Rroxscaffold_3G00256720

Ran-binding domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
51107831 .. 51113743
5913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256720.1

Sequence Viewer

Length: 1503 bp
ATGATGGGAGGAGCCAAACGTTTCGGCTTATCGGATACCAACTCCGACTCCGCTGCCTTTCGGAACAAAAGAATAATGACAGGATCCTCATTTGATGTTCATAGAGCAGAATCTTCTCAAGAGCAGATTACGGCTACACCTTCATTGGATGAACGCCGAGCCGAGTCATCGCGGCTGCATGTGAGAGCTCTCAACACCCAATTTGCAAGTTGGGTACAGACACAGCTAAAAAATCATCCTGATGAAATTTGGGAAGACGGTATTCGAGATTACTTGGGCCATGCTTCAAACATCATGGAAAAATTCAGTGACGTTGTGAACTGGCTTAAAGTAAATGCTGCAAAAGGAGAAACTTTGGCTGCTGCAGGATCTCAGACTTCTACTGAGAAGAAAAAGGTGTCGGAGTCCACAAAGAATGAGACGAACAAATTTCAGGCGACAACCCCTTTCTCATCAGTTGGTGCAACCACAAACTTTACAGCTCCATGGAGTGCTGGAGTGTTCTTGAACAGCCAGAGCTCTACAGGAGTATTCTCCAACAACCATAGCTCCACAAGAGTGTTCTCTACCAGCAAAAGTTCTACAGGAGTATCTTCCAATGGCCAAAGTTATTCAGGATTATTGAACAGCCAAAGCTCTCCAGTCTTCTCCGCTAATCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCCAGCATGTTCTCCAATAGCCAAAGCTCTGGCATGTTTTCCAATAGCCAAAGCCCCGGGCAATTCTCAAATAGTCAAAGCCCTAAAGTTTCTTCCGATAATCAAAGCCCTGGGTTATTTTCTAGTGGTCAAAGTTCGGCATTATTTTCCAATAGTCAAAGCCCGGGATTATTTTCCAACGATCAAAGTTTTGGGGGATTCTCCAACACTCCCAGTTTTGGGTTATTCTCCAACAATCAAAGTTCTGGGGCATTGTCCAACAGTCAACCCCCTCCCTTGTTTGGAAGTCAGAGTTCAGTTCCTCAAAACCGTGATGCTTCTGATGAAGCAGATGCTGATAATGATGTGGAGGAACCTAGCAGCCCATCTGTGAAAAAGTCTGAAGAAAAGGGTGTTGTTGTAGTCCACGAAGTCAAGTGCAAACTTTATGTGAAGTCAAGTGATCCAGCGGATAGTTGGAAAGATAAAGGGACAGGGCAGCTAACAATAAGATGCAAAGAGGGTGTCAGCAAGGGTACAAAAGAATCAAAACCAACAGTCATTGTTCGGAATGATGTGGGAAAGCTGCTGCTTAACGCGTTGTTATATGCAGGCATCAAGACTAATCCGCAGAAGAATTCCCTTGTTGCAATATTTCATACTGCGGGCGATGGTGATGGAAATGAAGGTAGTAATCAAGATAGTGTCGTGGCACAAACCTTCTTAATAAGGATGAAGACAGAGGAGGATAGAAATAAACTCGCCACAGCAATCCAAGAATATGCTCCTGCATCTGAAAGCGAGTAA

Protein Analysis

500

Amino Acids

53.32

Weight (kDa)

6.22

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ran_BP1 PF00638 363 - 492 4.1e-07 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 172, 1295
AciI CCGC 6 cut(s) 51, 172, 651, 1166, 1325, 1361
AclI AACGTT 1 cut(s) 19
AclWI GGATC 4 cut(s) 78, 91, 376, 1154
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 4 cut(s) 246, 302, 428, 1333
AcuI CTGAAG 1 cut(s) 1119
AfaI GTAC 2 cut(s) 216, 1234
AfiI CCNNNNNNNGG 3 cut(s) 935, 936, 998
AflIII ACRYGT 1 cut(s) 1293
AgsI TTSAA 3 cut(s) 288, 508, 625
AjnI CCWGG 1 cut(s) 826
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 5 cut(s) 190, 521, 665, 692, 719
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 78, 91, 376, 1154
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 2 cut(s) 773, 880
AoxI GGCC 2 cut(s) 277, 601
ApeKI GCWGC 9 cut(s) 53, 175, 338, 359, 362, 1077, 1195, 1282, 1285
ApoI RAATTY 4 cut(s) 246, 302, 428, 1333
ArsI GACNNNNNNTTYG 2 cut(s) 1206, 1238
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 4 cut(s) 774, 775, 881, 882
AsuHPI GGTGA 1 cut(s) 1382
AvaI CYCGRG 2 cut(s) 773, 880
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BalI TGGCCA 1 cut(s) 603
BamHI GGATCC 1 cut(s) 83
BanII GRGCYC 5 cut(s) 190, 521, 665, 692, 719
BbsI GAAGAC 3 cut(s) 261, 637, 1439
Bbv12I GWGCWC 5 cut(s) 190, 521, 665, 692, 719
BbvI GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1089, 1207, 1269, 1272
BccI CCATC 3 cut(s) 1090, 1361, 1367
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 4 cut(s) 774, 775, 881, 882
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 840, 1074
BfmI CTRYAG 3 cut(s) 363, 522, 582
BfuI GTATCC 1 cut(s) 28
Bme1390I CCNGG 5 cut(s) 774, 775, 828, 881, 882
BmeT110I CYCGRG 2 cut(s) 773, 880
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 13, 85, 1071
BmrFI CCNGG 5 cut(s) 774, 775, 828, 881, 882
BmrI ACTGGG 1 cut(s) 924
BmsI GCATC 5 cut(s) 1021, 1039, 1199, 1320, 1496
BmuI ACTGGG 1 cut(s) 924
BpiI GAAGAC 3 cut(s) 261, 637, 1439
BpmI CTGGAG 5 cut(s) 516, 624, 649, 676, 703
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 4 cut(s) 774, 775, 881, 882
BsaJI CCNNGG 6 cut(s) 485, 772, 773, 826, 827, 880
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 935, 936, 998
Bse1I ACTGG 5 cut(s) 326, 641, 678, 705, 930
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 6 cut(s) 485, 772, 773, 826, 827, 880
BseGI GGATG 3 cut(s) 154, 235, 1434
BseLI CCNNNNNNNGG 3 cut(s) 935, 936, 998
BseMII CTCAG 2 cut(s) 375, 386
BseNI ACTGG 5 cut(s) 326, 641, 678, 705, 930
BseRI GAGGAG 2 cut(s) 24, 1454
BseXI GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1089, 1207, 1269, 1272
Bsh1236I CGCG 2 cut(s) 172, 1295
BshFI GGCC 2 cut(s) 279, 603
BsiHKAI GWGCWC 5 cut(s) 190, 521, 665, 692, 719
BsiHKCI CYCGRG 2 cut(s) 773, 880
BsiSI CCGG 2 cut(s) 774, 881
BslFI GGGAC 1 cut(s) 1201
BslI CCNNNNNNNGG 3 cut(s) 935, 936, 998
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 1201
BsnI GGCC 2 cut(s) 279, 603
BsoBI CYCGRG 2 cut(s) 773, 880
Bsp1286I GDGCHC 5 cut(s) 190, 521, 665, 692, 719
Bsp143I GATC 4 cut(s) 83, 368, 898, 1159
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 6 cut(s) 51, 172, 651, 1166, 1325, 1361
BspANI GGCC 2 cut(s) 279, 603
BspCNI CTCAG 2 cut(s) 376, 385
BspFNI CGCG 2 cut(s) 172, 1295
BspLI GGNNCC 3 cut(s) 13, 85, 1071
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 4 cut(s) 78, 91, 376, 1154
BsrI ACTGG 5 cut(s) 326, 641, 678, 705, 930
BssECI CCNNGG 6 cut(s) 485, 772, 773, 826, 827, 880
BssMI GATC 4 cut(s) 83, 368, 898, 1159
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 4 cut(s) 260, 980, 1028, 1255
BstC8I GCNNGC 2 cut(s) 1309, 1363
BstDEI CTNAG 2 cut(s) 372, 384
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 3 cut(s) 154, 235, 1434
BstFNI CGCG 2 cut(s) 172, 1295
BstKTI GATC 4 cut(s) 86, 371, 901, 1162
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 83, 368, 898, 1159
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 3 cut(s) 182, 727, 754
BstSCI CCNGG 5 cut(s) 772, 773, 826, 879, 880
BstSFI CTRYAG 3 cut(s) 363, 522, 582
BstUI CGCG 2 cut(s) 172, 1295
BstV1I GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1089, 1207, 1269, 1272
BstV2I GAAGAC 3 cut(s) 261, 637, 1439
BstX2I RGATCY 2 cut(s) 83, 368
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 2 cut(s) 83, 368
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 279, 603
BtgI CCRYGG 1 cut(s) 485
BtgZI GCGATG 2 cut(s) 153, 1380
BtsCI GGATG 3 cut(s) 154, 235, 1434
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 1309, 1363
CaiI CAGNNNCTG 1 cut(s) 1052
Cfr13I GGNCC 1 cut(s) 277
Cfr9I CCCGGG 2 cut(s) 773, 880
Csp6I GTAC 2 cut(s) 215, 1233
CviAII CATG 6 cut(s) 179, 281, 295, 486, 724, 751
CviQI GTAC 2 cut(s) 215, 1233
DdeI CTNAG 2 cut(s) 372, 384
DpnI GATC 4 cut(s) 85, 370, 900, 1161
DpnII GATC 4 cut(s) 83, 368, 898, 1159
EaeI YGGCCR 1 cut(s) 601
Ecl136II GAGCTC 5 cut(s) 188, 519, 663, 690, 717
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 5 cut(s) 190, 521, 665, 692, 719
Eco53kI GAGCTC 5 cut(s) 188, 519, 663, 690, 717
Eco57I CTGAAG 1 cut(s) 1119
Eco88I CYCGRG 2 cut(s) 773, 880
EcoICRI GAGCTC 5 cut(s) 188, 519, 663, 690, 717
EcoRI GAATTC 1 cut(s) 1333
EcoRII CCWGG 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 5 cut(s) 190, 521, 665, 692, 719
ErhI CCWWGG 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 6 cut(s) 182, 284, 298, 489, 727, 754
FaqI GGGAC 1 cut(s) 1201
FatI CATG 6 cut(s) 178, 280, 294, 485, 723, 750
FauI CCCGC 1 cut(s) 1354
FokI GGATG 3 cut(s) 161, 222, 1441
FriOI GRGCYC 5 cut(s) 190, 521, 665, 692, 719
FspBI CTAG 2 cut(s) 840, 1074
GsuI CTGGAG 5 cut(s) 516, 624, 649, 676, 703
HaeIII GGCC 2 cut(s) 279, 603
HapII CCGG 2 cut(s) 774, 881
Hin1II CATG 6 cut(s) 182, 284, 298, 489, 727, 754
HincII GTYRAC 1 cut(s) 983
HindII GTYRAC 1 cut(s) 983
HinfI GANTC 6 cut(s) 47, 110, 164, 404, 915, 1241
HpaII CCGG 2 cut(s) 774, 881
HphI GGTGA 1 cut(s) 1382
Hpy166II GTNNAC 4 cut(s) 319, 408, 983, 1123
Hpy188III TCNNGA 7 cut(s) 119, 239, 266, 505, 615, 1315, 1394
Hpy8I GTNNAC 4 cut(s) 319, 408, 983, 1123
HpyAV CCTTC 3 cut(s) 150, 1376, 1426
HpyCH4III ACNGT 4 cut(s) 260, 980, 1028, 1255
HpyCH4IV ACGT 2 cut(s) 19, 312
HpyF3I CTNAG 2 cut(s) 372, 384
HpySE526I ACGT 2 cut(s) 19, 312
Hsp92II CATG 6 cut(s) 182, 284, 298, 489, 727, 754
Kzo9I GATC 4 cut(s) 83, 368, 898, 1159
LmnI GCTCC 7 cut(s) 11, 487, 554, 668, 695, 722, 1486
Lsp1109I GCAGC 9 cut(s) 40, 162, 325, 346, 349, 1089, 1207, 1269, 1272
LweI GCATC 5 cut(s) 1021, 1039, 1199, 1320, 1496
MaeI CTAG 2 cut(s) 840, 1074
MaeII ACGT 2 cut(s) 19, 312
MaeIII GTNAC 1 cut(s) 308
MalI GATC 4 cut(s) 85, 370, 900, 1161
MboI GATC 4 cut(s) 83, 368, 898, 1159
MboII GAAGA 9 cut(s) 105, 266, 400, 585, 637, 801, 1112, 1342, 1444
MflI RGATCY 2 cut(s) 83, 368
MhlI GDGCHC 5 cut(s) 190, 521, 665, 692, 719
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 6 cut(s) 200, 246, 302, 428, 779, 1333
MluI ACGCGT 1 cut(s) 1293
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 3 cut(s) 41, 173, 413
MmeI TCCRAC 8 cut(s) 69, 381, 561, 918, 945, 972, 999, 1154
MnlI CCTC 7 cut(s) 97, 999, 1029, 1060, 1210, 1432, 1435
Mox20I TGGCCA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 603
MseI TTAA 3 cut(s) 327, 1290, 1421
MslI CAYNNNNRTG 2 cut(s) 240, 557
Msp20I TGGCCA 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 53, 1166
MspI CCGG 2 cut(s) 774, 881
MspR9I CCNGG 5 cut(s) 774, 775, 828, 881, 882
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 2 cut(s) 172, 1295
NciI CCSGG 4 cut(s) 774, 775, 881, 882
NcoI CCATGG 1 cut(s) 485
NdeII GATC 4 cut(s) 83, 368, 898, 1159
NlaIII CATG 6 cut(s) 182, 284, 298, 489, 727, 754
NlaIV GGNNCC 3 cut(s) 13, 85, 1071
NmeAIII GCCGAG 2 cut(s) 182, 187
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 3 cut(s) 182, 727, 754
OliI CACNNNNGTG 1 cut(s) 557
PasI CCCWGGG 1 cut(s) 827
PfeI GAWTC 3 cut(s) 110, 915, 1241
PleI GAGTC 3 cut(s) 41, 172, 412
PpsI GAGTC 3 cut(s) 41, 172, 412
Psp124BI GAGCTC 5 cut(s) 190, 521, 665, 692, 719
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 3 cut(s) 13, 85, 1071
PspPI GGNCC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 2 cut(s) 83, 368
RsaI GTAC 2 cut(s) 216, 1234
RsaNI GTAC 2 cut(s) 215, 1233
RseI CAYNNNNRTG 2 cut(s) 240, 557
SacI GAGCTC 5 cut(s) 190, 521, 665, 692, 719
SaqAI TTAA 3 cut(s) 327, 1290, 1421
Sau3AI GATC 4 cut(s) 83, 368, 898, 1159
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 3 cut(s) 41, 173, 413
ScrFI CCNGG 5 cut(s) 774, 775, 828, 881, 882
SduI GDGCHC 5 cut(s) 190, 521, 665, 692, 719
SfaNI GCATC 5 cut(s) 1021, 1039, 1199, 1320, 1496
SfcI CTRYAG 3 cut(s) 363, 522, 582
SmaI CCCGGG 2 cut(s) 775, 882
SmiMI CAYNNNNRTG 2 cut(s) 240, 557
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 6 cut(s) 200, 246, 302, 428, 779, 1333
SsiI CCGC 6 cut(s) 51, 172, 651, 1166, 1325, 1361
SspI AATATT 1 cut(s) 1350
SspMI CTAG 2 cut(s) 840, 1074
SstI GAGCTC 5 cut(s) 190, 521, 665, 692, 719
StyD4I CCNGG 5 cut(s) 772, 773, 826, 879, 880
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 4 cut(s) 260, 980, 1028, 1255
TaiI ACGT 2 cut(s) 22, 315
TaqI TCGA 1 cut(s) 265
TasI AATT 6 cut(s) 200, 246, 302, 428, 779, 1333
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 3 cut(s) 110, 915, 1241
Tru1I TTAA 3 cut(s) 327, 1290, 1421
Tru9I TTAA 3 cut(s) 327, 1290, 1421
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 9 cut(s) 53, 175, 338, 359, 362, 1077, 1195, 1282, 1285
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 8 cut(s) 89, 132, 165, 258, 1056, 1343, 1395, 1445
TspMI CCCGGG 2 cut(s) 773, 880
TspRI CASTG 1 cut(s) 313
XapI RAATTY 4 cut(s) 246, 302, 428, 1333
XceI RCATGY 3 cut(s) 182, 727, 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 1170
XmaI CCCGGG 2 cut(s) 773, 880
XspI CTAG 2 cut(s) 840, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.