Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009962

Physical Location & Seq

Genomic Coordinates Forward (+)

16859484 .. 16865586

Gene Structure 6103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG182000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATTTGTGTCTTTTGCGTGATTTTGGATGTGCAGTTTTTGTATCGATGCTTATTGTAATTTCTCTTACATTAATGATGCAGTTTCGGAACAAAAGAATAATGACAGGATCCTCATTTGATGTTCATAGAGCAGAATCTTCTCAAGAGCAGATTACGGCTACACCTTCATTGGATGAACGGCGAGCTGAGTCATCGCGGCGGCATGTGAGAGCTCTCAACACCCAATTTGCAAGTTGGGTACAGACACAACTAAAAAATCAGCCTGATGAAATTTGGGAAGACGGTATTCGAGATTACCTGGCCCATGCTTCAAACATCATGGAAAAATTCAGTGACGTTGTGAACTGGCTTAAAGTAAATGCTGCAAAAGGAGAAACTTTGGCTGCTGCAGGATCTCAGACTTCTACTGAGAAGAAAAAGGAGTCGGAGTCCACAAAGAATGAGACGAACAAATTTCAGGCGACAACCCCTTTCTCGTCAGTTGGTGCAACCACAAACTTTACAGCTCCATGGAGTACTGGAGTGTTCTCGAACAGCCAGAGCTCTACAGGAGTATTCTCCAACAACCATAGCTCCACCGGAGTGTTCTCTACCAGCAAAAGTTCTACAGGAGTATCTTCCAATGGCCAAAGCTATTCAGGATTATATAACAGCCAAAGCTCTCCAGTCTTCTCCGCTAATCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGCTCCAGCATATTTTCCAGTAGTCAGAGTTCCGGCATGTTCTCCAATAGCCAAAGCTCCAGCATGTTTTCCAATAGCCAAAGCTCCGGCATGTTTTCCAATAGCCAAAGCCCCGGGCAATTCTCAAATAGTCAAAGCTCTAAAGTTTCTTCCGATAGTCAAAGCCCTGGGTTATTTTCCAATAGTCAAAGTTCGGCATTATTTTCCAATAGTCAAAGCCCGGGATTATTTTCCAACAATCAAAGTTTTGGGGGATTCTCCAACACTCCCAGTTTTGGGTTATTCTCCAACAGTCAAAGTTCTGGGGCATTGTCCAATAGTCAACCCCCTCCCTTGTTTGGTAGGTGTTGTTTTAGTTACGCATGTCACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001838 GO:0001841 GO:0002009 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008536 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016331 GO:0017016 GO:0017038 GO:0019899 GO:0021915 GO:0031090 GO:0031267 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0035148 GO:0035239 GO:0035295 GO:0042886 GO:0043009 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048598 GO:0048646 GO:0048729 GO:0048731 GO:0048856 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060429 GO:0060562 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072175 GO:0072594 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Ran_BP1

Protein Analysis

362

Amino Acids

38.83

Weight (kDa)

8.6

Isoelectric Point (pI)

68.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11790
fragaria_vesca	FvH4_5g01420 FvH4_5g01420 FvH4_5g01420 FvH4_5g01420
malus_domestica	MD04G1068600.v1.1 MD06G1071900.v1.1
prunus_persica	Prupe.5G089600_v2.0.a1 Prupe.5G089600_v2.0.a1
pyrus_communis	pycom04g06190 pycom06g07100
rosa_chinensis	RchiOBHm_Chr7g0199441
rosa_laevigata	RLG00000003792
rosa_multiflora	Rmu_sc0003890.1_g000007
rosa_roxburghii	Rroxscaffold_3G00256720
rosa_rugosa	Rorug07G0054000
rosa_samantha	Rh7AG179100 Rh7BG182500 Rh7CG187700 Rh7DG182000
rosa_wichuraiana	Rw7G015730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	199, 202, 678
AclWI	GGATC	3 cut(s)	105, 118, 403
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	4 cut(s)	4, 273, 329, 455
AfaI	GTAC	2 cut(s)	243, 520
AfiI	CCNNNNNNNGG	3 cut(s)	989, 990, 1052
AgsI	TTSAA	1 cut(s)	315
AjnI	CCWGG	2 cut(s)	300, 880
AleI	CACNNNNGTG	1 cut(s)	584
Alw21I	GWGCWC	4 cut(s)	217, 548, 692, 719
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	105, 118, 403
Ama87I	CYCGRG	2 cut(s)	827, 934
AoxI	GGCC	2 cut(s)	303, 628
ApeKI	GCWGC	3 cut(s)	365, 386, 389
ApoI	RAATTY	4 cut(s)	4, 273, 329, 455
AseI	ATTAAT	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	4 cut(s)	828, 829, 935, 936
AvaI	CYCGRG	2 cut(s)	827, 934
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BalI	TGGCCA	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	110
BanII	GRGCYC	4 cut(s)	217, 548, 692, 719
BbsI	GAAGAC	2 cut(s)	288, 664
Bbv12I	GWGCWC	4 cut(s)	217, 548, 692, 719
BbvI	GCAGC	3 cut(s)	352, 373, 376
BceAI	ACGGC	2 cut(s)	174, 197
BciT130I	CCWGG	2 cut(s)	302, 882
BcnI	CCSGG	4 cut(s)	828, 829, 935, 936
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	3 cut(s)	390, 549, 609
BisI	GCNGC	5 cut(s)	200, 203, 366, 387, 390
BlsI	GCNGC	5 cut(s)	201, 204, 367, 388, 391
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	6 cut(s)	302, 828, 829, 882, 935, 936
BmeT110I	CYCGRG	2 cut(s)	827, 934
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	6 cut(s)	302, 828, 829, 882, 935, 936
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	2 cut(s)	39, 69
BmuI	ACTGGG	1 cut(s)	978
BpiI	GAAGAC	2 cut(s)	288, 664
BpmI	CTGGAG	5 cut(s)	543, 651, 676, 703, 757
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	4 cut(s)	828, 829, 935, 936
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	512, 826, 827, 880, 881, 934
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	416, 446, 560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	989, 990, 1052
Bse1I	ACTGG	6 cut(s)	353, 526, 668, 705, 732, 984
BseBI	CCWGG	2 cut(s)	302, 882
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	6 cut(s)	512, 826, 827, 880, 881, 934
BseGI	GGATG	2 cut(s)	35, 181
BseLI	CCNNNNNNNGG	3 cut(s)	989, 990, 1052
BseMII	CTCAG	3 cut(s)	180, 402, 413
BseNI	ACTGG	6 cut(s)	353, 526, 668, 705, 732, 984
BseXI	GCAGC	3 cut(s)	352, 373, 376
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	305, 630
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	4 cut(s)	217, 548, 692, 719
BsiHKCI	CYCGRG	2 cut(s)	827, 934
BsiSI	CCGG	5 cut(s)	582, 747, 801, 828, 935
BslI	CCNNNNNNNGG	3 cut(s)	989, 990, 1052
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	305, 630
BsoBI	CYCGRG	2 cut(s)	827, 934
Bsp1286I	GDGCHC	4 cut(s)	217, 548, 692, 719
Bsp143I	GATC	2 cut(s)	110, 395
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	3 cut(s)	199, 202, 678
BspANI	GGCC	2 cut(s)	305, 630
BspCNI	CTCAG	3 cut(s)	181, 403, 412
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	3 cut(s)	105, 118, 403
BsrI	ACTGG	6 cut(s)	353, 526, 668, 705, 732, 984
BssECI	CCNNGG	6 cut(s)	512, 826, 827, 880, 881, 934
BssMI	GATC	2 cut(s)	110, 395
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	302, 882
Bst4CI	ACNGT	2 cut(s)	287, 1007
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	189, 399, 411
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	35, 181
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	113, 398
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	110, 395
BstNI	CCWGG	2 cut(s)	302, 882
BstNSI	RCATGY	5 cut(s)	209, 754, 781, 808, 1080
BstSCI	CCNGG	6 cut(s)	300, 826, 827, 880, 933, 934
BstSFI	CTRYAG	3 cut(s)	390, 549, 609
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	352, 373, 376
BstV2I	GAAGAC	2 cut(s)	288, 664
BstX2I	RGATCY	2 cut(s)	110, 395
BstYI	RGATCY	2 cut(s)	110, 395
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	305, 630
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	512
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	35, 181
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	304
Cfr9I	CCCGGG	2 cut(s)	827, 934
ClaI	ATCGAT	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	242, 519
CviAII	CATG	8 cut(s)	206, 308, 322, 513, 751, 778, 805, 1077
CviQI	GTAC	2 cut(s)	242, 519
DdeI	CTNAG	3 cut(s)	189, 399, 411
DpnI	GATC	2 cut(s)	112, 397
DpnII	GATC	2 cut(s)	110, 395
EaeI	YGGCCR	1 cut(s)	628
Ecl136II	GAGCTC	4 cut(s)	215, 546, 690, 717
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	4 cut(s)	217, 548, 692, 719
Eco53kI	GAGCTC	4 cut(s)	215, 546, 690, 717
Eco88I	CYCGRG	2 cut(s)	827, 934
EcoICRI	GAGCTC	4 cut(s)	215, 546, 690, 717
EcoRII	CCWGG	2 cut(s)	300, 880
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	4 cut(s)	217, 548, 692, 719
ErhI	CCWWGG	1 cut(s)	512
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	8 cut(s)	209, 311, 325, 516, 754, 781, 808, 1080
FatI	CATG	8 cut(s)	205, 307, 321, 512, 750, 777, 804, 1076
Fnu4HI	GCNGC	5 cut(s)	200, 203, 366, 387, 390
FokI	GGATG	2 cut(s)	42, 188
FriOI	GRGCYC	4 cut(s)	217, 548, 692, 719
Fsp4HI	GCNGC	5 cut(s)	200, 203, 366, 387, 390
GluI	GCNGC	5 cut(s)	200, 203, 366, 387, 390
GsuI	CTGGAG	5 cut(s)	543, 651, 676, 703, 757
HaeIII	GGCC	2 cut(s)	305, 630
HapII	CCGG	5 cut(s)	582, 747, 801, 828, 935
Hin1II	CATG	8 cut(s)	209, 311, 325, 516, 754, 781, 808, 1080
HincII	GTYRAC	1 cut(s)	1037
HindII	GTYRAC	1 cut(s)	1037
HinfI	GANTC	5 cut(s)	137, 191, 425, 431, 969
HpaII	CCGG	5 cut(s)	582, 747, 801, 828, 935
Hpy166II	GTNNAC	3 cut(s)	346, 435, 1037
Hpy188I	TCNGA	7 cut(s)	90, 402, 430, 687, 714, 741, 868
Hpy188III	TCNNGA	4 cut(s)	146, 293, 532, 642
Hpy8I	GTNNAC	3 cut(s)	346, 435, 1037
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	287, 1007
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	6 cut(s)	35, 82, 233, 368, 392, 491
HpyF3I	CTNAG	3 cut(s)	189, 399, 411
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	8 cut(s)	209, 311, 325, 516, 754, 781, 808, 1080
Kzo9I	GATC	2 cut(s)	110, 395
LmnI	GCTCC	6 cut(s)	514, 581, 695, 722, 776, 803
Lsp1109I	GCAGC	3 cut(s)	352, 373, 376
LweI	GCATC	2 cut(s)	39, 69
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	3 cut(s)	335, 1070, 1079
MalI	GATC	2 cut(s)	112, 397
MboI	GATC	2 cut(s)	110, 395
MboII	GAAGA	6 cut(s)	132, 293, 427, 612, 664, 855
MflI	RGATCY	2 cut(s)	110, 395
MhlI	GDGCHC	4 cut(s)	217, 548, 692, 719
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	7 cut(s)	4, 60, 227, 273, 329, 455, 833
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	3 cut(s)	200, 434, 440
MmeI	TCCRAC	5 cut(s)	408, 588, 972, 999, 1026
MnlI	CCTC	2 cut(s)	124, 1053
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	2 cut(s)	74, 354
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	5 cut(s)	582, 747, 801, 828, 935
MspR9I	CCNGG	6 cut(s)	302, 828, 829, 882, 935, 936
MvaI	CCWGG	2 cut(s)	302, 882
MvnI	CGCG	1 cut(s)	199
NciI	CCSGG	4 cut(s)	828, 829, 935, 936
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	2 cut(s)	110, 395
NlaIII	CATG	8 cut(s)	209, 311, 325, 516, 754, 781, 808, 1080
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	335, 1079
NspI	RCATGY	5 cut(s)	209, 754, 781, 808, 1080
OliI	CACNNNNGTG	1 cut(s)	584
PasI	CCCWGGG	1 cut(s)	881
PfeI	GAWTC	2 cut(s)	137, 969
PkrI	GCNGC	5 cut(s)	201, 204, 367, 388, 391
PleI	GAGTC	3 cut(s)	199, 433, 439
PpsI	GAGTC	3 cut(s)	199, 433, 439
PshBI	ATTAAT	1 cut(s)	74
Psp124BI	GAGCTC	4 cut(s)	217, 548, 692, 719
Psp6I	CCWGG	2 cut(s)	300, 880
PspGI	CCWGG	2 cut(s)	300, 880
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	304
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	110, 395
RsaI	GTAC	2 cut(s)	243, 520
RsaNI	GTAC	2 cut(s)	242, 519
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	4 cut(s)	217, 548, 692, 719
SaqAI	TTAA	2 cut(s)	74, 354
SatI	GCNGC	5 cut(s)	200, 203, 366, 387, 390
Sau3AI	GATC	2 cut(s)	110, 395
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	3 cut(s)	200, 434, 440
ScrFI	CCNGG	6 cut(s)	302, 828, 829, 882, 935, 936
SduI	GDGCHC	4 cut(s)	217, 548, 692, 719
SfaNI	GCATC	2 cut(s)	39, 69
SfcI	CTRYAG	3 cut(s)	390, 549, 609
SmaI	CCCGGG	2 cut(s)	829, 936
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	7 cut(s)	4, 60, 227, 273, 329, 455, 833
SsiI	CCGC	3 cut(s)	199, 202, 678
SstI	GAGCTC	4 cut(s)	217, 548, 692, 719
StyD4I	CCNGG	6 cut(s)	300, 826, 827, 880, 933, 934
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	2 cut(s)	287, 1007
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	47, 292, 533
TasI	AATT	7 cut(s)	4, 60, 227, 273, 329, 455, 833
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	2 cut(s)	202, 205
TfiI	GAWTC	2 cut(s)	137, 969
Tru1I	TTAA	2 cut(s)	74, 354
Tru9I	TTAA	2 cut(s)	74, 354
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	335, 1079
TseI	GCWGC	3 cut(s)	365, 386, 389
Tsp45I	GTSAC	2 cut(s)	335, 1079
TspDTI	ATGAA	5 cut(s)	17, 116, 159, 192, 285
TspMI	CCCGGG	2 cut(s)	827, 934
TspRI	CASTG	1 cut(s)	340
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	4 cut(s)	4, 273, 329, 455
XceI	RCATGY	5 cut(s)	209, 754, 781, 808, 1080
XmaI	CCCGGG	2 cut(s)	827, 934
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.