RLG00000003792

Ran-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
52783238 .. 52789413
6176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003792

Sequence Viewer

Length: 1413 bp
ATGATGGGAGGAGCCAAACGTTTCGGCTTATCGGATACCAATTCCGACTCCGCTGCCTTTCGGAACAAAAGAATAATGACAGGATCCTCATTTGATGTTCATAGAGCAGAATCTTCTCAAGAGCAGATTACGGCTACACCTTCATTAGATGAACGGCGAGCCGAGTCATCACGGCTGCATGTGAGAGCTCTCAACACCCAATTTGCAAGTTGGGTACAGACACAACTAAAAAATCATCCTGATGAAATTTGGGAAGACGGTATTCGAGATTACCTGGCCCATGCTTCAAACATCATGGAAAAATTCAGTGATGTTGTGAACTGGCTTAAAGTAAATGCTGCAAAAGGAGAAACTTGGGCTGCTGCAGGATCTCAGACTTCTACTGAGAAGAAAAAGGTGTCGGAGTCCACAAAGAATGAGACGAACAAATTTCAGGCGACAACCCCTTTATCATCAGTTGGTGCAACCACAAACTTTACAGCTCCATGGAGTACTGGAGTGTTCTCGAACAGCCAGAGCTCTACAGGAGTATTCTCCAACAACCAGAGCTCCACAGGAGTGTTCTCTACCAGCAAAAGTTCTACAGGAGTATCTTCCAATGGCCAAAGCTATTCAGGATTATATAACAGCCAAAGCTCTCCAGTCTTCTCCGCTAATCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCGGGCATGTTCTCCAATAGCCAAAGCTCCAGCATGTTTTCCAATAGCCAAAGCTCTGGCATGTTTTCCAATAGCCAAAGCCCCGGGCAATTCTCAAATAGTCAAAGCTCTAAAGTTTCTTCCGATAGTCAAAGCCCTGGGTTATTTTCCAATAGTCAAAGTTCGGCATTATTTTCCAATAGTCAAAGCCCGGGATTATTTTCCAACAATCAAAGTTTTGGGGGATTCTCCAACACTCCCAGTTTTGGGTTATTCTCCAACAGTCAAAGTTCTGGGGCATTGTCCAACAGTCAAACCCCTCCCTTGTTTGGAAGTCAGAGTTCAGTTCCTCAAAACCGTGATGCTTCTGATGAAGCAGATGCTGATATTGATGTGGAGGAACCTAGCAGCCCATCTGTGAAAAAGTCTGAAGAAAAGGGTGTTGTTGTAGTCCACGAAGTCAAGTGCAAACTTTATGTGAAGTCAAGTGATCCAGCGGATAGTTGGAAAGATAAAGGGACAGGACAGCTAACGATAAGGTGCAAAGAGGGTGTCAGCAAGGGTACAAAAGAATCAAAACCAACAGTCATTGTTCGGAATGATGTGGGAAAGCTGCTGCTTAACGCGTTGTTATATTCAGGCATCAAGACTAATCCGCAGAAGAATTCCCTTGTTGCAATATTTCATACTGCGGTAATACAATGCTATGATATTTGA

Protein Analysis

471

Amino Acids

50.14

Weight (kDa)

8.27

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1322
AciI CCGC 5 cut(s) 51, 651, 1193, 1352, 1388
AclI AACGTT 1 cut(s) 19
AclWI GGATC 4 cut(s) 78, 91, 376, 1181
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 4 cut(s) 246, 302, 428, 1360
AcuI CTGAAG 1 cut(s) 1146
AfaI GTAC 3 cut(s) 216, 493, 1261
AfiI CCNNNNNNNGG 3 cut(s) 962, 963, 1025
AflIII ACRYGT 1 cut(s) 1320
AgsI TTSAA 1 cut(s) 288
AjnI CCWGG 2 cut(s) 273, 853
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 6 cut(s) 190, 521, 551, 665, 692, 719
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 78, 91, 376, 1181
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 3 cut(s) 718, 800, 907
AoxI GGCC 2 cut(s) 276, 601
ApeKI GCWGC 8 cut(s) 53, 175, 338, 359, 362, 1104, 1309, 1312
ApoI RAATTY 4 cut(s) 246, 302, 428, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 1233, 1265
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 4 cut(s) 801, 802, 908, 909
AvaI CYCGRG 3 cut(s) 718, 800, 907
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BalI TGGCCA 1 cut(s) 603
BamHI GGATCC 1 cut(s) 83
BanII GRGCYC 6 cut(s) 190, 521, 551, 665, 692, 719
BbsI GAAGAC 2 cut(s) 261, 637
Bbv12I GWGCWC 6 cut(s) 190, 521, 551, 665, 692, 719
BbvI GCAGC 8 cut(s) 40, 162, 325, 346, 349, 1116, 1296, 1299
BccI CCATC 1 cut(s) 1117
BceAI ACGGC 3 cut(s) 147, 170, 188
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 2 cut(s) 275, 855
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 4 cut(s) 801, 802, 908, 909
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 3 cut(s) 363, 522, 582
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 8 cut(s) 54, 176, 339, 360, 363, 1105, 1310, 1313
BlsI GCNGC 8 cut(s) 55, 177, 340, 361, 364, 1106, 1311, 1314
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 6 cut(s) 275, 801, 802, 855, 908, 909
BmeT110I CYCGRG 3 cut(s) 718, 800, 907
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 13, 85, 1098
BmrFI CCNGG 6 cut(s) 275, 801, 802, 855, 908, 909
BmrI ACTGGG 1 cut(s) 951
BmsI GCATC 3 cut(s) 1048, 1066, 1347
BmuI ACTGGG 1 cut(s) 951
BpiI GAAGAC 2 cut(s) 261, 637
BpmI CTGGAG 5 cut(s) 516, 624, 649, 676, 730
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 4 cut(s) 801, 802, 908, 909
BsaJI CCNNGG 6 cut(s) 485, 799, 800, 853, 854, 907
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 962, 963, 1025
Bse1I ACTGG 6 cut(s) 326, 499, 641, 678, 705, 957
BseBI CCWGG 2 cut(s) 275, 855
BseDI CCNNGG 6 cut(s) 485, 799, 800, 853, 854, 907
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 962, 963, 1025
BseMII CTCAG 2 cut(s) 375, 386
BseNI ACTGG 6 cut(s) 326, 499, 641, 678, 705, 957
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 8 cut(s) 40, 162, 325, 346, 349, 1116, 1296, 1299
Bsh1236I CGCG 1 cut(s) 1322
BshFI GGCC 2 cut(s) 278, 603
BsiHKAI GWGCWC 6 cut(s) 190, 521, 551, 665, 692, 719
BsiHKCI CYCGRG 3 cut(s) 718, 800, 907
BsiSI CCGG 2 cut(s) 801, 908
BslFI GGGAC 1 cut(s) 1228
BslI CCNNNNNNNGG 3 cut(s) 962, 963, 1025
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 1228
BsnI GGCC 2 cut(s) 278, 603
BsoBI CYCGRG 3 cut(s) 718, 800, 907
Bsp1286I GDGCHC 6 cut(s) 190, 521, 551, 665, 692, 719
Bsp143I GATC 3 cut(s) 83, 368, 1186
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 5 cut(s) 51, 651, 1193, 1352, 1388
BspANI GGCC 2 cut(s) 278, 603
BspCNI CTCAG 2 cut(s) 376, 385
BspFNI CGCG 1 cut(s) 1322
BspLI GGNNCC 3 cut(s) 13, 85, 1098
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 4 cut(s) 78, 91, 376, 1181
BsrI ACTGG 6 cut(s) 326, 499, 641, 678, 705, 957
BssECI CCNNGG 6 cut(s) 485, 799, 800, 853, 854, 907
BssMI GATC 3 cut(s) 83, 368, 1186
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 275, 855
Bst4CI ACNGT 5 cut(s) 260, 980, 1007, 1055, 1282
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 372, 384
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 1322
BstKTI GATC 3 cut(s) 86, 371, 1189
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 83, 368, 1186
BstNI CCWGG 2 cut(s) 275, 855
BstNSI RCATGY 4 cut(s) 182, 727, 754, 781
BstSCI CCNGG 6 cut(s) 273, 799, 800, 853, 906, 907
BstSFI CTRYAG 3 cut(s) 363, 522, 582
BstUI CGCG 1 cut(s) 1322
BstV1I GCAGC 8 cut(s) 40, 162, 325, 346, 349, 1116, 1296, 1299
BstV2I GAAGAC 2 cut(s) 261, 637
BstX2I RGATCY 2 cut(s) 83, 368
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 2 cut(s) 83, 368
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 278, 603
BtgI CCRYGG 1 cut(s) 485
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 1079
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 2 cut(s) 800, 907
Csp6I GTAC 3 cut(s) 215, 492, 1260
CviAII CATG 7 cut(s) 179, 281, 295, 486, 724, 751, 778
CviQI GTAC 3 cut(s) 215, 492, 1260
DdeI CTNAG 2 cut(s) 372, 384
DpnI GATC 3 cut(s) 85, 370, 1188
DpnII GATC 3 cut(s) 83, 368, 1186
EaeI YGGCCR 1 cut(s) 601
Ecl136II GAGCTC 6 cut(s) 188, 519, 549, 663, 690, 717
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 6 cut(s) 190, 521, 551, 665, 692, 719
Eco53kI GAGCTC 6 cut(s) 188, 519, 549, 663, 690, 717
Eco57I CTGAAG 1 cut(s) 1146
Eco88I CYCGRG 3 cut(s) 718, 800, 907
EcoICRI GAGCTC 6 cut(s) 188, 519, 549, 663, 690, 717
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 2 cut(s) 273, 853
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 6 cut(s) 190, 521, 551, 665, 692, 719
ErhI CCWWGG 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 7 cut(s) 182, 284, 298, 489, 727, 754, 781
FaqI GGGAC 1 cut(s) 1228
FatI CATG 7 cut(s) 178, 280, 294, 485, 723, 750, 777
Fnu4HI GCNGC 8 cut(s) 54, 176, 339, 360, 363, 1105, 1310, 1313
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 6 cut(s) 190, 521, 551, 665, 692, 719
Fsp4HI GCNGC 8 cut(s) 54, 176, 339, 360, 363, 1105, 1310, 1313
FspBI CTAG 1 cut(s) 1101
GluI GCNGC 8 cut(s) 54, 176, 339, 360, 363, 1105, 1310, 1313
GsuI CTGGAG 5 cut(s) 516, 624, 649, 676, 730
HaeIII GGCC 2 cut(s) 278, 603
HapII CCGG 2 cut(s) 801, 908
Hin1II CATG 7 cut(s) 182, 284, 298, 489, 727, 754, 781
HinfI GANTC 6 cut(s) 47, 110, 164, 404, 942, 1268
HpaII CCGG 2 cut(s) 801, 908
Hpy166II GTNNAC 3 cut(s) 319, 408, 1150
Hpy188III TCNNGA 6 cut(s) 119, 239, 266, 505, 615, 1342
Hpy8I GTNNAC 3 cut(s) 319, 408, 1150
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 5 cut(s) 260, 980, 1007, 1055, 1282
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 8 cut(s) 178, 206, 341, 365, 464, 1164, 1239, 1373
HpyF3I CTNAG 2 cut(s) 372, 384
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 7 cut(s) 182, 284, 298, 489, 727, 754, 781
Kzo9I GATC 3 cut(s) 83, 368, 1186
LmnI GCTCC 6 cut(s) 11, 487, 554, 668, 695, 749
Lsp1109I GCAGC 8 cut(s) 40, 162, 325, 346, 349, 1116, 1296, 1299
LweI GCATC 3 cut(s) 1048, 1066, 1347
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 1 cut(s) 19
MalI GATC 3 cut(s) 85, 370, 1188
MboI GATC 3 cut(s) 83, 368, 1186
MboII GAAGA 8 cut(s) 105, 266, 400, 585, 637, 828, 1139, 1369
MflI RGATCY 2 cut(s) 83, 368
MhlI GDGCHC 6 cut(s) 190, 521, 551, 665, 692, 719
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 7 cut(s) 40, 200, 246, 302, 428, 806, 1360
MluI ACGCGT 1 cut(s) 1320
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 3 cut(s) 41, 173, 413
MmeI TCCRAC 8 cut(s) 69, 381, 561, 945, 972, 999, 1026, 1181
MnlI CCTC 5 cut(s) 97, 1026, 1056, 1087, 1237
Mox20I TGGCCA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 603
MseI TTAA 2 cut(s) 327, 1317
MslI CAYNNNNRTG 2 cut(s) 240, 557
Msp20I TGGCCA 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 53, 1193
MspI CCGG 2 cut(s) 801, 908
MspR9I CCNGG 6 cut(s) 275, 801, 802, 855, 908, 909
MvaI CCWGG 2 cut(s) 275, 855
MvnI CGCG 1 cut(s) 1322
NciI CCSGG 4 cut(s) 801, 802, 908, 909
NcoI CCATGG 1 cut(s) 485
NdeII GATC 3 cut(s) 83, 368, 1186
NlaIII CATG 7 cut(s) 182, 284, 298, 489, 727, 754, 781
NlaIV GGNNCC 3 cut(s) 13, 85, 1098
NmeAIII GCCGAG 1 cut(s) 187
NspI RCATGY 4 cut(s) 182, 727, 754, 781
OliI CACNNNNGTG 1 cut(s) 557
PasI CCCWGGG 1 cut(s) 854
PfeI GAWTC 3 cut(s) 110, 942, 1268
PkrI GCNGC 8 cut(s) 55, 177, 340, 361, 364, 1106, 1311, 1314
PleI GAGTC 3 cut(s) 41, 172, 412
PpsI GAGTC 3 cut(s) 41, 172, 412
Psp124BI GAGCTC 6 cut(s) 190, 521, 551, 665, 692, 719
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 273, 853
PspGI CCWGG 2 cut(s) 273, 853
PspN4I GGNNCC 3 cut(s) 13, 85, 1098
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 2 cut(s) 83, 368
RsaI GTAC 3 cut(s) 216, 493, 1261
RsaNI GTAC 3 cut(s) 215, 492, 1260
RseI CAYNNNNRTG 2 cut(s) 240, 557
SacI GAGCTC 6 cut(s) 190, 521, 551, 665, 692, 719
SaqAI TTAA 2 cut(s) 327, 1317
SatI GCNGC 8 cut(s) 54, 176, 339, 360, 363, 1105, 1310, 1313
Sau3AI GATC 3 cut(s) 83, 368, 1186
Sau96I GGNCC 1 cut(s) 277
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 3 cut(s) 41, 173, 413
ScrFI CCNGG 6 cut(s) 275, 801, 802, 855, 908, 909
SduI GDGCHC 6 cut(s) 190, 521, 551, 665, 692, 719
SfaNI GCATC 3 cut(s) 1048, 1066, 1347
SfcI CTRYAG 3 cut(s) 363, 522, 582
SmaI CCCGGG 2 cut(s) 802, 909
SmiMI CAYNNNNRTG 2 cut(s) 240, 557
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 7 cut(s) 40, 200, 246, 302, 428, 806, 1360
SsiI CCGC 5 cut(s) 51, 651, 1193, 1352, 1388
SspI AATATT 1 cut(s) 1377
SspMI CTAG 1 cut(s) 1101
SstI GAGCTC 6 cut(s) 190, 521, 551, 665, 692, 719
StyD4I CCNGG 6 cut(s) 273, 799, 800, 853, 906, 907
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 5 cut(s) 260, 980, 1007, 1055, 1282
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 265, 506
TasI AATT 7 cut(s) 40, 200, 246, 302, 428, 806, 1360
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 3 cut(s) 110, 942, 1268
Tru1I TTAA 2 cut(s) 327, 1317
Tru9I TTAA 2 cut(s) 327, 1317
TscAI CASTG 1 cut(s) 313
TseI GCWGC 8 cut(s) 53, 175, 338, 359, 362, 1104, 1309, 1312
TspDTI ATGAA 6 cut(s) 89, 132, 165, 258, 1083, 1370
TspMI CCCGGG 2 cut(s) 800, 907
TspRI CASTG 1 cut(s) 313
XapI RAATTY 4 cut(s) 246, 302, 428, 1360
XceI RCATGY 4 cut(s) 182, 727, 754, 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 1197
XmaI CCCGGG 2 cut(s) 800, 907
XspI CTAG 1 cut(s) 1101
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.