Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003890.1

Orthogroup ID

OG0009962

Physical Location & Seq

Genomic Coordinates Reverse (-)

46301 .. 51940

Gene Structure 5640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003890.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

atgatgggaggagccaaacgtttcggcttatcagataccaactccgactccgccgcctttcggaacaaaagaataatgacaggatcctcatttgatgttcatagagcagaatcttctcaagagcagattacggctacaccttcattggatgaacggcgagctgagtcatcgcggcggcatgtgagagctctcaacacccaatttgcaagttgggtacagacacaactaaaaaatcagcctgatgaaatttgggaagacggtattcgagattacctggcccatgcttcaaacatcatggaaaaattcagtgacgttgtgaactggcttaaagtaaatgctgcaaaaggagaaactttggctgctgcaggatctcagacttctactgagaagaaaaaggagtcggagtccacaaagaatgagacgaacaaatttcaggcgacaacccctttctcgtcagttggtgcaaccacaaactttacagctccatggagtactggagtgttctcgaacagccagagctctacaggagtattctccaacaaccatagctccaccggagtgttctctaccagcaaaagttctacaggagtatcttccaatggccaaagctattcaggattatataacagccaaagctctccagtcttctccgctaatcagagctccagcatattttccagtagtcagagctccagcatattttccagtagtcagagttccggcatgttctccaatagccaaagctccagcatgttttccaatagccaaagctccggcatgttttccaatagtcaaagccccgggcaattctcaaatagtcaaagctctaaagtttcttccgatagtcaaagccctgggttattttccaatagtcaaagcccggcattattttccaatagtcaaagcccgggattattttccaacaatcaaagttttgggggattctccaacactcccagttttgggttattctccaacagtcaaagttctggggcattgtccaatagtcaaccccctcccttgtttggaagtcagagttcagttcctcaaaaccgtgatggttctgatgaagcagatgctgataatgatgtggaggaacctagcagcccatctgtgaaaaagtctgaagaaaagggtgttgttgtagtccacgaagtcaagtgcaaactttatgtgaagtcaagtgatccagcggatagttggaaagataaagggacagggcagctaacgataagatgcaaagagggtgtcagcaagggtacaaaagaatcaaaaccaacagtcattgttcggaatgatgtgggaaagctgctgcttaacgcgttgttatattcaggcatcaagactaatccgcagaagaattcccttgttgcaatatttcatactgcgggctatggtgatggaaatgaaggtagtaatcaagatagtgtcgtggcacaaaccttcttaataaggatgaagacagaggaggatagaaataaactggccacagcaatccaagaatatgctcctgcatctgaaagcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001838 GO:0001841 GO:0002009 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008536 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016331 GO:0017016 GO:0017038 GO:0019899 GO:0021915 GO:0031090 GO:0031267 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0035148 GO:0035239 GO:0035295 GO:0042886 GO:0043009 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048598 GO:0048646 GO:0048729 GO:0048731 GO:0048856 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060429 GO:0060562 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072175 GO:0072594 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

509

Amino Acids

54.33

Weight (kDa)

6.36

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11790
fragaria_vesca	FvH4_5g01420 FvH4_5g01420 FvH4_5g01420 FvH4_5g01420
malus_domestica	MD04G1068600.v1.1 MD06G1071900.v1.1
prunus_persica	Prupe.5G089600_v2.0.a1 Prupe.5G089600_v2.0.a1
pyrus_communis	pycom04g06190 pycom06g07100
rosa_chinensis	RchiOBHm_Chr7g0199441
rosa_laevigata	RLG00000003792
rosa_multiflora	Rmu_sc0003890.1_g000007
rosa_roxburghii	Rroxscaffold_3G00256720
rosa_rugosa	Rorug07G0054000
rosa_samantha	Rh7AG179100 Rh7BG182500 Rh7CG187700 Rh7DG182000
rosa_wichuraiana	Rw7G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	172, 1322
AciI	CCGC	8 cut(s)	51, 54, 172, 175, 651, 1193, 1352, 1388
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	4 cut(s)	78, 91, 376, 1181
AcoI	YGGCCR	2 cut(s)	601, 1485
AcsI	RAATTY	4 cut(s)	246, 302, 428, 1360
AcuI	CTGAAG	1 cut(s)	1146
AfaI	GTAC	3 cut(s)	216, 493, 1261
AfiI	CCNNNNNNNGG	4 cut(s)	60, 962, 963, 1025
AflIII	ACRYGT	1 cut(s)	1320
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	2 cut(s)	273, 853
AleI	CACNNNNGTG	1 cut(s)	557
Alw21I	GWGCWC	4 cut(s)	190, 521, 665, 692
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	4 cut(s)	78, 91, 376, 1181
AlwNI	CAGNNNCTG	1 cut(s)	1079
Ama87I	CYCGRG	2 cut(s)	800, 907
AoxI	GGCC	3 cut(s)	276, 601, 1485
ApeKI	GCWGC	7 cut(s)	338, 359, 362, 1104, 1222, 1309, 1312
ApoI	RAATTY	4 cut(s)	246, 302, 428, 1360
ArsI	GACNNNNNNTTYG	2 cut(s)	1233, 1265
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	5 cut(s)	801, 802, 881, 908, 909
AsuHPI	GGTGA	1 cut(s)	1409
AvaI	CYCGRG	2 cut(s)	800, 907
BaeI	ACNNNNGTAYC	2 cut(s)	573, 606
BalI	TGGCCA	2 cut(s)	603, 1487
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	4 cut(s)	190, 521, 665, 692
BbsI	GAAGAC	3 cut(s)	261, 637, 1466
Bbv12I	GWGCWC	4 cut(s)	190, 521, 665, 692
BbvI	GCAGC	7 cut(s)	325, 346, 349, 1116, 1234, 1296, 1299
BccI	CCATC	3 cut(s)	1052, 1117, 1394
BceAI	ACGGC	2 cut(s)	147, 170
BciT130I	CCWGG	2 cut(s)	275, 855
BcnI	CCSGG	5 cut(s)	801, 802, 881, 908, 909
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	1 cut(s)	1101
BfmI	CTRYAG	3 cut(s)	363, 522, 582
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	7 cut(s)	275, 801, 802, 855, 881, 908, 909
BmeT110I	CYCGRG	2 cut(s)	800, 907
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	3 cut(s)	13, 85, 1098
BmrFI	CCNGG	7 cut(s)	275, 801, 802, 855, 881, 908, 909
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	4 cut(s)	1066, 1226, 1347, 1523
BmuI	ACTGGG	1 cut(s)	951
BpiI	GAAGAC	3 cut(s)	261, 637, 1466
BpmI	CTGGAG	5 cut(s)	516, 624, 649, 676, 730
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	5 cut(s)	801, 802, 881, 908, 909
BsaJI	CCNNGG	6 cut(s)	485, 799, 800, 853, 854, 907
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 62, 389, 419, 533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 962, 963, 1025
Bse1I	ACTGG	7 cut(s)	326, 499, 641, 678, 705, 957, 1488
BseBI	CCWGG	2 cut(s)	275, 855
BseDI	CCNNGG	6 cut(s)	485, 799, 800, 853, 854, 907
BseGI	GGATG	2 cut(s)	154, 1461
BseLI	CCNNNNNNNGG	4 cut(s)	60, 962, 963, 1025
BseMII	CTCAG	3 cut(s)	153, 375, 386
BseNI	ACTGG	7 cut(s)	326, 499, 641, 678, 705, 957, 1488
BseRI	GAGGAG	2 cut(s)	24, 1481
BseXI	GCAGC	7 cut(s)	325, 346, 349, 1116, 1234, 1296, 1299
Bsh1236I	CGCG	2 cut(s)	172, 1322
BshFI	GGCC	3 cut(s)	278, 603, 1487
BsiHKAI	GWGCWC	4 cut(s)	190, 521, 665, 692
BsiHKCI	CYCGRG	2 cut(s)	800, 907
BsiSI	CCGG	6 cut(s)	555, 720, 774, 801, 881, 908
BslFI	GGGAC	1 cut(s)	1228
BslI	CCNNNNNNNGG	4 cut(s)	60, 962, 963, 1025
BsmAI	GTCTC	1 cut(s)	413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	1228
BsnI	GGCC	3 cut(s)	278, 603, 1487
BsoBI	CYCGRG	2 cut(s)	800, 907
Bsp1286I	GDGCHC	4 cut(s)	190, 521, 665, 692
Bsp143I	GATC	3 cut(s)	83, 368, 1186
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	8 cut(s)	51, 54, 172, 175, 651, 1193, 1352, 1388
BspANI	GGCC	3 cut(s)	278, 603, 1487
BspCNI	CTCAG	3 cut(s)	154, 376, 385
BspFNI	CGCG	2 cut(s)	172, 1322
BspLI	GGNNCC	3 cut(s)	13, 85, 1098
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	4 cut(s)	78, 91, 376, 1181
BsrI	ACTGG	7 cut(s)	326, 499, 641, 678, 705, 957, 1488
BssECI	CCNNGG	6 cut(s)	485, 799, 800, 853, 854, 907
BssMI	GATC	3 cut(s)	83, 368, 1186
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	275, 855
Bst4CI	ACNGT	4 cut(s)	260, 980, 1055, 1282
BstC8I	GCNNGC	2 cut(s)	159, 1390
BstDEI	CTNAG	3 cut(s)	162, 372, 384
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	154, 1461
BstFNI	CGCG	2 cut(s)	172, 1322
BstKTI	GATC	3 cut(s)	86, 371, 1189
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	83, 368, 1186
BstNI	CCWGG	2 cut(s)	275, 855
BstNSI	RCATGY	4 cut(s)	182, 727, 754, 781
BstSCI	CCNGG	7 cut(s)	273, 799, 800, 853, 879, 906, 907
BstSFI	CTRYAG	3 cut(s)	363, 522, 582
BstUI	CGCG	2 cut(s)	172, 1322
BstV1I	GCAGC	7 cut(s)	325, 346, 349, 1116, 1234, 1296, 1299
BstV2I	GAAGAC	3 cut(s)	261, 637, 1466
BstX2I	RGATCY	2 cut(s)	83, 368
BstYI	RGATCY	2 cut(s)	83, 368
BsuRI	GGCC	3 cut(s)	278, 603, 1487
BtgI	CCRYGG	1 cut(s)	485
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	154, 1461
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	159, 1390
CaiI	CAGNNNCTG	1 cut(s)	1079
Cfr13I	GGNCC	1 cut(s)	277
Cfr9I	CCCGGG	2 cut(s)	800, 907
Csp6I	GTAC	3 cut(s)	215, 492, 1260
CviAII	CATG	7 cut(s)	179, 281, 295, 486, 724, 751, 778
CviQI	GTAC	3 cut(s)	215, 492, 1260
DdeI	CTNAG	3 cut(s)	162, 372, 384
DpnI	GATC	3 cut(s)	85, 370, 1188
DpnII	GATC	3 cut(s)	83, 368, 1186
EaeI	YGGCCR	2 cut(s)	601, 1485
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	4 cut(s)	188, 519, 663, 690
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	4 cut(s)	190, 521, 665, 692
Eco53kI	GAGCTC	4 cut(s)	188, 519, 663, 690
Eco57I	CTGAAG	1 cut(s)	1146
Eco88I	CYCGRG	2 cut(s)	800, 907
EcoICRI	GAGCTC	4 cut(s)	188, 519, 663, 690
EcoRI	GAATTC	1 cut(s)	1360
EcoRII	CCWGG	2 cut(s)	273, 853
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	4 cut(s)	190, 521, 665, 692
ErhI	CCWWGG	1 cut(s)	485
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	7 cut(s)	182, 284, 298, 489, 727, 754, 781
FaqI	GGGAC	1 cut(s)	1228
FatI	CATG	7 cut(s)	178, 280, 294, 485, 723, 750, 777
FauI	CCCGC	1 cut(s)	1381
FokI	GGATG	2 cut(s)	161, 1468
FriOI	GRGCYC	4 cut(s)	190, 521, 665, 692
FspBI	CTAG	1 cut(s)	1101
GsuI	CTGGAG	5 cut(s)	516, 624, 649, 676, 730
HaeIII	GGCC	3 cut(s)	278, 603, 1487
HapII	CCGG	6 cut(s)	555, 720, 774, 801, 881, 908
Hin1II	CATG	7 cut(s)	182, 284, 298, 489, 727, 754, 781
HincII	GTYRAC	1 cut(s)	1010
HindII	GTYRAC	1 cut(s)	1010
HinfI	GANTC	7 cut(s)	47, 110, 164, 398, 404, 942, 1268
HpaII	CCGG	6 cut(s)	555, 720, 774, 801, 881, 908
HphI	GGTGA	1 cut(s)	1409
Hpy166II	GTNNAC	4 cut(s)	319, 408, 1010, 1150
Hpy188III	TCNNGA	6 cut(s)	119, 266, 505, 615, 1342, 1421
Hpy8I	GTNNAC	4 cut(s)	319, 408, 1010, 1150
HpyAV	CCTTC	3 cut(s)	150, 1403, 1453
HpyCH4III	ACNGT	4 cut(s)	260, 980, 1055, 1282
HpyCH4IV	ACGT	2 cut(s)	19, 312
HpyCH4V	TGCA	8 cut(s)	206, 341, 365, 464, 1164, 1239, 1373, 1514
HpyF3I	CTNAG	3 cut(s)	162, 372, 384
HpySE526I	ACGT	2 cut(s)	19, 312
Hsp92II	CATG	7 cut(s)	182, 284, 298, 489, 727, 754, 781
Kzo9I	GATC	3 cut(s)	83, 368, 1186
LmnI	GCTCC	8 cut(s)	11, 487, 554, 668, 695, 749, 776, 1513
Lsp1109I	GCAGC	7 cut(s)	325, 346, 349, 1116, 1234, 1296, 1299
LweI	GCATC	4 cut(s)	1066, 1226, 1347, 1523
MaeI	CTAG	1 cut(s)	1101
MaeII	ACGT	2 cut(s)	19, 312
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	3 cut(s)	85, 370, 1188
MboI	GATC	3 cut(s)	83, 368, 1186
MboII	GAAGA	9 cut(s)	105, 266, 400, 585, 637, 828, 1139, 1369, 1471
MflI	RGATCY	2 cut(s)	83, 368
MhlI	GDGCHC	4 cut(s)	190, 521, 665, 692
MlsI	TGGCCA	2 cut(s)	603, 1487
MluCI	AATT	6 cut(s)	200, 246, 302, 428, 806, 1360
MluI	ACGCGT	1 cut(s)	1320
MluNI	TGGCCA	2 cut(s)	603, 1487
MlyI	GAGTC	4 cut(s)	41, 173, 407, 413
MmeI	TCCRAC	7 cut(s)	69, 381, 561, 945, 972, 999, 1181
MnlI	CCTC	7 cut(s)	97, 1026, 1056, 1087, 1237, 1459, 1462
Mox20I	TGGCCA	2 cut(s)	603, 1487
MscI	TGGCCA	2 cut(s)	603, 1487
MseI	TTAA	3 cut(s)	327, 1317, 1448
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	2 cut(s)	603, 1487
MspA1I	CMGCKG	1 cut(s)	1193
MspI	CCGG	6 cut(s)	555, 720, 774, 801, 881, 908
MspR9I	CCNGG	7 cut(s)	275, 801, 802, 855, 881, 908, 909
MvaI	CCWGG	2 cut(s)	275, 855
MvnI	CGCG	2 cut(s)	172, 1322
NciI	CCSGG	5 cut(s)	801, 802, 881, 908, 909
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	3 cut(s)	83, 368, 1186
NlaIII	CATG	7 cut(s)	182, 284, 298, 489, 727, 754, 781
NlaIV	GGNNCC	3 cut(s)	13, 85, 1098
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	4 cut(s)	182, 727, 754, 781
OliI	CACNNNNGTG	1 cut(s)	557
PasI	CCCWGGG	1 cut(s)	854
PfeI	GAWTC	3 cut(s)	110, 942, 1268
PleI	GAGTC	4 cut(s)	41, 172, 406, 412
PpsI	GAGTC	4 cut(s)	41, 172, 406, 412
Psp124BI	GAGCTC	4 cut(s)	190, 521, 665, 692
Psp1406I	AACGTT	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	273, 853
PspGI	CCWGG	2 cut(s)	273, 853
PspN4I	GGNNCC	3 cut(s)	13, 85, 1098
PspPI	GGNCC	1 cut(s)	277
PsrI	GAACNNNNNNTAC	2 cut(s)	700, 732
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	2 cut(s)	83, 368
RsaI	GTAC	3 cut(s)	216, 493, 1261
RsaNI	GTAC	3 cut(s)	215, 492, 1260
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	4 cut(s)	190, 521, 665, 692
SaqAI	TTAA	3 cut(s)	327, 1317, 1448
Sau3AI	GATC	3 cut(s)	83, 368, 1186
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	4 cut(s)	41, 173, 407, 413
ScrFI	CCNGG	7 cut(s)	275, 801, 802, 855, 881, 908, 909
SduI	GDGCHC	4 cut(s)	190, 521, 665, 692
SfaNI	GCATC	4 cut(s)	1066, 1226, 1347, 1523
SfcI	CTRYAG	3 cut(s)	363, 522, 582
SmaI	CCCGGG	2 cut(s)	802, 909
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	6 cut(s)	200, 246, 302, 428, 806, 1360
SsiI	CCGC	8 cut(s)	51, 54, 172, 175, 651, 1193, 1352, 1388
SspI	AATATT	1 cut(s)	1377
SspMI	CTAG	1 cut(s)	1101
SstI	GAGCTC	4 cut(s)	190, 521, 665, 692
StyD4I	CCNGG	7 cut(s)	273, 799, 800, 853, 879, 906, 907
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	4 cut(s)	260, 980, 1055, 1282
TaiI	ACGT	2 cut(s)	22, 315
TaqI	TCGA	2 cut(s)	265, 506
TasI	AATT	6 cut(s)	200, 246, 302, 428, 806, 1360
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	3 cut(s)	56, 175, 178
TfiI	GAWTC	3 cut(s)	110, 942, 1268
Tru1I	TTAA	3 cut(s)	327, 1317, 1448
Tru9I	TTAA	3 cut(s)	327, 1317, 1448
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	7 cut(s)	338, 359, 362, 1104, 1222, 1309, 1312
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	8 cut(s)	89, 132, 165, 258, 1083, 1370, 1422, 1472
TspMI	CCCGGG	2 cut(s)	800, 907
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	4 cut(s)	246, 302, 428, 1360
XceI	RCATGY	4 cut(s)	182, 727, 754, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1197
XmaI	CCCGGG	2 cut(s)	800, 907
XspI	CTAG	1 cut(s)	1101
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.