Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012840

Physical Location & Seq

Genomic Coordinates Reverse (-)

13858496 .. 13860128

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGGTTTACTTTGAGCAACCAACAGCAACTGTTGTCTAAGATAGCAACAGGTAATGGCCACGGCGAAAACTCTCCATATTTTGATGGATGGAAGGCTTATGATAGTGATCCTTTTCATCCCACCAAGAACCCTAATGGGGTTATCCAGATGGGTCTTGCAGAAAATCAAATGTGTTTTGATTTGATCCAAGAGTGGATTTTGAACAATCCAGAAGCCTCCATTTGCACAGAAGCAGGGGTGAATGAATTCAAGGACATAGCCATATTTCAGGATTATCATGGATTGCCAGAGTTTAGAAATGCTGTTGCAAATTTTATGGGAAAAGTGAGAGGAAATCGTGTCACATTCGAAGCCGACCGGATTGTTATGAGCGGAGGAGCTACTGGAGCTCATGAGATGATAGCCTTTTGCTTGGCTGATCCTGGAGATGCATTTCTGGTGCCCGTTCCTTATTATCCAGGTTTTGATCGAGATTTGGGATGGCGAACGGGAGTACAACTGATTCCGGTTGCCTGTGACAGCTCCAACAATTTCAAAGTCACCAGAGCAGCATTGGAAGCTGCCTATGAGAAAGCTCAGATTGCAAACATCAGAGTGAAGGGTTTACTCATTACTAACCCCTCAAACCCCTTAGGTACTGTCCTTGACCGAGATACCCTCAGAAGTTTAGTGACATTCATCAACGAAAAGAAAATCCACCTAGTCTGCGATGAAATCTATGCTGCCACCGTGTTCAGTCAGCCAAGTTTCATAAGCATAGCCGATCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032502 GO:0032787 GO:0042218 GO:0042221 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0050896 GO:0051301 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko04016 map00270 map01100 map01110 map04016

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

259

Amino Acids

28.43

Weight (kDa)

5.11

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11280
fragaria_vesca	FvH4_5g03160
malus_domestica	MD06G1090600.v1.1 MD14G1111500.v1.1
prunus_persica	Prupe.5G106200_v2.0.a1
pyrus_communis	pycom06g08630 pycom14g10630
rosa_chinensis	RchiOBHm_Chr7g0196631
rosa_laevigata	RLG00000004002
rosa_multiflora	Rmu_sc0006080.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259150
rosa_rugosa	Rorug07G0035500 Rorug07G0035600
rosa_samantha	Rh7AG159200 Rh7BG161200 Rh7CG167600 Rh7DG160500
rosa_wichuraiana	Rw7G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	3 cut(s)	104, 181, 416
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	248, 313
AfaI	GTAC	2 cut(s)	498, 640
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	205, 253, 538
AjnI	CCWGG	2 cut(s)	424, 460
AluBI	AGCT	5 cut(s)	383, 392, 525, 563, 578
AluI	AGCT	5 cut(s)	383, 392, 525, 563, 578
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	3 cut(s)	104, 181, 416
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	551, 563, 725
ApoI	RAATTY	2 cut(s)	248, 313
Asp700I	GAANNNNTTC	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	253, 535
AsuII	TTCGAA	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	550, 563, 712
BccI	CCATC	4 cut(s)	80, 84, 145, 477
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	426, 462
BfaI	CTAG	1 cut(s)	704
BisI	GCNGC	3 cut(s)	552, 564, 726
BlsI	GCNGC	3 cut(s)	553, 565, 727
Bme1390I	CCNGG	2 cut(s)	426, 462
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	426, 462
BmsI	GCATC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	645, 677
BpmI	CTGGAG	2 cut(s)	408, 447
Bpu14I	TTCGAA	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	769
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	360, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	426, 462
BseCI	ATCGAT	1 cut(s)	769
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	95, 118, 488
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	593, 676
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	550, 563, 712
Bsh1285I	CGRYCG	2 cut(s)	361, 769
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	769
BsiEI	CGRYCG	2 cut(s)	361, 769
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	361, 509
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	394, 447
Bsp143I	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	592, 675
BspDI	ATCGAT	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	3 cut(s)	104, 181, 416
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
Bst2UI	CCWGG	2 cut(s)	426, 462
Bst4CI	ACNGT	3 cut(s)	33, 643, 733
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	39, 579, 634, 662
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	95, 118, 488
BstKTI	GATC	6 cut(s)	112, 189, 424, 472, 769, 773
BstMBI	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
BstMCI	CGRYCG	2 cut(s)	361, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 560, 584
BstNI	CCWGG	2 cut(s)	426, 462
BstSCI	CCNGG	2 cut(s)	424, 460
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	550, 563, 712
Bsu15I	ATCGAT	1 cut(s)	769
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	769
BtgI	CCRYGG	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	95, 118, 488
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	497, 639
CviAII	CATG	2 cut(s)	281, 395
CviQI	GTAC	2 cut(s)	497, 639
DdeI	CTNAG	4 cut(s)	39, 579, 634, 662
DpnI	GATC	6 cut(s)	111, 188, 423, 471, 768, 772
DpnII	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
EaeI	YGGCCR	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	392
Eco81I	CCTNAGG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	424, 460
EcoT22I	ATGCAT	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	2 cut(s)	284, 398
FatI	CATG	2 cut(s)	280, 394
Fnu4HI	GCNGC	3 cut(s)	552, 564, 726
FokI	GGATG	3 cut(s)	102, 105, 495
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	552, 564, 726
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	3 cut(s)	552, 564, 726
GsuI	CTGGAG	2 cut(s)	408, 447
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	2 cut(s)	361, 509
Hin1II	CATG	2 cut(s)	284, 398
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	361, 509
HphI	GGTGA	2 cut(s)	253, 535
Hpy166II	GTNNAC	2 cut(s)	9, 608
Hpy188I	TCNGA	3 cut(s)	582, 596, 665
Hpy188III	TCNNGA	5 cut(s)	148, 212, 272, 395, 473
Hpy8I	GTNNAC	2 cut(s)	9, 608
HpyAV	CCTTC	2 cut(s)	88, 595
HpyCH4III	ACNGT	3 cut(s)	33, 643, 733
HpyCH4V	TGCA	5 cut(s)	161, 228, 311, 434, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 560, 584
HpyF3I	CTNAG	4 cut(s)	39, 579, 634, 662
Hsp92II	CATG	2 cut(s)	284, 398
Kzo9I	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
LmnI	GCTCC	3 cut(s)	380, 389, 530
Lsp1109I	GCAGC	3 cut(s)	550, 563, 712
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	343, 518, 541, 673
MalI	GATC	6 cut(s)	111, 188, 423, 471, 768, 772
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
MhlI	GDGCHC	2 cut(s)	394, 447
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	248, 313, 532
MluNI	TGGCCA	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	5 cut(s)	229, 326, 371, 634, 671
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	2 cut(s)	361, 509
MspR9I	CCNGG	2 cut(s)	426, 462
MvaI	CCWGG	2 cut(s)	426, 462
MwoI	GCNNNNNNNGC	3 cut(s)	389, 560, 584
NdeII	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
NlaIII	CATG	2 cut(s)	284, 398
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	4 cut(s)	343, 518, 541, 673
NsiI	ATGCAT	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	351
PagI	TCATGA	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	553, 565, 727
Ple19I	CGATCG	1 cut(s)	769
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	424, 460
PspGI	CCWGG	2 cut(s)	424, 460
PspN4I	GGNNCC	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	31
PvuI	CGATCG	1 cut(s)	769
RsaI	GTAC	2 cut(s)	498, 640
RsaNI	GTAC	2 cut(s)	497, 639
RseI	CAYNNNNRTG	1 cut(s)	596
SacI	GAGCTC	1 cut(s)	394
SatI	GCNGC	3 cut(s)	552, 564, 726
Sau3AI	GATC	6 cut(s)	109, 186, 421, 469, 766, 770
ScrFI	CCNGG	2 cut(s)	426, 462
SduI	GDGCHC	2 cut(s)	394, 447
SetI	ASST	9 cut(s)	55, 385, 394, 466, 527, 565, 580, 640, 705
SfaNI	GCATC	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	596
Sse9I	AATT	3 cut(s)	248, 313, 532
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	2 cut(s)	424, 460
TaaI	ACNGT	3 cut(s)	33, 643, 733
TaqI	TCGA	3 cut(s)	351, 472, 769
TaqII	GACCGA	1 cut(s)	666
TasI	AATT	3 cut(s)	248, 313, 532
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	505
TseFI	GTSAC	4 cut(s)	343, 518, 541, 673
TseI	GCWGC	3 cut(s)	551, 563, 725
Tsp45I	GTSAC	4 cut(s)	343, 518, 541, 673
TspDTI	ATGAA	5 cut(s)	107, 261, 670, 729, 742
XapI	RAATTY	2 cut(s)	248, 313
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.