FvH4_5g01420

Ran-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
883520 .. 888718
5199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01420.t3

Sequence Viewer

Length: 1461 bp
ATGATGGGAGGAACCAAACGTTTCGGATTATCCGATTCCAATTCCGACCCCTCCTTTCAGAACAAAAGAATAATGACAGGATCCTCATTTGATGTTCATAGAGCAGAATTTTCTCAAGAGCAGACTATGGCTACACCTTCATTAGATGAACGGCGAGCTGAGTCATCGCGGCTGCATGTGAGAGCTCTCAACACCCAGTTTGCAAGTTGGGTACAGACACAACTAAAGGATCACCCTGATGAAATTTGGGAAGATGGTATTCGAGATTACCTGGCTCATGCCTCAAACATAATGGACAAATTTAGTGACGTCGTCAACTGGCTTAAAGTAAATGCTGGAAAAGGAGAAACAGTGGTTGCTCCAGGATCTCAGACTTCTGTCGAAAGTAAAAAGGTGCCAGAGTCCACAGACAATGAGACGAACAAATTTCAGTCAACAACCCCTTTCTCATTTGGTGCAACCACAAACTTTACAGCTCCATGGAGTGCTGGAGTGTTCTCGAGCAGCCAGAGCTCTTCAGGAGTTTTCTCCAACAACCATAGCTCCACAGGAGTGCTTTCTACCAGCAAAAGTTCTACAGGAGTATCTTCCAATGGAAAAAGCTCTTCAGGAGTACATAACAGCTCTCCAGTCTTTTCCCCTAATCAGAGCTCCAGCATGTTTTCAAGTAGTCAGAGCTCCAACATGTTTTCCAATAGCCAAAACTCCGGCATGTTCCCCAACACCCAAAGCTCTGGCATGTTCCCCAACACCCAAAGCTCCAGCATATTCTCCAATAGCCAAAGCCCAGTTTCTTCCAATAGTCAAAGCCCTGGATTATTTTCCAATAGTCAAAGTCTGGGATTATTTTCCAATAGTCAAAGTCCGGCGTTTTTTTCCAACAATCAAAGTTTTGGAGGATTCTCCAACACACCCAGTTTTGGGTTACTCTCCAACAGTCAACCCCCTCCATTGTTTGGAAGTCAGAGTTTAGTTCCTCAAAACCCTGATGCTTCTGATGAAGCAGATGCTGATAATGATGTAAAGCAACCTAGCAGCCCGTCTGTGAAAAAGTCTGAAGAAAAGGGTGTTGTTGTAGTGCACGAAGTCAAGTGCAAACTTTATGTGAAGTCAAGTGATCCAGCGGATAGTTGGAAAGATAAAGGGACAGGGCAGCTAACGATAAGATGCAAAGAGGGTGTCAGCAAGGGTACAAAAGAATCAAAACCAACAGTCATTGTTCGTAATGATGTGGGAAAGCTGCTGCTTAACGCGTTGTTATATTCAGGCATCAAGACTAATCTGCAGAAGAATTCCCTTGTTACAATATTCCATACTGCGGGTGATGGTGATGGAAATGATGGTAGTAATCAAGATAGTGTTGTGACACAAACCTTCTTAATAAGGATGAAGACAGTGGAGGATAGAGATAGACTGGCTACAGCAATCCAAGAATATGCTCCTTCATCTGAAAGCGAGTAA

Protein Analysis

487

Amino Acids

52.11

Weight (kDa)

5.96

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 956
AccII CGCG 2 cut(s) 169, 1253
AciI CCGC 3 cut(s) 169, 1124, 1319
AclI AACGTT 1 cut(s) 19
AclWI GGATC 5 cut(s) 75, 88, 237, 373, 1112
AcsI RAATTY 5 cut(s) 107, 243, 299, 425, 1291
AcuI CTGAAG 3 cut(s) 501, 591, 1077
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 3 cut(s) 213, 615, 1192
AfiI CCNNNNNNNGG 4 cut(s) 920, 921, 956, 1318
AflIII ACRYGT 2 cut(s) 684, 1251
AgsI TTSAA 1 cut(s) 666
AjnI CCWGG 3 cut(s) 270, 361, 811
AleI CACNNNNGTG 1 cut(s) 551
Alw21I GWGCWC 5 cut(s) 187, 515, 653, 680, 1083
Alw26I GTCTC 1 cut(s) 410
Alw44I GTGCAC 1 cut(s) 1079
AlwI GGATC 5 cut(s) 75, 88, 237, 373, 1112
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 1079
ApeKI GCWGC 6 cut(s) 172, 504, 1035, 1153, 1240, 1243
ApoI RAATTY 5 cut(s) 107, 243, 299, 425, 1291
ArsI GACNNNNNNTTYG 2 cut(s) 1164, 1196
AsuHPI GGTGA 3 cut(s) 224, 1334, 1340
AvaI CYCGRG 1 cut(s) 499
BaeGI GKGCMC 1 cut(s) 1083
BaeI ACNNNNGTAYC 2 cut(s) 567, 600
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 4 cut(s) 187, 515, 653, 680
BbsI GAAGAC 1 cut(s) 1397
Bbv12I GWGCWC 5 cut(s) 187, 515, 653, 680, 1083
BbvI GCAGC 6 cut(s) 159, 516, 1047, 1165, 1227, 1230
BccI CCATC 4 cut(s) 248, 1319, 1325, 1334
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 272, 363, 813
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 3 cut(s) 576, 1283, 1419
BisI GCNGC 7 cut(s) 170, 173, 505, 1036, 1154, 1241, 1244
BlsI GCNGC 7 cut(s) 171, 174, 506, 1037, 1155, 1242, 1245
Bme1390I CCNGG 3 cut(s) 272, 363, 813
BmeT110I CYCGRG 1 cut(s) 499
BmiI GGNNCC 3 cut(s) 13, 82, 396
BmrFI CCNGG 3 cut(s) 272, 363, 813
BmrI ACTGGG 3 cut(s) 190, 782, 909
BmsI GCATC 4 cut(s) 979, 997, 1157, 1278
BmuI ACTGGG 3 cut(s) 190, 782, 909
BoxI GACNNNNGTC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 1397
BpmI CTGGAG 5 cut(s) 345, 510, 612, 637, 745
BpuEI CTTGAG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 479, 811
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 920, 921, 956, 1318
Bse1I ACTGG 6 cut(s) 196, 323, 629, 788, 915, 1419
BseBI CCWGG 3 cut(s) 272, 363, 813
BseDI CCNNGG 2 cut(s) 479, 811
BseGI GGATG 1 cut(s) 1392
BseLI CCNNNNNNNGG 4 cut(s) 920, 921, 956, 1318
BseMII CTCAG 2 cut(s) 150, 383
BseNI ACTGG 6 cut(s) 196, 323, 629, 788, 915, 1419
BseSI GKGCMC 1 cut(s) 1083
BseXI GCAGC 6 cut(s) 159, 516, 1047, 1165, 1227, 1230
Bsh1236I CGCG 2 cut(s) 169, 1253
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 5 cut(s) 187, 515, 653, 680, 1083
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 2 cut(s) 708, 866
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 4 cut(s) 920, 921, 956, 1318
BsmAI GTCTC 1 cut(s) 410
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 1159
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 5 cut(s) 187, 515, 653, 680, 1083
Bsp143I GATC 4 cut(s) 80, 229, 365, 1117
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 3 cut(s) 169, 1124, 1319
BspCNI CTCAG 2 cut(s) 151, 382
BspFNI CGCG 2 cut(s) 169, 1253
BspLI GGNNCC 3 cut(s) 13, 82, 396
BspMAI CTGCAG 1 cut(s) 1287
BspPI GGATC 5 cut(s) 75, 88, 237, 373, 1112
BspQI GCTCTTC 2 cut(s) 520, 610
BspT107I GGYRCC 1 cut(s) 394
BsrI ACTGG 6 cut(s) 196, 323, 629, 788, 915, 1419
BssECI CCNNGG 2 cut(s) 479, 811
BssMI GATC 4 cut(s) 80, 229, 365, 1117
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 272, 363, 813
Bst4CI ACNGT 4 cut(s) 352, 938, 1213, 1396
Bst6I CTCTTC 2 cut(s) 520, 610
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 159, 369
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 1392
BstFNI CGCG 2 cut(s) 169, 1253
BstKTI GATC 4 cut(s) 83, 232, 368, 1120
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 4 cut(s) 80, 229, 365, 1117
BstMWI GCNNNNNNNGC 1 cut(s) 510
BstNI CCWGG 3 cut(s) 272, 363, 813
BstNSI RCATGY 5 cut(s) 179, 661, 688, 715, 742
BstPAI GACNNNNGTC 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 270, 361, 811
BstSFI CTRYAG 3 cut(s) 576, 1283, 1419
BstSLI GKGCMC 1 cut(s) 1083
BstUI CGCG 2 cut(s) 169, 1253
BstV1I GCAGC 6 cut(s) 159, 516, 1047, 1165, 1227, 1230
BstV2I GAAGAC 1 cut(s) 1397
BstX2I RGATCY 2 cut(s) 80, 365
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 2 cut(s) 80, 365
BtgI CCRYGG 1 cut(s) 479
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 1392
BtsIMutI CAGTG 2 cut(s) 357, 1401
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 1010
Csp6I GTAC 3 cut(s) 212, 614, 1191
CviAII CATG 7 cut(s) 176, 278, 480, 658, 685, 712, 739
CviQI GTAC 3 cut(s) 212, 614, 1191
DdeI CTNAG 2 cut(s) 159, 369
DpnI GATC 4 cut(s) 82, 231, 367, 1119
DpnII GATC 4 cut(s) 80, 229, 365, 1117
Eam1104I CTCTTC 2 cut(s) 520, 610
EarI CTCTTC 2 cut(s) 520, 610
Ecl136II GAGCTC 4 cut(s) 185, 513, 651, 678
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 4 cut(s) 187, 515, 653, 680
Eco53kI GAGCTC 4 cut(s) 185, 513, 651, 678
Eco57I CTGAAG 3 cut(s) 501, 591, 1077
Eco88I CYCGRG 1 cut(s) 499
EcoICRI GAGCTC 4 cut(s) 185, 513, 651, 678
EcoRI GAATTC 1 cut(s) 1291
EcoRII CCWGG 3 cut(s) 270, 361, 811
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 4 cut(s) 187, 515, 653, 680
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 7 cut(s) 179, 281, 483, 661, 688, 715, 742
FaqI GGGAC 1 cut(s) 1159
FatI CATG 7 cut(s) 175, 277, 479, 657, 684, 711, 738
FauI CCCGC 1 cut(s) 1312
Fnu4HI GCNGC 7 cut(s) 170, 173, 505, 1036, 1154, 1241, 1244
FokI GGATG 1 cut(s) 1399
FriOI GRGCYC 4 cut(s) 187, 515, 653, 680
Fsp4HI GCNGC 7 cut(s) 170, 173, 505, 1036, 1154, 1241, 1244
FspBI CTAG 1 cut(s) 1032
GluI GCNGC 7 cut(s) 170, 173, 505, 1036, 1154, 1241, 1244
GsuI CTGGAG 5 cut(s) 345, 510, 612, 637, 745
HapII CCGG 2 cut(s) 708, 866
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 7 cut(s) 179, 281, 483, 661, 688, 715, 742
HincII GTYRAC 3 cut(s) 316, 435, 941
HindII GTYRAC 3 cut(s) 316, 435, 941
HinfI GANTC 5 cut(s) 35, 161, 401, 900, 1199
HpaII CCGG 2 cut(s) 708, 866
HphI GGTGA 3 cut(s) 224, 1334, 1340
Hpy166II GTNNAC 5 cut(s) 316, 405, 435, 941, 1081
Hpy188III TCNNGA 7 cut(s) 116, 263, 499, 519, 609, 1273, 1352
Hpy8I GTNNAC 5 cut(s) 316, 405, 435, 941, 1081
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 147, 1384, 1452
HpyCH4III ACNGT 4 cut(s) 352, 938, 1213, 1396
HpyCH4IV ACGT 2 cut(s) 19, 309
HpyCH4V TGCA 7 cut(s) 175, 203, 458, 1081, 1095, 1170, 1285
HpyF10VI GCNNNNNNNGC 1 cut(s) 510
HpyF3I CTNAG 2 cut(s) 159, 369
HpySE526I ACGT 2 cut(s) 19, 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 7 cut(s) 179, 281, 483, 661, 688, 715, 742
Kzo9I GATC 4 cut(s) 80, 229, 365, 1117
LguI GCTCTTC 2 cut(s) 520, 610
LmnI GCTCC 7 cut(s) 364, 481, 548, 656, 683, 764, 1444
Lsp1109I GCAGC 6 cut(s) 159, 516, 1047, 1165, 1227, 1230
LweI GCATC 4 cut(s) 979, 997, 1157, 1278
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 2 cut(s) 19, 309
MaeIII GTNAC 4 cut(s) 305, 924, 1300, 1363
MalI GATC 4 cut(s) 82, 231, 367, 1119
MboI GATC 4 cut(s) 80, 229, 365, 1117
MboII GAAGA 8 cut(s) 263, 507, 579, 597, 786, 1070, 1300, 1402
MflI RGATCY 2 cut(s) 80, 365
MhlI GDGCHC 5 cut(s) 187, 515, 653, 680, 1083
MluCI AATT 6 cut(s) 40, 107, 243, 299, 425, 1291
MluI ACGCGT 1 cut(s) 1251
MlyI GAGTC 2 cut(s) 170, 410
MmeI TCCRAC 7 cut(s) 69, 555, 705, 903, 930, 957, 1112
MnlI CCTC 8 cut(s) 61, 94, 292, 890, 957, 987, 1168, 1393
MseI TTAA 3 cut(s) 324, 1248, 1379
MslI CAYNNNNRTG 2 cut(s) 237, 551
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 2 cut(s) 708, 866
MspR9I CCNGG 3 cut(s) 272, 363, 813
MvaI CCWGG 3 cut(s) 272, 363, 813
MvnI CGCG 2 cut(s) 169, 1253
MwoI GCNNNNNNNGC 1 cut(s) 510
NcoI CCATGG 1 cut(s) 479
NdeII GATC 4 cut(s) 80, 229, 365, 1117
NlaIII CATG 7 cut(s) 179, 281, 483, 661, 688, 715, 742
NlaIV GGNNCC 3 cut(s) 13, 82, 396
NmuCI GTSAC 2 cut(s) 305, 1363
NspI RCATGY 5 cut(s) 179, 661, 688, 715, 742
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 499
PciI ACATGT 1 cut(s) 684
PciSI GCTCTTC 2 cut(s) 520, 610
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 3 cut(s) 35, 900, 1199
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 956
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 7 cut(s) 171, 174, 506, 1037, 1155, 1242, 1245
PleI GAGTC 2 cut(s) 169, 409
PpsI GAGTC 2 cut(s) 169, 409
PscI ACATGT 1 cut(s) 684
PshAI GACNNNNGTC 1 cut(s) 377
Psp124BI GAGCTC 4 cut(s) 187, 515, 653, 680
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 270, 361, 811
PspGI CCWGG 3 cut(s) 270, 361, 811
PspN4I GGNNCC 3 cut(s) 13, 82, 396
PstI CTGCAG 1 cut(s) 1287
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 2 cut(s) 80, 365
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 3 cut(s) 213, 615, 1192
RsaNI GTAC 3 cut(s) 212, 614, 1191
RseI CAYNNNNRTG 2 cut(s) 237, 551
SacI GAGCTC 4 cut(s) 187, 515, 653, 680
SapI GCTCTTC 2 cut(s) 520, 610
SaqAI TTAA 3 cut(s) 324, 1248, 1379
SatI GCNGC 7 cut(s) 170, 173, 505, 1036, 1154, 1241, 1244
Sau3AI GATC 4 cut(s) 80, 229, 365, 1117
SchI GAGTC 2 cut(s) 170, 410
ScrFI CCNGG 3 cut(s) 272, 363, 813
SduI GDGCHC 5 cut(s) 187, 515, 653, 680, 1083
SfaNI GCATC 4 cut(s) 979, 997, 1157, 1278
SfcI CTRYAG 3 cut(s) 576, 1283, 1419
Sfr274I CTCGAG 1 cut(s) 499
SlaI CTCGAG 1 cut(s) 499
SmiMI CAYNNNNRTG 2 cut(s) 237, 551
SmlI CTYRAG 2 cut(s) 114, 499
SmoI CTYRAG 2 cut(s) 114, 499
Sse9I AATT 6 cut(s) 40, 107, 243, 299, 425, 1291
SsiI CCGC 3 cut(s) 169, 1124, 1319
SspI AATATT 1 cut(s) 1308
SspMI CTAG 1 cut(s) 1032
SstI GAGCTC 4 cut(s) 187, 515, 653, 680
StyD4I CCNGG 3 cut(s) 270, 361, 811
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 4 cut(s) 352, 938, 1213, 1396
TaiI ACGT 2 cut(s) 22, 312
TaqI TCGA 3 cut(s) 262, 381, 500
TasI AATT 6 cut(s) 40, 107, 243, 299, 425, 1291
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 35, 900, 1199
Tru1I TTAA 3 cut(s) 324, 1248, 1379
Tru9I TTAA 3 cut(s) 324, 1248, 1379
TscAI CASTG 2 cut(s) 357, 1401
TseFI GTSAC 2 cut(s) 305, 1363
TseI GCWGC 6 cut(s) 172, 504, 1035, 1153, 1240, 1243
Tsp45I GTSAC 2 cut(s) 305, 1363
TspDTI ATGAA 7 cut(s) 86, 129, 162, 255, 1014, 1403, 1434
TspRI CASTG 2 cut(s) 357, 1401
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 956
VneI GTGCAC 1 cut(s) 1079
XapI RAATTY 5 cut(s) 107, 243, 299, 425, 1291
XceI RCATGY 5 cut(s) 179, 661, 688, 715, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1128
XhoI CTCGAG 1 cut(s) 499
XspI CTAG 1 cut(s) 1032
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.