Prupe.5G089600_v2.0.a1

Ran-binding domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
10028154 .. 10035558
7405 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G089600.2

Sequence Viewer

Length: 1521 bp
ATGATGACGAAAGGGACGAAACGTTTCGCCGTATCGGACTCCAATCCTGACTCGGCCTTCCGGAATAAAAGGATAATGGCAGGATCCTCATGTGATGCTAATAGGGCAGAGCCTTCTCAAGAGCAGTCGATAGATACACCTGTATTGAATGCACATCGGGCTGCGTCATCACGGCAGCATGTGAGAGCTCTCAACACCCAATTTGCAAGTTGGGTACAATCACAACTAAAAAATCATCCTGATGAACTTTGGGAAGATGGTCTCCGAGACTACCTAGCTCATGCTTCAAACATTATGGAAAAATTCAGTGACGTTGTTAACTGGCTTAAAGTAAATGCTGCAAAAGGAGAAAATTTGGCCGGGGCTCCAACTGCTGAAAAGAAAATGGTGCCCGAGTCCACGAATAAGGATAAATATTTTCAGCCAAAACCCCTGTTTGCACCAGTTGGTACAACTGCTAACTTTGCAAGTTCTGGATTATACTCCGACAGCCAAAGCTCTGCAGGAGTCTTCTCCAACAACCACTGCTCCACAGGAGAATACCCTTTCCGCCAAAGGTCTGAAGGAGTATCTTCCAACAGTCAAAGCTCTTCGGGAGTATTCAGCAGCCAGAGCTCACCAGCTTTATGGAGTTCTGGAGTGTTCTCCAACAGCCAAAGTTCTACTGGAGTCTTCTCCAACAACCACAGCTCTACAGGTGAACTACCTACTGGCCAAAGTTCTGCAGGAGTATCTTCCAACAGCCAAAGCTCTTCAGGAGTACTCAGCAGCCAGATCTCCCCAGTCTTCTCCGGTGTTCAAAGCTCCGGAATATTTTCCAATACCCAAAGCTCCGGAGTATTTTCCAATAGTCAAAGTTCTGCGGCATTCTCCAAAACTCCCAGTTTTGGGTTATTCTCCAACAGTCAAAGCTCTGGATCGTCCTCCAATAGTCAAAGTTCTGCAACATTCTCCAGCACTCCCAGTTTTGGATTATTTTCCAACAGTCAAAGCTCTGGGTTGTCCTCCAACAGTCAGCCCCCTTCCTTGTTTGGAATTCAAAGTTCGGTTCCCACAAAGCATGATGCTTCAGATGAAGCAGATGTTGAAAATGACTTGGAGCAACCTAGCAGCCCATCTGTGAAAAAGTCTGAAGAAAAGGGTGTTGTCCTGGTCCATGAAGTCAAGTGCAAACTTTATGTGAAGTCAAGTGATCCAGCAGATAAAGATGCCTGGAAAGATAAAGGCACAGGGCAGCTATCTATTAAATGCAAAGAGGGTGTCAGCAAGGGTACAAAAGAATCAAAACCAACAATCATTGTTCGAAATGATGTGGGGAAAGTGCAGCTTAATGCTTTGTTATATTCAGGCATCAAGACGAATCTACAGAAGAATTCCATTGTTGCAATATTCCATACTATGGGCGAAGGTGATGGAAATGATGGTAGTGCTGTGGCGCGTACCTTCTTGATTAGGTTGAAAACAGAGGAGGATAGAAACAAACTGGCCACAGCAATCCAAGAATATGCCCCTGCATCCTGA

Protein Analysis

507

Amino Acids

53.64

Weight (kDa)

8.18

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 1399
AccII CGCG 1 cut(s) 1438
AccIII TCCGGA 3 cut(s) 60, 806, 833
AciI CCGC 2 cut(s) 550, 863
AclI AACGTT 1 cut(s) 22
AclWI GGATC 4 cut(s) 78, 91, 925, 1187
AcoI YGGCCR 3 cut(s) 357, 712, 1485
AcsI RAATTY 4 cut(s) 302, 352, 1035, 1372
AcuI CTGAAG 4 cut(s) 582, 738, 1053, 1152
AfaI GTAC 5 cut(s) 216, 451, 762, 1273, 1441
AfiI CCNNNNNNNGG 4 cut(s) 887, 888, 968, 1399
AgsI TTSAA 6 cut(s) 148, 288, 800, 1040, 1088, 1459
AjnI CCWGG 2 cut(s) 1149, 1211
Alw21I GWGCWC 2 cut(s) 190, 617
Alw26I GTCTC 2 cut(s) 261, 266
AlwI GGATC 4 cut(s) 78, 91, 925, 1187
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 3 cut(s) 60, 806, 833
AoxI GGCC 4 cut(s) 54, 357, 712, 1485
ApeKI GCWGC 8 cut(s) 161, 175, 338, 606, 768, 1110, 1234, 1324
ApoI RAATTY 4 cut(s) 302, 352, 1035, 1372
ArsI GACNNNNNNTTYG 2 cut(s) 1245, 1277
Asp700I GAANNNNTTC 2 cut(s) 23, 814
AspLEI GCGC 1 cut(s) 1438
AspS9I GGNCC 1 cut(s) 1153
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 609, 710, 1421
AsuII TTCGAA 1 cut(s) 1303
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 1153
BaeGI GKGCMC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 126, 159
BalI TGGCCA 2 cut(s) 714, 1487
BamHI GGATCC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 388
BanII GRGCYC 3 cut(s) 190, 367, 617
BbsI GAAGAC 3 cut(s) 502, 664, 778
Bbv12I GWGCWC 2 cut(s) 190, 617
BbvI GCAGC 8 cut(s) 148, 187, 325, 618, 780, 1122, 1246, 1336
BccI CCATC 4 cut(s) 251, 1123, 1406, 1415
BceAI ACGGC 2 cut(s) 14, 188
BciT130I CCWGG 2 cut(s) 1151, 1213
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 261, 266
BfaI CTAG 2 cut(s) 275, 1107
BfmI CTRYAG 4 cut(s) 501, 693, 723, 1364
BglII AGATCT 1 cut(s) 774
BisI GCNGC 9 cut(s) 162, 176, 339, 607, 769, 864, 1111, 1235, 1325
BlsI GCNGC 9 cut(s) 163, 177, 340, 608, 770, 865, 1112, 1236, 1326
BmcAI AGTACT 1 cut(s) 762
Bme1390I CCNGG 3 cut(s) 361, 1151, 1213
Bme18I GGWCC 1 cut(s) 1153
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 1153
BmiI GGNNCC 4 cut(s) 85, 366, 390, 1050
BmrFI CCNGG 3 cut(s) 361, 1151, 1213
BmrI ACTGGG 3 cut(s) 776, 876, 957
BmsI GCATC 4 cut(s) 85, 1054, 1198, 1359
BmuI ACTGGG 3 cut(s) 776, 876, 957
BpiI GAAGAC 3 cut(s) 502, 664, 778
BpmI CTGGAG 3 cut(s) 657, 687, 937
Bpu14I TTCGAA 1 cut(s) 1303
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 4 cut(s) 60, 791, 806, 833
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bsc4I CCNNNNNNNGG 4 cut(s) 887, 888, 968, 1399
Bse1I ACTGG 8 cut(s) 326, 443, 670, 715, 782, 882, 963, 1488
BseAI TCCGGA 3 cut(s) 60, 806, 833
BseBI CCWGG 2 cut(s) 1151, 1213
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 2 cut(s) 235, 1514
BseLI CCNNNNNNNGG 4 cut(s) 887, 888, 968, 1399
BseMII CTCAG 1 cut(s) 778
BseNI ACTGG 8 cut(s) 326, 443, 670, 715, 782, 882, 963, 1488
BseRI GAGGAG 1 cut(s) 1481
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 8 cut(s) 148, 187, 325, 618, 780, 1122, 1246, 1336
BsgI GTGCAG 1 cut(s) 1343
Bsh1236I CGCG 1 cut(s) 1438
BshFI GGCC 4 cut(s) 56, 359, 714, 1487
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 2 cut(s) 190, 617
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 5 cut(s) 61, 360, 792, 807, 834
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 887, 888, 968, 1399
BsmAI GTCTC 2 cut(s) 261, 266
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 2 cut(s) 154, 866
BsnI GGCC 4 cut(s) 56, 359, 714, 1487
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 1303
Bsp1286I GDGCHC 4 cut(s) 190, 367, 393, 617
Bsp13I TCCGGA 3 cut(s) 60, 806, 833
Bsp143I GATC 4 cut(s) 83, 774, 917, 1192
BspACI CCGC 2 cut(s) 550, 863
BspANI GGCC 4 cut(s) 56, 359, 714, 1487
BspCNI CTCAG 1 cut(s) 777
BspEI TCCGGA 3 cut(s) 60, 806, 833
BspFNI CGCG 1 cut(s) 1438
BspLI GGNNCC 4 cut(s) 85, 366, 390, 1050
BspMAI CTGCAG 2 cut(s) 505, 727
BspPI GGATC 4 cut(s) 78, 91, 925, 1187
BspQI GCTCTTC 2 cut(s) 595, 757
BspT104I TTCGAA 1 cut(s) 1303
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 266
BsrI ACTGG 8 cut(s) 326, 443, 670, 715, 782, 882, 963, 1488
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 4 cut(s) 83, 774, 917, 1192
Bst2UI CCWGG 2 cut(s) 1151, 1213
Bst4CI ACNGT 4 cut(s) 581, 905, 986, 1013
Bst6I CTCTTC 2 cut(s) 595, 757
BstBI TTCGAA 1 cut(s) 1303
BstDEI CTNAG 1 cut(s) 764
BstF5I GGATG 2 cut(s) 235, 1514
BstFNI CGCG 1 cut(s) 1438
BstHHI GCGC 1 cut(s) 1438
BstKTI GATC 4 cut(s) 86, 777, 920, 1195
BstMAI GTCTC 2 cut(s) 261, 266
BstMBI GATC 4 cut(s) 83, 774, 917, 1192
BstMWI GCNNNNNNNGC 5 cut(s) 104, 158, 371, 464, 612
BstNI CCWGG 2 cut(s) 1151, 1213
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 359, 1149, 1211
BstSFI CTRYAG 4 cut(s) 501, 693, 723, 1364
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 1 cut(s) 1438
BstV1I GCAGC 8 cut(s) 148, 187, 325, 618, 780, 1122, 1246, 1336
BstV2I GAAGAC 3 cut(s) 502, 664, 778
BstX2I RGATCY 2 cut(s) 83, 774
BstXI CCANNNNNNTGG 1 cut(s) 627
BstYI RGATCY 2 cut(s) 83, 774
BsuRI GGCC 4 cut(s) 56, 359, 714, 1487
BtsCI GGATG 2 cut(s) 235, 1514
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 2 cut(s) 313, 523
CfoI GCGC 1 cut(s) 1438
Cfr13I GGNCC 1 cut(s) 1153
CseI GACGC 1 cut(s) 153
Csp6I GTAC 5 cut(s) 215, 450, 761, 1272, 1440
CviAII CATG 5 cut(s) 90, 179, 281, 1061, 1157
CviQI GTAC 5 cut(s) 215, 450, 761, 1272, 1440
DdeI CTNAG 1 cut(s) 764
DpnI GATC 4 cut(s) 85, 776, 919, 1194
DpnII GATC 4 cut(s) 83, 774, 917, 1192
EaeI YGGCCR 3 cut(s) 357, 712, 1485
Eam1104I CTCTTC 2 cut(s) 595, 757
EarI CTCTTC 2 cut(s) 595, 757
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 2 cut(s) 188, 615
Eco24I GRGCYC 3 cut(s) 190, 367, 617
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 1153
Eco53kI GAGCTC 2 cut(s) 188, 615
Eco57I CTGAAG 4 cut(s) 582, 738, 1053, 1152
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 2 cut(s) 188, 615
EcoRI GAATTC 2 cut(s) 1035, 1372
EcoRII CCWGG 2 cut(s) 1149, 1211
EcoT38I GRGCYC 3 cut(s) 190, 367, 617
FaeI CATG 5 cut(s) 93, 182, 284, 1064, 1160
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 89, 178, 280, 1060, 1156
Fnu4HI GCNGC 9 cut(s) 162, 176, 339, 607, 769, 864, 1111, 1235, 1325
FokI GGATG 2 cut(s) 222, 1501
FriOI GRGCYC 3 cut(s) 190, 367, 617
Fsp4HI GCNGC 9 cut(s) 162, 176, 339, 607, 769, 864, 1111, 1235, 1325
FspBI CTAG 2 cut(s) 275, 1107
GlaI GCGC 1 cut(s) 1437
GluI GCNGC 9 cut(s) 162, 176, 339, 607, 769, 864, 1111, 1235, 1325
GsuI CTGGAG 3 cut(s) 657, 687, 937
HaeIII GGCC 4 cut(s) 56, 359, 714, 1487
HapII CCGG 5 cut(s) 61, 360, 792, 807, 834
HgaI GACGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 1438
Hin1II CATG 5 cut(s) 93, 182, 284, 1064, 1160
Hin6I GCGC 1 cut(s) 1436
HinP1I GCGC 1 cut(s) 1436
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 7 cut(s) 38, 50, 395, 507, 669, 1280, 1360
HpaI GTTAAC 1 cut(s) 319
HpaII CCGG 5 cut(s) 61, 360, 792, 807, 834
HphI GGTGA 3 cut(s) 609, 710, 1421
Hpy166II GTNNAC 3 cut(s) 319, 399, 701
Hpy188I TCNGA 6 cut(s) 37, 266, 487, 562, 1072, 1132
Hpy8I GTNNAC 3 cut(s) 319, 399, 701
HpyAV CCTTC 6 cut(s) 67, 123, 557, 1032, 1400, 1453
HpyCH4III ACNGT 4 cut(s) 581, 905, 986, 1013
HpyCH4IV ACGT 2 cut(s) 22, 312
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 158, 371, 464, 612
HpyF3I CTNAG 1 cut(s) 764
HpySE526I ACGT 2 cut(s) 22, 312
Hsp92II CATG 5 cut(s) 93, 182, 284, 1064, 1160
HspAI GCGC 1 cut(s) 1436
Kpn2I TCCGGA 3 cut(s) 60, 806, 833
KspAI GTTAAC 1 cut(s) 319
Kzo9I GATC 4 cut(s) 83, 774, 917, 1192
LguI GCTCTTC 2 cut(s) 595, 757
LmnI GCTCC 5 cut(s) 370, 533, 809, 836, 1099
Lsp1109I GCAGC 8 cut(s) 148, 187, 325, 618, 780, 1122, 1246, 1336
LweI GCATC 4 cut(s) 85, 1054, 1198, 1359
MaeI CTAG 2 cut(s) 275, 1107
MaeII ACGT 2 cut(s) 22, 312
MaeIII GTNAC 1 cut(s) 308
MalI GATC 4 cut(s) 85, 776, 919, 1194
MboI GATC 4 cut(s) 83, 774, 917, 1192
MflI RGATCY 2 cut(s) 83, 774
MhlI GDGCHC 4 cut(s) 190, 367, 393, 617
MlsI TGGCCA 2 cut(s) 714, 1487
MluCI AATT 5 cut(s) 200, 302, 352, 1035, 1372
MluNI TGGCCA 2 cut(s) 714, 1487
MlyI GAGTC 5 cut(s) 32, 44, 404, 516, 678
MnlI CCTC 6 cut(s) 97, 934, 1015, 1249, 1459, 1462
Mox20I TGGCCA 2 cut(s) 714, 1487
MroI TCCGGA 3 cut(s) 60, 806, 833
MroXI GAANNNNTTC 2 cut(s) 23, 814
MscI TGGCCA 2 cut(s) 714, 1487
MseI TTAA 4 cut(s) 318, 327, 1245, 1329
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 2 cut(s) 714, 1487
MspI CCGG 5 cut(s) 61, 360, 792, 807, 834
MspR9I CCNGG 3 cut(s) 361, 1151, 1213
Mva1269I GAATGC 2 cut(s) 154, 866
MvaI CCWGG 2 cut(s) 1151, 1213
MvnI CGCG 1 cut(s) 1438
MwoI GCNNNNNNNGC 5 cut(s) 104, 158, 371, 464, 612
NciI CCSGG 1 cut(s) 361
NdeII GATC 4 cut(s) 83, 774, 917, 1192
NlaIII CATG 5 cut(s) 93, 182, 284, 1064, 1160
NlaIV GGNNCC 4 cut(s) 85, 366, 390, 1050
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 1303
PciSI GCTCTTC 2 cut(s) 595, 757
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 154, 866
PdmI GAANNNNTTC 2 cut(s) 23, 814
PfeI GAWTC 2 cut(s) 1280, 1360
PflMI CCANNNNNTGG 1 cut(s) 1399
PkrI GCNGC 9 cut(s) 163, 177, 340, 608, 770, 865, 1112, 1236, 1326
PleI GAGTC 5 cut(s) 32, 44, 403, 515, 677
PpsI GAGTC 5 cut(s) 32, 44, 403, 515, 677
Psp124BI GAGCTC 2 cut(s) 190, 617
Psp1406I AACGTT 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 1149, 1211
PspGI CCWGG 2 cut(s) 1149, 1211
PspN4I GGNNCC 4 cut(s) 85, 366, 390, 1050
PspPI GGNCC 1 cut(s) 1153
PstI CTGCAG 2 cut(s) 505, 727
PsuI RGATCY 2 cut(s) 83, 774
RsaI GTAC 5 cut(s) 216, 451, 762, 1273, 1441
RsaNI GTAC 5 cut(s) 215, 450, 761, 1272, 1440
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 2 cut(s) 190, 617
SapI GCTCTTC 2 cut(s) 595, 757
SaqAI TTAA 4 cut(s) 318, 327, 1245, 1329
SatI GCNGC 9 cut(s) 162, 176, 339, 607, 769, 864, 1111, 1235, 1325
Sau3AI GATC 4 cut(s) 83, 774, 917, 1192
Sau96I GGNCC 1 cut(s) 1153
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 5 cut(s) 32, 44, 404, 516, 678
ScrFI CCNGG 3 cut(s) 361, 1151, 1213
SduI GDGCHC 4 cut(s) 190, 367, 393, 617
SfaNI GCATC 4 cut(s) 85, 1054, 1198, 1359
SfcI CTRYAG 4 cut(s) 501, 693, 723, 1364
SfuI TTCGAA 1 cut(s) 1303
SinI GGWCC 1 cut(s) 1153
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 5 cut(s) 200, 302, 352, 1035, 1372
SsiI CCGC 2 cut(s) 550, 863
SspI AATATT 3 cut(s) 416, 813, 1389
SspMI CTAG 2 cut(s) 275, 1107
SstI GAGCTC 2 cut(s) 190, 617
StyD4I CCNGG 3 cut(s) 359, 1149, 1211
TaaI ACNGT 4 cut(s) 581, 905, 986, 1013
TaiI ACGT 2 cut(s) 25, 315
TaqI TCGA 2 cut(s) 128, 1303
TasI AATT 5 cut(s) 200, 302, 352, 1035, 1372
TatI WGTACW 1 cut(s) 760
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 2 cut(s) 1280, 1360
Tru1I TTAA 4 cut(s) 318, 327, 1245, 1329
Tru9I TTAA 4 cut(s) 318, 327, 1245, 1329
TscAI CASTG 2 cut(s) 313, 530
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 8 cut(s) 161, 175, 338, 606, 768, 1110, 1234, 1324
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 258, 1089, 1173
TspRI CASTG 2 cut(s) 313, 530
Van91I CCANNNNNTGG 1 cut(s) 1399
VpaK11BI GGWCC 1 cut(s) 1153
XapI RAATTY 4 cut(s) 302, 352, 1035, 1372
XceI RCATGY 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmnI GAANNNNTTC 2 cut(s) 23, 814
XspI CTAG 2 cut(s) 275, 1107
ZrmI AGTACT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.