RchiOBHm_Chr7g0196631

1-aminocyclopropane-1-carboxylate

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
14606916 .. 14609925
3010 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17590

Sequence Viewer

Length: 1467 bp
ATGGGATTCACTTTGAGCAACCAACAGCAACTGTTGTCTAAGATAGCAACCGGCAATGGACATGGCGAAAACACGCCATATTTTGATGGCTGGAAGGCGTTTGATAGTAATCCTTACCACCCCACCGCGAACCCTCAAGGGGTTATTCAGATGGGTCTAGCAGAAAATCAACTTTCTTTTGATTTGATTCAAGAATGGGTTCTGAAAAACCCAGAAGCCTCCATTTGCACTGCACAAGGAGCAAAAGAATTCAAGGACATAGCCATCTTTCAAGACTATCATGGCCTGCCAGAGTTCAGAAATGCTGTTGCAAATTTCATGGGAAAAGTGAGAGGAAATCGAGTCACATTCGACCCTGACCGCATTGTTATGAGCGGCGGAGCAACCGGAGCTCACGAGATGATTGCCTTTTGCTTGGCTGATCCCGGAGAGGCATTTCTGGTTCCCGTTCCTTATTATCCTGGATTCGATAGAGATTTGAGATGGCGAACAGGGGTACAACTTCTTCCAGTTGCTTGTGAAAGCTCCAACAATTTCAAGATCACCAGAGCAGCCTTGGAAGATGCCTATGAGAAAGCCCAAAAGGCCAACATCAGAGTTAAAGGCTTACTCATTACCAACCCCTCAAACCCACTAGGCACAGTCCTAGACAGAGAGACCCTTAAAAGCCTAGTAACTTTCATCAATGAGAAGAATATCCACCTAGTCTCTGATGAGATCTATGCTGCCACTGTGTTCACTCAGCCTAGGTTCATCAGCATTGCTGAAATTCTCGAGGAAGAAGAAGTAGAATGCAACCGGGATCTGGTTCACATTGTCTACAGTCTTTCCAAGGACATGGGGTTCCCTGGCTTTAGGGTTGGGATAGTGTACTCATACAATGATGCAGTAGTGAATTGCGCGAGAAAGATGTCGAGTTTCGGGTTGGTTTCTACACAAACTCAGCATCTAATCGCATCGATGCTATCAGACAATGAGTTTGTGGACAGATTCATTGTAGAAAGTGCCAAGAGGTTGAAAGCAAGGCACACGAGATTCACTGTGGGACTTGAGGAACAAGGTACCACTTGTTTGAAGAGCAATGGTGGCTTGTTTGTGTGGATGGACTTGCACAAGCATTTAAAGGAGCAAACTTTTGAAGCAGAGATGGCATTGTGGAGAACCATAATCCATCAAGTTAAGCTCAATGTGTCACCCGGTGTTTCTTTTCATTGCCCCGAACCGGGTTGGTTCAGGGTTTGTTTTGCCAACATGGACGACCAGACTATGGAAGTTGCTTTGGAACGAATCAGAAACTTTGTGCTTCAAGACAAGGATGCTGTGGTAGCAATTAAGAAGAAGAGCTGCTGGCAAAGTAATAAAAAGCTGAGTCTCAGCTTCAAATCCTTCAATTTTCGAATATTGGATGAGGTCAGCATGTCACCGCATTCCCCTATTCCACAGTCACCTCTTGTTCGAGCCACTTAG

Protein Analysis

488

Amino Acids

54.89

Weight (kDa)

6.37

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 49 - 430 6e-110 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1061
AccB1I GGYRCC 1 cut(s) 1061
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 819
AccII CGCG 2 cut(s) 128, 902
AciI CCGC 5 cut(s) 126, 361, 375, 378, 1424
AclWI GGATC 2 cut(s) 416, 810
AcsI RAATTY 3 cut(s) 248, 313, 768
AdeI CACNNNGTG 1 cut(s) 1199
AfaI GTAC 3 cut(s) 498, 872, 1063
AfiI CCNNNNNNNGG 5 cut(s) 139, 805, 1222, 1223, 1267
AjnI CCWGG 2 cut(s) 460, 847
AloI GAACNNNNNNTCC 2 cut(s) 827, 859
AluBI AGCT 6 cut(s) 392, 525, 1183, 1344, 1366, 1377
AluI AGCT 6 cut(s) 392, 525, 1183, 1344, 1366, 1377
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 3 cut(s) 650, 712, 1376
AlwI GGATC 2 cut(s) 416, 810
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 2 cut(s) 283, 585
ApeKI GCWGC 3 cut(s) 551, 725, 1344
ApoI RAATTY 3 cut(s) 248, 313, 768
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
Asp700I GAANNNNTTC 1 cut(s) 198
Asp718I GGTACC 1 cut(s) 1061
AspA2I CCTAGG 1 cut(s) 746
AspLEI GCGC 1 cut(s) 902
AsuC2I CCSGG 4 cut(s) 426, 800, 1197, 1224
AsuHPI GGTGA 4 cut(s) 535, 1185, 1413, 1437
AsuII TTCGAA 1 cut(s) 1396
AvaI CYCGRG 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 746
BanI GGYRCC 1 cut(s) 1061
BanII GRGCYC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BauI CACGAG 2 cut(s) 395, 1030
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 3 cut(s) 563, 712, 1331
BccI CCATC 7 cut(s) 80, 145, 272, 477, 1096, 1141, 1179
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 2 cut(s) 462, 849
BcnI CCSGG 4 cut(s) 426, 800, 1197, 1224
BcoDI GTCTC 3 cut(s) 650, 712, 1376
BfaI CTAG 6 cut(s) 158, 635, 647, 671, 704, 747
BfmI CTRYAG 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 584
BglII AGATCT 1 cut(s) 717
BisI GCNGC 4 cut(s) 376, 552, 726, 1345
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 4 cut(s) 377, 553, 727, 1346
Bme1390I CCNGG 6 cut(s) 426, 462, 800, 849, 1197, 1224
BmeT110I CYCGRG 1 cut(s) 773
BmiI GGNNCC 3 cut(s) 444, 845, 1063
BmrFI CCNGG 6 cut(s) 426, 462, 800, 849, 1197, 1224
BmsI GCATC 6 cut(s) 553, 874, 951, 955, 965, 1306
Bpu14I TTCGAA 1 cut(s) 1396
BpuEI CTTGAG 2 cut(s) 120, 1070
BpuMI CCSGG 4 cut(s) 426, 800, 1197, 1224
Bsa29I ATCGAT 1 cut(s) 959
BsaBI GATNNNNATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 555, 746, 831, 847
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 805, 1222, 1223, 1267
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 4 cut(s) 61, 759, 1087, 1210
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 2 cut(s) 462, 849
BseCI ATCGAT 1 cut(s) 959
BseDI CCNNGG 4 cut(s) 555, 746, 831, 847
BseGI GGATG 3 cut(s) 1107, 1321, 1411
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 5 cut(s) 139, 805, 1222, 1223, 1267
BseMI GCAATG 4 cut(s) 61, 759, 1087, 1210
BseMII CTCAG 4 cut(s) 755, 956, 1358, 1387
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 3 cut(s) 563, 712, 1331
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 128, 902
BshFI GGCC 2 cut(s) 285, 587
BshNI GGYRCC 1 cut(s) 1061
BshVI ATCGAT 1 cut(s) 959
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 6 cut(s) 51, 387, 426, 799, 1197, 1223
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 5 cut(s) 139, 805, 1222, 1223, 1267
BsmAI GTCTC 3 cut(s) 650, 712, 1376
BsmFI GGGAC 1 cut(s) 1059
BsmI GAATGC 2 cut(s) 797, 1426
BsnI GGCC 2 cut(s) 285, 587
Bso31I GGTCTC 1 cut(s) 650
BsoBI CYCGRG 1 cut(s) 773
Bsp119I TTCGAA 1 cut(s) 1396
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 4 cut(s) 421, 540, 717, 802
BspACI CCGC 5 cut(s) 126, 361, 375, 378, 1424
BspANI GGCC 2 cut(s) 285, 587
BspCNI CTCAG 4 cut(s) 754, 955, 1359, 1386
BspDI ATCGAT 1 cut(s) 959
BspFNI CGCG 2 cut(s) 128, 902
BspLI GGNNCC 3 cut(s) 444, 845, 1063
BspPI GGATC 2 cut(s) 416, 810
BspQI GCTCTTC 2 cut(s) 1070, 1334
BspT104I TTCGAA 1 cut(s) 1396
BspT107I GGYRCC 1 cut(s) 1061
BspTNI GGTCTC 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 4 cut(s) 61, 759, 1087, 1210
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 555, 746, 831, 847
BssMI GATC 4 cut(s) 421, 540, 717, 802
BssSI CACGAG 2 cut(s) 395, 1030
BssT1I CCWWGG 3 cut(s) 555, 746, 831
Bst2BI CACGAG 2 cut(s) 395, 1030
Bst2UI CCWGG 2 cut(s) 462, 849
Bst4CI ACNGT 6 cut(s) 33, 643, 733, 824, 1042, 1443
Bst6I CTCTTC 2 cut(s) 1070, 1334
BstBI TTCGAA 1 cut(s) 1396
BstC8I GCNNGC 2 cut(s) 287, 1349
BstDEI CTNAG 6 cut(s) 39, 741, 942, 1367, 1373, 1464
BstF5I GGATG 3 cut(s) 1107, 1321, 1411
BstFNI CGCG 2 cut(s) 128, 902
BstHHI GCGC 1 cut(s) 902
BstKTI GATC 4 cut(s) 424, 543, 720, 805
BstMAI GTCTC 3 cut(s) 650, 712, 1376
BstMBI GATC 4 cut(s) 421, 540, 717, 802
BstMWI GCNNNNNNNGC 6 cut(s) 239, 389, 584, 1086, 1148, 1325
BstNI CCWGG 2 cut(s) 462, 849
BstNSI RCATGY 1 cut(s) 1420
BstSCI CCNGG 6 cut(s) 424, 460, 798, 847, 1195, 1222
BstSFI CTRYAG 1 cut(s) 820
BstUI CGCG 2 cut(s) 128, 902
BstV1I GCAGC 3 cut(s) 563, 712, 1331
BstX2I RGATCY 2 cut(s) 717, 802
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 2 cut(s) 717, 802
Bsu15I ATCGAT 1 cut(s) 959
BsuRI GGCC 2 cut(s) 285, 587
BsuTUI ATCGAT 1 cut(s) 959
BtsCI GGATG 3 cut(s) 1107, 1321, 1411
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 729, 1038
Cac8I GCNNGC 2 cut(s) 287, 1349
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 1 cut(s) 902
Cfr10I RCCGGY 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 959
Csp6I GTAC 3 cut(s) 497, 871, 1062
CviAII CATG 6 cut(s) 62, 281, 319, 838, 1252, 1417
CviQI GTAC 3 cut(s) 497, 871, 1062
DdeI CTNAG 6 cut(s) 39, 741, 942, 1367, 1373, 1464
DpnI GATC 4 cut(s) 423, 542, 719, 804
DpnII GATC 4 cut(s) 421, 540, 717, 802
DraI TTTAAA 1 cut(s) 1122
DraIII CACNNNGTG 1 cut(s) 1199
Eam1104I CTCTTC 2 cut(s) 1070, 1334
EarI CTCTTC 2 cut(s) 1070, 1334
EciI GGCGGA 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 3 cut(s) 555, 746, 831
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 650
Eco53kI GAGCTC 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 460, 847
EcoT14I CCWWGG 3 cut(s) 555, 746, 831
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 3 cut(s) 555, 746, 831
FaeI CATG 6 cut(s) 65, 284, 322, 841, 1255, 1420
FaqI GGGAC 1 cut(s) 1059
FatI CATG 6 cut(s) 61, 280, 318, 837, 1251, 1416
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 4 cut(s) 376, 552, 726, 1345
FokI GGATG 3 cut(s) 1114, 1328, 1418
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 4 cut(s) 376, 552, 726, 1345
FspBI CTAG 6 cut(s) 158, 635, 647, 671, 704, 747
GlaI GCGC 1 cut(s) 901
GluI GCNGC 4 cut(s) 376, 552, 726, 1345
HaeIII GGCC 2 cut(s) 285, 587
HapII CCGG 6 cut(s) 51, 387, 426, 799, 1197, 1223
HhaI GCGC 1 cut(s) 902
Hin1II CATG 6 cut(s) 65, 284, 322, 841, 1255, 1420
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HinfI GANTC 8 cut(s) 6, 187, 342, 465, 990, 1035, 1287, 1369
HpaII CCGG 6 cut(s) 51, 387, 426, 799, 1197, 1223
HphI GGTGA 4 cut(s) 535, 1185, 1413, 1437
Hpy166II GTNNAC 5 cut(s) 738, 811, 820, 871, 985
Hpy188I TCNGA 7 cut(s) 150, 204, 299, 596, 712, 970, 1292
Hpy188III TCNNGA 6 cut(s) 191, 272, 395, 538, 773, 1307
Hpy8I GTNNAC 5 cut(s) 738, 811, 820, 871, 985
HpyAV CCTTC 2 cut(s) 88, 1396
HpyCH4III ACNGT 6 cut(s) 33, 643, 733, 824, 1042, 1443
HpyCH4V TGCA 6 cut(s) 228, 233, 311, 795, 887, 1111
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 389, 584, 1086, 1148, 1325
HpyF3I CTNAG 6 cut(s) 39, 741, 942, 1367, 1373, 1464
Hsp92II CATG 6 cut(s) 65, 284, 322, 841, 1255, 1420
HspAI GCGC 1 cut(s) 900
KpnI GGTACC 1 cut(s) 1065
Kzo9I GATC 4 cut(s) 421, 540, 717, 802
LguI GCTCTTC 2 cut(s) 1070, 1334
LmnI GCTCC 5 cut(s) 239, 380, 389, 530, 1126
Lsp1109I GCAGC 3 cut(s) 563, 712, 1331
LweI GCATC 6 cut(s) 553, 874, 951, 955, 965, 1306
MaeI CTAG 6 cut(s) 158, 635, 647, 671, 704, 747
MaeIII GTNAC 5 cut(s) 343, 673, 1191, 1419, 1443
MalI GATC 4 cut(s) 423, 542, 719, 804
MbiI CCGCTC 1 cut(s) 375
MboI GATC 4 cut(s) 421, 540, 717, 802
MboII GAAGA 8 cut(s) 497, 572, 703, 791, 794, 1087, 1348, 1351
MflI RGATCY 2 cut(s) 717, 802
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 7 cut(s) 248, 313, 532, 768, 895, 1329, 1390
MlyI GAGTC 2 cut(s) 351, 1378
MmeI TCCRAC 1 cut(s) 552
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 5 cut(s) 600, 663, 1121, 1179, 1332
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 6 cut(s) 51, 387, 426, 799, 1197, 1223
MspR9I CCNGG 6 cut(s) 426, 462, 800, 849, 1197, 1224
Mva1269I GAATGC 2 cut(s) 797, 1426
MvaI CCWGG 2 cut(s) 462, 849
MvnI CGCG 2 cut(s) 128, 902
MwoI GCNNNNNNNGC 6 cut(s) 239, 389, 584, 1086, 1148, 1325
NciI CCSGG 4 cut(s) 426, 800, 1197, 1224
NdeII GATC 4 cut(s) 421, 540, 717, 802
NlaIII CATG 6 cut(s) 65, 284, 322, 841, 1255, 1420
NlaIV GGNNCC 3 cut(s) 444, 845, 1063
NmuCI GTSAC 4 cut(s) 343, 1191, 1419, 1443
NspI RCATGY 1 cut(s) 1420
NspV TTCGAA 1 cut(s) 1396
PaeR7I CTCGAG 1 cut(s) 773
PciSI GCTCTTC 2 cut(s) 1070, 1334
PctI GAATGC 2 cut(s) 797, 1426
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 6 cut(s) 6, 187, 465, 990, 1035, 1287
PflMI CCANNNNNTGG 1 cut(s) 1267
PfoI TCCNGGA 2 cut(s) 424, 460
PkrI GCNGC 4 cut(s) 377, 553, 727, 1346
PleI GAGTC 2 cut(s) 350, 1377
PpsI GAGTC 2 cut(s) 350, 1377
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 460, 847
PspGI CCWGG 2 cut(s) 460, 847
PspN4I GGNNCC 3 cut(s) 444, 845, 1063
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 717, 802
RsaI GTAC 3 cut(s) 498, 872, 1063
RsaNI GTAC 3 cut(s) 497, 871, 1062
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 394
SapI GCTCTTC 2 cut(s) 1070, 1334
SaqAI TTAA 5 cut(s) 600, 663, 1121, 1179, 1332
SatI GCNGC 4 cut(s) 376, 552, 726, 1345
Sau3AI GATC 4 cut(s) 421, 540, 717, 802
SchI GAGTC 2 cut(s) 351, 1378
ScrFI CCNGG 6 cut(s) 426, 462, 800, 849, 1197, 1224
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 6 cut(s) 553, 874, 951, 955, 965, 1306
SfcI CTRYAG 1 cut(s) 820
Sfr274I CTCGAG 1 cut(s) 773
SfuI TTCGAA 1 cut(s) 1396
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 3 cut(s) 135, 773, 1049
SmoI CTYRAG 3 cut(s) 135, 773, 1049
Sse9I AATT 7 cut(s) 248, 313, 532, 768, 895, 1329, 1390
SsiI CCGC 5 cut(s) 126, 361, 375, 378, 1424
SspI AATATT 1 cut(s) 1401
SspMI CTAG 6 cut(s) 158, 635, 647, 671, 704, 747
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 6 cut(s) 424, 460, 798, 847, 1195, 1222
StyI CCWWGG 3 cut(s) 555, 746, 831
TaaI ACNGT 6 cut(s) 33, 643, 733, 824, 1042, 1443
TaqI TCGA 8 cut(s) 340, 351, 468, 774, 914, 959, 1396, 1456
TasI AATT 7 cut(s) 248, 313, 532, 768, 895, 1329, 1390
TatI WGTACW 1 cut(s) 870
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 6 cut(s) 6, 187, 465, 990, 1035, 1287
Tru1I TTAA 5 cut(s) 600, 663, 1121, 1179, 1332
Tru9I TTAA 5 cut(s) 600, 663, 1121, 1179, 1332
TscAI CASTG 3 cut(s) 235, 736, 1045
TseFI GTSAC 4 cut(s) 343, 1191, 1419, 1443
TseI GCWGC 3 cut(s) 551, 725, 1344
Tsp45I GTSAC 4 cut(s) 343, 1191, 1419, 1443
TspDTI ATGAA 5 cut(s) 307, 670, 742, 982, 1199
TspRI CASTG 3 cut(s) 235, 736, 1045
Van91I CCANNNNNTGG 1 cut(s) 1267
XapI RAATTY 3 cut(s) 248, 313, 768
XceI RCATGY 1 cut(s) 1420
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 773
XmaJI CCTAGG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 6 cut(s) 158, 635, 647, 671, 704, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.