FvH4_5g03160

1-aminocyclopropane-1-carboxylate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1888751 .. 1891585
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03160.t1

Sequence Viewer

Length: 1464 bp
ATGGGATTCACTTTGAGCAACCAACAGCAACTGTTGTCTAAGATAGCAACCGGCACCGGAGACAGCGAAAACACTCCATATTTTGATGGCTGGAAGGCCTTTGATAGTGATCCTTACCATCCCACCACCAACCCTCAAGGGGTTATTCAGATGGGTCTTGCAGAAAATCAACTTTCTTTTGATCTGATCCAAGAATGGGTTCTGAAAAACCCAGAAGCCTCCATTTGCACAGCACAAGGAGCAAAAGAATTCAAGGACACAGCCATCTTTCAAGACTATCATGGCTTGCCAGAGTTCAGAAATGCTGTTGCAAATTTCATGGGAAAAGTGAGAGGAAATCGAGTCACATTCAACCCTGACCGCATTGTTATGAGCGGAGGCGCAACCGGAGCTAATGAGATGATTGCCTTTTGCTTGGCTGATCCCGGAGAGGCATTTATGGTGCCAGTTCCTTATTATCCAGCATTCGATAGAGATTTGAGATGGCGAACTGGGGTACAGCTTCTTCCAGTGGCTTGCGAAAGCTCAAACAATTTCAAGATCACGAGAGCAGCCTTGGAAGATGCCTATGAGAAAGCTCAAAAGGCCAACATCAGAGTTAAAGGCTTGCTCATTACCAACCCCTCAAACCCACTAGGCACAATCCTAGACAGAGAGACTCTTAAGAGCTTAGTGACTTTCATCAATGAGAAGAACATCCACCTAGTCTGTGATGAGATCTATGCTGCCACTGTGTTCACTCAGCCTAGGTTCATCAGCATTGCTGAAATACTCGAGGAAGAAGATGTCGTATGCAACCGCGACCTGGTTCACATTGTCTACAGTCTTTCCAAAGACATGGGGTTCCCTGGCTTTAGGGTAGGAATAGTGTACTCATACAATGATGCAGTAGTGAACTGCGCGCGAAAGATGTCGAGTTTCGGGTTGGTTTCTACGCAAACTCAGCGTCTAATTGCATCCATGCTATCAGACAATGAGTTTGTGGATAGATTCATTGTAGAAAGTGCTAAGAGGTTGGAAGCAAGGCACACAAGACTCACTGAGGGACTTGAGGAACAAGGTACTACTTGTTTGAAGAGCAATGGTGGCTTGTTTGTGTGGATGGACTTGCACAAACATCTAAAGGAGCAGACTTTTGAAGCAGAAATGGCATTGTGGAGAACCATAATCTATGAAGTTAAGCTCAATGTGTCACCCGGTGTTTCTTTTCATTGCCCCCAACCAGGTTGGTTCAGGGTTTGCTTTGCCAACATGGATGACCAGACCATGGACGTTGCTTTGGAAAGAATCAGAAACTTTGTGCTTCAAGACAAGGAGGCAGCTGTGGTCGCAATGAAGAAGAAGAAGAACTGCTGGCAAAGTAAGAAGCTGAGTCTCAGCTTCAATAATTATCGAAGATTCGATGAGGTCAACATGTCACCGCATTCCCCTATTCCTCAGTCACCTCTTGTTCGAGCCACTTAG

Protein Analysis

488

Amino Acids

54.94

Weight (kDa)

6.06

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 49 - 430 3e-110 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012840)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 442
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 819
AccII CGCG 3 cut(s) 801, 902, 904
AciI CCGC 4 cut(s) 361, 375, 799, 1421
AclWI GGATC 3 cut(s) 104, 181, 416
AcsI RAATTY 2 cut(s) 248, 313
AdeI CACNNNGTG 1 cut(s) 1199
AfaI GTAC 3 cut(s) 498, 872, 1063
AfiI CCNNNNNNNGG 5 cut(s) 139, 196, 805, 1223, 1267
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 1413
AgsI TTSAA 8 cut(s) 253, 272, 352, 538, 1075, 1139, 1307, 1384
AjnI CCWGG 3 cut(s) 804, 847, 1222
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 9 cut(s) 392, 502, 525, 578, 669, 1183, 1322, 1369, 1380
AluI AGCT 9 cut(s) 392, 502, 525, 578, 669, 1183, 1322, 1369, 1380
Alw26I GTCTC 3 cut(s) 54, 650, 1379
AlwI GGATC 3 cut(s) 104, 181, 416
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 2 cut(s) 96, 585
ApeKI GCWGC 3 cut(s) 551, 725, 1319
ApoI RAATTY 2 cut(s) 248, 313
ArsI GACNNNNNNTTYG 4 cut(s) 931, 962, 963, 994
Asp700I GAANNNNTTC 1 cut(s) 198
AspA2I CCTAGG 1 cut(s) 746
AspLEI GCGC 3 cut(s) 383, 902, 904
AsuC2I CCSGG 2 cut(s) 426, 1197
AsuHPI GGTGA 3 cut(s) 1185, 1410, 1434
AvaI CYCGRG 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 746
BanI GGYRCC 2 cut(s) 53, 442
BarI GAAGNNNNNNTAC 2 cut(s) 489, 521
BauI CACGAG 1 cut(s) 544
BbvI GCAGC 3 cut(s) 563, 712, 1331
BccI CCATC 6 cut(s) 80, 126, 145, 272, 477, 1096
BciT130I CCWGG 3 cut(s) 806, 849, 1224
BcnI CCSGG 2 cut(s) 426, 1197
BcoDI GTCTC 3 cut(s) 54, 650, 1379
BfaI CTAG 4 cut(s) 635, 647, 704, 747
BfmI CTRYAG 1 cut(s) 820
BfrI CTTAAG 1 cut(s) 662
BglII AGATCT 1 cut(s) 717
BisI GCNGC 3 cut(s) 552, 726, 1320
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 3 cut(s) 553, 727, 1321
Bme1390I CCNGG 5 cut(s) 426, 806, 849, 1197, 1224
BmeT110I CYCGRG 1 cut(s) 773
BmiI GGNNCC 3 cut(s) 55, 444, 845
BmrFI CCNGG 5 cut(s) 426, 806, 849, 1197, 1224
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 3 cut(s) 553, 874, 965
BmuI ACTGGG 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 120, 1070
BpuMI CCSGG 2 cut(s) 426, 1197
BsaBI GATNNNNATC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 555, 746, 847, 1266
BsaWI WCCGGW 2 cut(s) 56, 386
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 196, 805, 1223, 1267
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 446, 496, 509
Bse3DI GCAATG 4 cut(s) 759, 1087, 1210, 1338
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 3 cut(s) 806, 849, 1224
BseDI CCNNGG 4 cut(s) 555, 746, 847, 1266
BseGI GGATG 5 cut(s) 118, 696, 956, 1107, 1261
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 5 cut(s) 139, 196, 805, 1223, 1267
BseMI GCAATG 4 cut(s) 759, 1087, 1210, 1338
BseMII CTCAG 6 cut(s) 755, 956, 1032, 1361, 1390, 1451
BseNI ACTGG 3 cut(s) 446, 496, 509
BsePI GCGCGC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 563, 712, 1331
Bsh1236I CGCG 3 cut(s) 801, 902, 904
BshFI GGCC 2 cut(s) 98, 587
BshNI GGYRCC 2 cut(s) 53, 442
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 5 cut(s) 51, 57, 387, 426, 1197
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 5 cut(s) 139, 196, 805, 1223, 1267
BsmAI GTCTC 3 cut(s) 54, 650, 1379
BsmFI GGGAC 1 cut(s) 1059
BsmI GAATGC 2 cut(s) 464, 1423
BsnI GGCC 2 cut(s) 98, 587
BsoBI CYCGRG 1 cut(s) 773
Bsp143I GATC 6 cut(s) 109, 181, 186, 421, 540, 717
Bsp19I CCATGG 1 cut(s) 1266
BspACI CCGC 4 cut(s) 361, 375, 799, 1421
BspANI GGCC 2 cut(s) 98, 587
BspCNI CTCAG 6 cut(s) 754, 955, 1033, 1362, 1389, 1450
BspFNI CGCG 3 cut(s) 801, 902, 904
BspLI GGNNCC 3 cut(s) 55, 444, 845
BspPI GGATC 3 cut(s) 104, 181, 416
BspQI GCTCTTC 1 cut(s) 1070
BspT107I GGYRCC 2 cut(s) 53, 442
BspTI CTTAAG 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 4 cut(s) 759, 1087, 1210, 1338
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 3 cut(s) 446, 496, 509
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 555, 746, 847, 1266
BssHII GCGCGC 1 cut(s) 900
BssMI GATC 6 cut(s) 109, 181, 186, 421, 540, 717
BssSI CACGAG 1 cut(s) 544
BssT1I CCWWGG 3 cut(s) 555, 746, 1266
Bst2BI CACGAG 1 cut(s) 544
Bst2UI CCWGG 3 cut(s) 806, 849, 1224
Bst4CI ACNGT 3 cut(s) 33, 733, 824
Bst6I CTCTTC 1 cut(s) 1070
BstAFI CTTAAG 1 cut(s) 662
BstC8I GCNNGC 5 cut(s) 287, 517, 608, 902, 1355
BstDSI CCRYGG 1 cut(s) 1266
BstF5I GGATG 5 cut(s) 118, 696, 956, 1107, 1261
BstFNI CGCG 3 cut(s) 801, 902, 904
BstHHI GCGC 3 cut(s) 383, 902, 904
BstKTI GATC 6 cut(s) 112, 184, 189, 424, 543, 720
BstMAI GTCTC 3 cut(s) 54, 650, 1379
BstMBI GATC 6 cut(s) 109, 181, 186, 421, 540, 717
BstMWI GCNNNNNNNGC 7 cut(s) 239, 389, 584, 943, 1086, 1148, 1328
BstNI CCWGG 3 cut(s) 806, 849, 1224
BstNSI RCATGY 1 cut(s) 1417
BstSCI CCNGG 5 cut(s) 424, 804, 847, 1195, 1222
BstSFI CTRYAG 1 cut(s) 820
BstUI CGCG 3 cut(s) 801, 902, 904
BstV1I GCAGC 3 cut(s) 563, 712, 1331
BstX2I RGATCY 1 cut(s) 717
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 2 cut(s) 98, 587
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 5 cut(s) 118, 696, 956, 1107, 1261
BtsIMutI CAGTG 3 cut(s) 516, 729, 1038
Cac8I GCNNGC 5 cut(s) 287, 517, 608, 902, 1355
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 3 cut(s) 383, 902, 904
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 1 cut(s) 935
CsiI ACCWGGT 2 cut(s) 804, 1222
Csp6I GTAC 3 cut(s) 497, 871, 1062
CviAII CATG 7 cut(s) 281, 319, 838, 961, 1252, 1267, 1414
CviQI GTAC 3 cut(s) 497, 871, 1062
DpnI GATC 6 cut(s) 111, 183, 188, 423, 542, 719
DpnII GATC 6 cut(s) 109, 181, 186, 421, 540, 717
DraIII CACNNNGTG 1 cut(s) 1199
Eam1104I CTCTTC 1 cut(s) 1070
EarI CTCTTC 1 cut(s) 1070
Eco130I CCWWGG 3 cut(s) 555, 746, 1266
Eco147I AGGCCT 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 3 cut(s) 804, 847, 1222
EcoT14I CCWWGG 3 cut(s) 555, 746, 1266
ErhI CCWWGG 3 cut(s) 555, 746, 1266
FaeI CATG 7 cut(s) 284, 322, 841, 964, 1255, 1270, 1417
FaqI GGGAC 1 cut(s) 1059
FatI CATG 7 cut(s) 280, 318, 837, 960, 1251, 1266, 1413
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 3 cut(s) 552, 726, 1320
FokI GGATG 5 cut(s) 105, 683, 943, 1114, 1268
Fsp4HI GCNGC 3 cut(s) 552, 726, 1320
FspBI CTAG 4 cut(s) 635, 647, 704, 747
GlaI GCGC 3 cut(s) 382, 901, 903
GluI GCNGC 3 cut(s) 552, 726, 1320
HaeIII GGCC 2 cut(s) 98, 587
HapII CCGG 5 cut(s) 51, 57, 387, 426, 1197
HgaI GACGC 1 cut(s) 935
HhaI GCGC 3 cut(s) 383, 902, 904
Hin1II CATG 7 cut(s) 284, 322, 841, 964, 1255, 1270, 1417
Hin6I GCGC 3 cut(s) 381, 900, 902
HinP1I GCGC 3 cut(s) 381, 900, 902
HincII GTYRAC 1 cut(s) 1411
HindII GTYRAC 1 cut(s) 1411
HinfI GANTC 8 cut(s) 6, 342, 658, 990, 1035, 1287, 1372, 1398
HpaII CCGG 5 cut(s) 51, 57, 387, 426, 1197
HphI GGTGA 3 cut(s) 1185, 1410, 1434
Hpy166II GTNNAC 6 cut(s) 738, 811, 820, 871, 895, 1411
Hpy188I TCNGA 7 cut(s) 150, 186, 204, 299, 596, 970, 1292
Hpy188III TCNNGA 4 cut(s) 272, 538, 544, 1307
Hpy8I GTNNAC 6 cut(s) 738, 811, 820, 871, 895, 1411
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 3 cut(s) 33, 733, 824
HpyCH4IV ACGT 1 cut(s) 1272
HpyCH4V TGCA 7 cut(s) 161, 228, 311, 795, 887, 956, 1111
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 389, 584, 943, 1086, 1148, 1328
HpySE526I ACGT 1 cut(s) 1272
Hsp92II CATG 7 cut(s) 284, 322, 841, 964, 1255, 1270, 1417
HspAI GCGC 3 cut(s) 381, 900, 902
Kzo9I GATC 6 cut(s) 109, 181, 186, 421, 540, 717
LguI GCTCTTC 1 cut(s) 1070
LmnI GCTCC 3 cut(s) 239, 389, 1126
Lsp1109I GCAGC 3 cut(s) 563, 712, 1331
LweI GCATC 3 cut(s) 553, 874, 965
MabI ACCWGGT 2 cut(s) 804, 1222
MaeI CTAG 4 cut(s) 635, 647, 704, 747
MaeII ACGT 1 cut(s) 1272
MaeIII GTNAC 5 cut(s) 343, 673, 1191, 1416, 1440
MalI GATC 6 cut(s) 111, 183, 188, 423, 542, 719
MbiI CCGCTC 1 cut(s) 375
MboI GATC 6 cut(s) 109, 181, 186, 421, 540, 717
MflI RGATCY 1 cut(s) 717
MluCI AATT 5 cut(s) 248, 313, 532, 951, 1387
MlyI GAGTC 4 cut(s) 351, 652, 1029, 1381
MmeI TCCRAC 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 600, 663, 1179
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 1322
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 5 cut(s) 51, 57, 387, 426, 1197
MspR9I CCNGG 5 cut(s) 426, 806, 849, 1197, 1224
Mva1269I GAATGC 2 cut(s) 464, 1423
MvaI CCWGG 3 cut(s) 806, 849, 1224
MvnI CGCG 3 cut(s) 801, 902, 904
MwoI GCNNNNNNNGC 7 cut(s) 239, 389, 584, 943, 1086, 1148, 1328
NciI CCSGG 2 cut(s) 426, 1197
NcoI CCATGG 1 cut(s) 1266
NdeII GATC 6 cut(s) 109, 181, 186, 421, 540, 717
NlaIII CATG 7 cut(s) 284, 322, 841, 964, 1255, 1270, 1417
NlaIV GGNNCC 3 cut(s) 55, 444, 845
NmuCI GTSAC 5 cut(s) 343, 673, 1191, 1416, 1440
NspI RCATGY 1 cut(s) 1417
PaeR7I CTCGAG 1 cut(s) 773
PauI GCGCGC 1 cut(s) 900
PceI AGGCCT 1 cut(s) 98
PciI ACATGT 1 cut(s) 1413
PciSI GCTCTTC 1 cut(s) 1070
PctI GAATGC 2 cut(s) 464, 1423
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 4 cut(s) 6, 990, 1287, 1398
PflMI CCANNNNNTGG 1 cut(s) 1267
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 3 cut(s) 553, 727, 1321
PleI GAGTC 4 cut(s) 350, 652, 1029, 1380
PpsI GAGTC 4 cut(s) 350, 652, 1029, 1380
PscI ACATGT 1 cut(s) 1413
Psp6I CCWGG 3 cut(s) 804, 847, 1222
PspGI CCWGG 3 cut(s) 804, 847, 1222
PspN4I GGNNCC 3 cut(s) 55, 444, 845
PspXI VCTCGAGB 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 717
PteI GCGCGC 1 cut(s) 900
PvuII CAGCTG 1 cut(s) 1322
RsaI GTAC 3 cut(s) 498, 872, 1063
RsaNI GTAC 3 cut(s) 497, 871, 1062
RseI CAYNNNNRTG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 1070
SaqAI TTAA 3 cut(s) 600, 663, 1179
SatI GCNGC 3 cut(s) 552, 726, 1320
Sau3AI GATC 6 cut(s) 109, 181, 186, 421, 540, 717
SchI GAGTC 4 cut(s) 351, 652, 1029, 1381
ScrFI CCNGG 5 cut(s) 426, 806, 849, 1197, 1224
SexAI ACCWGGT 2 cut(s) 804, 1222
SfaNI GCATC 3 cut(s) 553, 874, 965
SfcI CTRYAG 1 cut(s) 820
Sfr274I CTCGAG 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 4 cut(s) 135, 662, 773, 1049
SmoI CTYRAG 4 cut(s) 135, 662, 773, 1049
Sse9I AATT 5 cut(s) 248, 313, 532, 951, 1387
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 4 cut(s) 361, 375, 799, 1421
SspMI CTAG 4 cut(s) 635, 647, 704, 747
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 5 cut(s) 424, 804, 847, 1195, 1222
StyI CCWWGG 3 cut(s) 555, 746, 1266
TaaI ACNGT 3 cut(s) 33, 733, 824
TaiI ACGT 1 cut(s) 1275
TaqI TCGA 7 cut(s) 340, 468, 774, 914, 1393, 1401, 1453
TasI AATT 5 cut(s) 248, 313, 532, 951, 1387
TatI WGTACW 1 cut(s) 870
TfiI GAWTC 4 cut(s) 6, 990, 1287, 1398
Tru1I TTAA 3 cut(s) 600, 663, 1179
Tru9I TTAA 3 cut(s) 600, 663, 1179
TscAI CASTG 3 cut(s) 516, 736, 1045
TseFI GTSAC 5 cut(s) 343, 673, 1191, 1416, 1440
TseI GCWGC 3 cut(s) 551, 725, 1319
Tsp45I GTSAC 5 cut(s) 343, 673, 1191, 1416, 1440
TspDTI ATGAA 7 cut(s) 307, 670, 742, 982, 1188, 1199, 1349
TspRI CASTG 3 cut(s) 516, 736, 1045
Van91I CCANNNNNTGG 1 cut(s) 1267
Vha464I CTTAAG 1 cut(s) 662
XapI RAATTY 2 cut(s) 248, 313
XceI RCATGY 1 cut(s) 1417
XhoI CTCGAG 1 cut(s) 773
XmaJI CCTAGG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 4 cut(s) 635, 647, 704, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.