MhlI	GDGCHC	2 cut(s)	2418, 2869
MlyI	GAGTC	3 cut(s)	59, 76, 443
MmeI	TCCRAC	1 cut(s)	1496
Mph1103I	ATGCAT	2 cut(s)	1200, 1809
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	9 cut(s)	113, 705, 837, 888, 918, 1304, 2067, 2238, 2261
MslI	CAYNNNNRTG	2 cut(s)	38, 2138
MspCI	CTTAAG	1 cut(s)	2237
MspI	CCGG	5 cut(s)	44, 347, 480, 1136, 1904
MspR9I	CCNGG	4 cut(s)	347, 481, 1136, 1542
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	2 cut(s)	1807, 2788
MvaI	CCWGG	1 cut(s)	1542
MwoI	GCNNNNNNNGC	7 cut(s)	72, 361, 370, 763, 1813, 2571, 2864
NciI	CCSGG	3 cut(s)	347, 481, 1136
NcoI	CCATGG	1 cut(s)	2511
NdeI	CATATG	1 cut(s)	899
NlaIV	GGNNCC	4 cut(s)	1468, 1902, 2678, 2719
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	3 cut(s)	1149, 1208, 1637
NsiI	ATGCAT	2 cut(s)	1200, 1809
NspI	RCATGY	3 cut(s)	761, 1027, 1270
PaeR7I	CTCGAG	2 cut(s)	84, 2010
PagI	TCATGA	1 cut(s)	1185
PciI	ACATGT	1 cut(s)	1023
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 647
PctI	GAATGC	2 cut(s)	1807, 2788
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	6 cut(s)	376, 596, 608, 1182, 1826, 2279
PflFI	GACNNNGTC	1 cut(s)	2089
PflMI	CCANNNNNTGG	4 cut(s)	78, 202, 217, 2776
PkrI	GCNGC	4 cut(s)	357, 954, 957, 2564
PleI	GAGTC	3 cut(s)	58, 76, 442
PmaCI	CACGTG	1 cut(s)	1113
PmlI	CACGTG	1 cut(s)	1113
PpsI	GAGTC	3 cut(s)	58, 76, 442
Ppu21I	YACGTR	1 cut(s)	1113
PscI	ACATGT	1 cut(s)	1023
PshBI	ATTAAT	3 cut(s)	705, 837, 2067
Psp6I	CCWGG	1 cut(s)	1540
PspCI	CACGTG	1 cut(s)	1113
PspFI	CCCAGC	2 cut(s)	2048, 2417
PspGI	CCWGG	1 cut(s)	1540
PspN4I	GGNNCC	4 cut(s)	1468, 1902, 2678, 2719
PspPI	GGNCC	2 cut(s)	1214, 2036
PspXI	VCTCGAGB	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	1426
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	3 cut(s)	452, 1010, 2612
PsyI	GACNNNGTC	1 cut(s)	2089
RsaI	GTAC	4 cut(s)	905, 992, 1018, 1099
RsaNI	GTAC	4 cut(s)	904, 991, 1017, 1098
RseI	CAYNNNNRTG	2 cut(s)	38, 2138
SaqAI	TTAA	9 cut(s)	113, 705, 837, 888, 918, 1304, 2067, 2238, 2261
SatI	GCNGC	4 cut(s)	356, 953, 956, 2563
Sau96I	GGNCC	2 cut(s)	1214, 2036
SchI	GAGTC	3 cut(s)	59, 76, 443
ScrFI	CCNGG	4 cut(s)	347, 481, 1136, 1542
SduI	GDGCHC	2 cut(s)	2418, 2869
SfaNI	GCATC	5 cut(s)	662, 1341, 1608, 1794, 2224
SfcI	CTRYAG	2 cut(s)	1327, 1422
Sfr274I	CTCGAG	2 cut(s)	84, 2010
SinI	GGWCC	1 cut(s)	1214
SlaI	CTCGAG	2 cut(s)	84, 2010
SmiMI	CAYNNNNRTG	2 cut(s)	38, 2138
SmlI	CTYRAG	6 cut(s)	18, 84, 1031, 2010, 2237, 2868
SmoI	CTYRAG	6 cut(s)	18, 84, 1031, 2010, 2237, 2868
SsiI	CCGC	6 cut(s)	356, 392, 955, 1621, 2470, 2674
SspMI	CTAG	6 cut(s)	1007, 1388, 1509, 1529, 1718, 2819
StyD4I	CCNGG	4 cut(s)	345, 479, 1134, 1540
StyI	CCWWGG	2 cut(s)	2511, 2832
TaaI	ACNGT	7 cut(s)	13, 310, 469, 1252, 1525, 1791, 2803
TaiI	ACGT	3 cut(s)	408, 1115, 1151
TaqI	TCGA	4 cut(s)	85, 494, 1683, 2011
TauI	GCSGC	2 cut(s)	358, 958
TfiI	GAWTC	6 cut(s)	376, 596, 608, 1182, 1826, 2279
Tru1I	TTAA	9 cut(s)	113, 705, 837, 888, 918, 1304, 2067, 2238, 2261
Tru9I	TTAA	9 cut(s)	113, 705, 837, 888, 918, 1304, 2067, 2238, 2261
TscAI	CASTG	7 cut(s)	1158, 1323, 1528, 2277, 2385, 2428, 2576
TseFI	GTSAC	3 cut(s)	1149, 1208, 1637
TseI	GCWGC	2 cut(s)	952, 2562
Tsp45I	GTSAC	3 cut(s)	1149, 1208, 1637
TspGWI	ACGGA	6 cut(s)	142, 279, 402, 1227, 1488, 1862
TspRI	CASTG	7 cut(s)	1158, 1323, 1528, 2277, 2385, 2428, 2576
Tth111I	GACNNNGTC	1 cut(s)	2089
Van91I	CCANNNNNTGG	4 cut(s)	78, 202, 217, 2776
Vha464I	CTTAAG	1 cut(s)	2237
VpaK11BI	GGWCC	1 cut(s)	1214
VspI	ATTAAT	3 cut(s)	705, 837, 2067
XapI	RAATTY	7 cut(s)	198, 383, 544, 820, 973, 1307, 1976
XbaI	TCTAGA	1 cut(s)	1528
XceI	RCATGY	3 cut(s)	761, 1027, 1270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XhoI	CTCGAG	2 cut(s)	84, 2010
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	6 cut(s)	1007, 1388, 1509, 1529, 1718, 2819
ZraI	GACGTC	1 cut(s)	1149
Zsp2I	ATGCAT	2 cut(s)	1200, 1809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.