Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009962

Physical Location & Seq

Genomic Coordinates Forward (+)

7090313 .. 7093492

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAGAGGAGTAAAACGCGCCGCCATCTCCGAATCGAATGACTCTCCCTTTAAGAATGCAAAACCAGTGGAAGGAATCTTTTTTGGTACTCAGAAGAATGTGGTACCGATGCAGCAGAGTTCAGTAACATCAGCATCATTGGATAAACAGAGGGCTGAGTTAGCTAGGAAGCATGTGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTGATGAACTTTGGGAAGATGGGATGAATGACTACATTACGCATGCTTCAAACATTCTGGAAAAGTTTAAGGATGTGGTCAGCTGGCTTAAAGAAAATAAGGGAAAGGGGGAGAATTTATCCCCTGAATCTCGTGGAGCAGAAAATAAATTAGTGGCTGAAGTCAAGAATACCAATGTTAAATCATTTTCAAACAATATTCCTTTTGCTTCAAACAATCAACCTGGGATCTTCTCAAACAATCAATCTTCCGATTTTTCCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAATCTGGAGCATTCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGATCTTTTAGCAGTGGCCAGTTTGGTACGACAAAAAGCAGCCAACCAAGCCTATTTTCCGGCAGTCAAGCCGGAGCAATCTCTAATAGCCAACCTGGAACTTTCTCCAGCAGTCACTCTGGTATAACATCTAATAGCCAGACGGGATCTTTTAGTAGTGGCCAATTTGGTCAGACAAAAAGCAGCCAACCAAGCCTACTTTCCGGCAGTCAAGCAGGAGCAATCTCTAGTAACCAACCTTCTTTTCAATTTTCTAACAGTCAATCCCCTTTTACATCTGCAGTACCTCCAGTGTCCATACCGGCAAAGCAGGATCACTCAGATGATGCGGATGGTGGAGACGAACAATCTCAACCGAGCAGCCCATCTGTCAAAAAGACGGAAGAAAAGGGTATTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAGTGACCCAGCAGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAAGGAGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGAAAACTGCTTCTGAATGCACTACTGTACGCTGGAATGAAGACAAGCCCACAGAAGAACGCTCTTGTTGCAATATTTCACTCCTCGGATGATTCCAACGAGAATGTAACACCGAGAACCTTTCTGATAAGGACAAAGAACGCAGAAGCTAGAGATAATTTAGCAACGGCCATCCAAGAATACGCCCCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001838 GO:0001841 GO:0002009 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008536 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016331 GO:0017016 GO:0017038 GO:0019899 GO:0021915 GO:0031090 GO:0031267 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0035148 GO:0035239 GO:0035295 GO:0042886 GO:0043009 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048598 GO:0048646 GO:0048729 GO:0048731 GO:0048856 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060429 GO:0060562 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072175 GO:0072594 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

443

Amino Acids

47.42

Weight (kDa)

9.03

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ran_BP1	PF00638	315 - 438	2.1e-10	RanBP1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11790
fragaria_vesca	FvH4_5g01420 FvH4_5g01420 FvH4_5g01420 FvH4_5g01420
malus_domestica	MD04G1068600.v1.1 MD06G1071900.v1.1
prunus_persica	Prupe.5G089600_v2.0.a1 Prupe.5G089600_v2.0.a1
pyrus_communis	pycom04g06190 pycom06g07100
rosa_chinensis	RchiOBHm_Chr7g0199441
rosa_laevigata	RLG00000003792
rosa_multiflora	Rmu_sc0003890.1_g000007
rosa_roxburghii	Rroxscaffold_3G00256720
rosa_rugosa	Rorug07G0054000
rosa_samantha	Rh7AG179100 Rh7BG182500 Rh7CG187700 Rh7DG182000
rosa_wichuraiana	Rw7G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	1083
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	21, 902
AclWI	GGATC	4 cut(s)	467, 583, 727, 894
AcoI	YGGCCR	3 cut(s)	589, 733, 1302
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	242, 411
AfaI	GTAC	5 cut(s)	88, 105, 601, 858, 1163
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	282, 423, 444, 516, 821
AjnI	CCWGG	2 cut(s)	454, 667
AjuI	GAANNNNNNNTTGG	6 cut(s)	613, 645, 757, 789, 801, 833
AluBI	AGCT	5 cut(s)	164, 182, 220, 315, 1283
AluI	AGCT	5 cut(s)	164, 182, 220, 315, 1283
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	4 cut(s)	467, 583, 727, 894
AoxI	GGCC	3 cut(s)	589, 733, 1302
ApeKI	GCWGC	4 cut(s)	112, 612, 756, 933
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	4 cut(s)	987, 1019, 1065, 1097
Asp718I	GGTACC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	20
BalI	TGGCCA	2 cut(s)	591, 735
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	796, 828
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	1181
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	124, 624, 768, 945
BccI	CCATC	5 cut(s)	32, 245, 899, 946, 1313
BceAI	ACGGC	1 cut(s)	1317
BciT130I	CCWGG	2 cut(s)	456, 669
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	3 cut(s)	165, 801, 1284
BfmI	CTRYAG	1 cut(s)	852
BisI	GCNGC	5 cut(s)	21, 113, 613, 757, 934
BlsI	GCNGC	5 cut(s)	22, 114, 614, 758, 935
Bme1390I	CCNGG	2 cut(s)	456, 669
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	456, 669
BmrI	ACTGGG	1 cut(s)	1059
BmsI	GCATC	3 cut(s)	99, 143, 889
BmuI	ACTGGG	1 cut(s)	1059
BpiI	GAAGAC	1 cut(s)	1181
BpmI	CTGGAG	4 cut(s)	520, 546, 664, 846
BsaJI	CCNNGG	2 cut(s)	455, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	874
Bse1I	ACTGG	6 cut(s)	65, 492, 577, 592, 863, 1054
BseBI	CCWGG	2 cut(s)	456, 669
BseDI	CCNNGG	2 cut(s)	455, 1218
BseGI	GGATG	6 cut(s)	229, 261, 310, 910, 1228, 1305
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	3 cut(s)	104, 147, 906
BseNI	ACTGG	6 cut(s)	65, 492, 577, 592, 863, 1054
BseRI	GAGGAG	2 cut(s)	21, 1207
BseXI	GCAGC	4 cut(s)	124, 624, 768, 945
BseYI	CCCAGC	1 cut(s)	1018
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	591, 735, 1304
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	633, 645, 777, 875
BslFI	GGGAC	1 cut(s)	1105
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	906
BsmBI	CGTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	1105
BsmI	GAATGC	3 cut(s)	61, 530, 1156
BsnI	GGCC	3 cut(s)	591, 735, 1304
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	459, 575, 719, 886
BspACI	CCGC	2 cut(s)	21, 902
BspANI	GGCC	3 cut(s)	591, 735, 1304
BspCNI	CTCAG	3 cut(s)	103, 148, 905
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	4 cut(s)	467, 583, 727, 894
BspT107I	GGYRCC	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	874
BsrI	ACTGG	6 cut(s)	65, 492, 577, 592, 863, 1054
BssAI	RCCGGY	1 cut(s)	874
BssECI	CCNNGG	2 cut(s)	455, 1218
BssMI	GATC	4 cut(s)	459, 575, 719, 886
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	456, 669
Bst4CI	ACNGT	3 cut(s)	833, 973, 1161
BstC8I	GCNNGC	2 cut(s)	276, 317
BstDEI	CTNAG	3 cut(s)	90, 156, 892
BstF5I	GGATG	6 cut(s)	229, 261, 310, 910, 1228, 1305
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	462, 578, 722, 889
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	4 cut(s)	459, 575, 719, 886
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 217, 621, 765, 1202
BstNI	CCWGG	2 cut(s)	456, 669
BstNSI	RCATGY	2 cut(s)	176, 278
BstSCI	CCNGG	2 cut(s)	454, 667
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	4 cut(s)	124, 624, 768, 945
BstV2I	GAAGAC	1 cut(s)	1181
BstX2I	RGATCY	3 cut(s)	459, 575, 719
BstYI	RGATCY	3 cut(s)	459, 575, 719
BsuRI	GGCC	3 cut(s)	591, 735, 1304
BtsCI	GGATG	6 cut(s)	229, 261, 310, 910, 1228, 1305
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	72, 592, 870
Cac8I	GCNNGC	2 cut(s)	276, 317
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	874
Csp6I	GTAC	5 cut(s)	87, 104, 600, 857, 1162
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 1099, 1134
CviAII	CATG	3 cut(s)	173, 275, 980
CviQI	GTAC	5 cut(s)	87, 104, 600, 857, 1162
DdeI	CTNAG	3 cut(s)	90, 156, 892
DpnI	GATC	4 cut(s)	461, 577, 721, 888
DpnII	GATC	4 cut(s)	459, 575, 719, 886
EaeI	YGGCCR	3 cut(s)	589, 733, 1302
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	242, 411
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	454, 667
EcoRV	GATATC	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	906
FaeI	CATG	3 cut(s)	176, 278, 983
FaiI	YATR	8 cut(s)	174, 276, 698, 872, 981, 1002, 1064, 1330
FaqI	GGGAC	1 cut(s)	1105
FatI	CATG	3 cut(s)	172, 274, 979
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	5 cut(s)	21, 113, 613, 757, 934
FokI	GGATG	6 cut(s)	216, 268, 317, 917, 1235, 1292
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	5 cut(s)	21, 113, 613, 757, 934
FspBI	CTAG	3 cut(s)	165, 801, 1284
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	5 cut(s)	21, 113, 613, 757, 934
GsaI	CCCAGC	1 cut(s)	1022
GsuI	CTGGAG	4 cut(s)	520, 546, 664, 846
HaeIII	GGCC	3 cut(s)	591, 735, 1304
HapII	CCGG	4 cut(s)	633, 645, 777, 875
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	176, 278, 983
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	9 cut(s)	32, 41, 75, 226, 359, 1054, 1080, 1100, 1226
HpaII	CCGG	4 cut(s)	633, 645, 777, 875
Hpy166II	GTNNAC	1 cut(s)	1084
Hpy188I	TCNGA	9 cut(s)	31, 93, 484, 747, 895, 1124, 1149, 1222, 1260
Hpy188III	TCNNGA	5 cut(s)	233, 290, 397, 525, 980
Hpy8I	GTNNAC	1 cut(s)	1084
HpyAV	CCTTC	5 cut(s)	65, 555, 822, 1070, 1332
HpyCH4III	ACNGT	3 cut(s)	833, 973, 1161
HpyCH4V	TGCA	8 cut(s)	59, 112, 211, 854, 993, 1071, 1154, 1205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 217, 621, 765, 1202
HpyF3I	CTNAG	3 cut(s)	90, 156, 892
Hsp92II	CATG	3 cut(s)	176, 278, 983
HspAI	GCGC	1 cut(s)	18
KpnI	GGTACC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	459, 575, 719, 886
LmnI	GCTCC	4 cut(s)	368, 527, 647, 791
Lsp1109I	GCAGC	4 cut(s)	124, 624, 768, 945
LweI	GCATC	3 cut(s)	99, 143, 889
MaeI	CTAG	3 cut(s)	165, 801, 1284
MaeIII	GTNAC	6 cut(s)	124, 213, 686, 803, 1013, 1240
MalI	GATC	4 cut(s)	461, 577, 721, 888
MboI	GATC	4 cut(s)	459, 575, 719, 886
MboII	GAAGA	9 cut(s)	106, 235, 260, 454, 471, 968, 1186, 1201, 1317
MflI	RGATCY	3 cut(s)	459, 575, 719
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	2 cut(s)	591, 735
MluCI	AATT	7 cut(s)	194, 346, 380, 737, 821, 1113, 1291
MluNI	TGGCCA	2 cut(s)	591, 735
MlyI	GAGTC	2 cut(s)	35, 1089
MmeI	TCCRAC	2 cut(s)	1114, 1254
MnlI	CCTC	3 cut(s)	144, 870, 1228
Mox20I	TGGCCA	2 cut(s)	591, 735
MscI	TGGCCA	2 cut(s)	591, 735
MseI	TTAA	5 cut(s)	51, 186, 300, 321, 411
MslI	CAYNNNNRTG	2 cut(s)	234, 894
Msp20I	TGGCCA	2 cut(s)	591, 735
MspA1I	CMGCKG	2 cut(s)	220, 315
MspI	CCGG	4 cut(s)	633, 645, 777, 875
MspR9I	CCNGG	2 cut(s)	456, 669
Mva1269I	GAATGC	3 cut(s)	61, 530, 1156
MvaI	CCWGG	2 cut(s)	456, 669
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	5 cut(s)	161, 217, 621, 765, 1202
NdeII	GATC	4 cut(s)	459, 575, 719, 886
NlaIII	CATG	3 cut(s)	176, 278, 983
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	686, 1013
NspI	RCATGY	2 cut(s)	176, 278
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	979
PctI	GAATGC	3 cut(s)	61, 530, 1156
PfeI	GAWTC	7 cut(s)	32, 75, 226, 359, 1054, 1100, 1226
PkrI	GCNGC	5 cut(s)	22, 114, 614, 758, 935
PleI	GAGTC	2 cut(s)	35, 1088
PpsI	GAGTC	2 cut(s)	35, 1088
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	454, 667
PspFI	CCCAGC	1 cut(s)	1018
PspGI	CCWGG	2 cut(s)	454, 667
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	3 cut(s)	459, 575, 719
PvuII	CAGCTG	2 cut(s)	220, 315
RsaI	GTAC	5 cut(s)	88, 105, 601, 858, 1163
RsaNI	GTAC	5 cut(s)	87, 104, 600, 857, 1162
RseI	CAYNNNNRTG	2 cut(s)	234, 894
SacI	GAGCTC	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	1082
SaqAI	TTAA	5 cut(s)	51, 186, 300, 321, 411
SatI	GCNGC	5 cut(s)	21, 113, 613, 757, 934
Sau3AI	GATC	4 cut(s)	459, 575, 719, 886
SchI	GAGTC	2 cut(s)	35, 1089
ScrFI	CCNGG	2 cut(s)	456, 669
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	3 cut(s)	99, 143, 889
SfcI	CTRYAG	1 cut(s)	852
SmiMI	CAYNNNNRTG	2 cut(s)	234, 894
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	7 cut(s)	194, 346, 380, 737, 821, 1113, 1291
SsiI	CCGC	2 cut(s)	21, 902
SspI	AATATT	2 cut(s)	430, 1209
SspMI	CTAG	3 cut(s)	165, 801, 1284
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	454, 667
TaaI	ACNGT	3 cut(s)	833, 973, 1161
TaqI	TCGA	2 cut(s)	35, 1083
TasI	AATT	7 cut(s)	194, 346, 380, 737, 821, 1113, 1291
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	7 cut(s)	32, 75, 226, 359, 1054, 1100, 1226
Tru1I	TTAA	5 cut(s)	51, 186, 300, 321, 411
Tru9I	TTAA	5 cut(s)	51, 186, 300, 321, 411
TscAI	CASTG	3 cut(s)	72, 592, 870
TseFI	GTSAC	2 cut(s)	686, 1013
TseI	GCWGC	4 cut(s)	112, 612, 756, 933
Tsp45I	GTSAC	2 cut(s)	686, 1013
TspDTI	ATGAA	6 cut(s)	252, 272, 968, 996, 1187, 1317
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	3 cut(s)	72, 592, 870
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	176, 278
XmiI	GTMKAC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	165, 801, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.