AT4G12690

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011855
Physical Location & Seq
Forward (+)
7480556 .. 7482150
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12690.2

Sequence Viewer

Length: 858 bp
ATGTCTTTGAGGTCAGAATCTTCAACGGCAGAGAAGATAACAGAGGATCCGGTGACGTATAAGACAGCACAAAGCAGCGTGACGTGCATCTACCAAGCACATATGGTTGGATTCTGGAGAAACGTTAGGGTTCTATGGTCTAAAAATCTCATGAACCATTCCTTAACCGTGATGGTCACTAGCGTACAAGGCGATATGAATTACTGTTGCAAGGTTGATCTTAAGCCATGGCACTTTTGGTACAAGAAAGGTTACAAATCGTTTGAGGTCGAAGGAAACCAAGTAGATGTCTATTGGGATTTTAGGTCTGCGAAATTCAACGGCGGGCCTGAGCCGAGCTCCGATTTTTACGTGGCGCTTGTATCCGAGGAAGAGGTTGTTTTGTTGTTGGGTGATCACAAGAAGAAAGCTTTTAAGAGGACTAAATCTAGACCTTCCTTGGTTGACGCTGCCTTGTTCTACAAGAAAGAGAATGTGTTTGGGAAGAAGATTTTTTCGACTAGGGCTAAGTTCCATGATAGGAAGAGAGAGCATGAGATCGTAGTGGAGAGCTCTACCGGGGCGAAAGAACCAGAGATGTGGATTAGCGTAGATGGGATCGTTTTGGTTCAGGTGAGAAATCTGCAGTGGAAATTTAGAGGGAACCAGACTGTTTTGGTTGATAAAGAACCTGTTCAAGTGTTTTGGGATGTGTATGATTGGTTGTTCAGCACCCCCGGTACGGGGCACGGCTTGTTCATCTTTAAACCGGAGAGCGGTGAAAGCGAAACGAGCAACGAAACCAAGAATTGCAGTGCTTCTTCTTCTTCTTCTTCGTCGGAGTTTTGTCTCTTTCTTTATGCTTGGAAATTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

285

Amino Acids

32.79

Weight (kDa)

8.15

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 23 - 283 9e-109 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04220 AT4G12690 AT4G12690 AT5G48270
fragaria_vesca FvH4_6g40240
malus_domestica MD09G1133700.v1.1 MD17G1121100.v1.1 MD17G1122500.v1.1
prunus_persica Prupe.3G192800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155261
rosa_laevigata RLG00000020831
rosa_multiflora Rmu_sc0012066.1_g000008
rosa_roxburghii Rroxscaffold_2G00093820
rosa_rugosa Rorug02G0446400
rosa_samantha Rh2AG512900 Rh2BG523500 Rh2CG497900 Rh2DG533200
rosa_wichuraiana Rw2G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 756
AciI CCGC 2 cut(s) 324, 756
AclI AACGTT 1 cut(s) 123
AclWI GGATC 3 cut(s) 41, 54, 605
AcsI RAATTY 2 cut(s) 314, 632
AfaI GTAC 3 cut(s) 186, 242, 721
AfiI CCNNNNNNNGG 4 cut(s) 721, 722, 723, 755
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 3 cut(s) 24, 319, 677
AjiI CACGTC 1 cut(s) 84
AluBI AGCT 3 cut(s) 339, 410, 552
AluI AGCT 3 cut(s) 339, 410, 552
Alw21I GWGCWC 2 cut(s) 341, 554
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 3 cut(s) 41, 54, 605
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 75, 449
ApoI RAATTY 2 cut(s) 314, 632
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 2 cut(s) 559, 717
AsuHPI GGTGA 4 cut(s) 64, 404, 625, 770
BaeGI GKGCMC 1 cut(s) 729
BamHI GGATCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 341, 554
Bbv12I GWGCWC 2 cut(s) 341, 554
BbvI GCAGC 2 cut(s) 87, 436
BccI CCATC 2 cut(s) 166, 587
BceAI ACGGC 3 cut(s) 42, 337, 745
BciVI GTATCC 1 cut(s) 373
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 2 cut(s) 559, 717
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 3 cut(s) 180, 429, 501
BfmI CTRYAG 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 359
BfrI CTTAAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 2 cut(s) 76, 450
BlsI GCNGC 2 cut(s) 77, 451
Bme1390I CCNGG 2 cut(s) 559, 717
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 48, 644
BmrFI CCNGG 2 cut(s) 559, 717
BmsI GCATC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpmI CTGGAG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 559, 717
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 227, 366, 438, 558, 715
BsaWI WCCGGW 2 cut(s) 49, 748
Bsc4I CCNNNNNNNGG 4 cut(s) 721, 722, 723, 755
BseDI CCNNGG 5 cut(s) 227, 366, 438, 558, 715
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 4 cut(s) 721, 722, 723, 755
BseMII CTCAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 2 cut(s) 87, 436
BshFI GGCC 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 341, 554
BsiSI CCGG 4 cut(s) 50, 558, 717, 749
BslI CCNNNNNNNGG 4 cut(s) 721, 722, 723, 755
BsmAI GTCTC 1 cut(s) 833
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 3 cut(s) 341, 554, 729
Bsp143I GATC 5 cut(s) 46, 217, 394, 537, 597
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 2 cut(s) 324, 756
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 48, 644
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 3 cut(s) 41, 54, 605
BspTI CTTAAG 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 756
BssECI CCNNGG 5 cut(s) 227, 366, 438, 558, 715
BssMI GATC 5 cut(s) 46, 217, 394, 537, 597
BssT1I CCWWGG 2 cut(s) 227, 438
Bst4CI ACNGT 3 cut(s) 169, 206, 652
Bst6I CTCTTC 2 cut(s) 366, 518
BstAFI CTTAAG 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 330, 507
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 694
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 5 cut(s) 49, 220, 397, 540, 600
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 5 cut(s) 46, 217, 394, 537, 597
BstMWI GCNNNNNNNGC 4 cut(s) 84, 189, 762, 771
BstSCI CCNGG 2 cut(s) 557, 715
BstSFI CTRYAG 1 cut(s) 623
BstSLI GKGCMC 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 87, 436
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 579
BstYI RGATCY 1 cut(s) 46
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 227
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 694
BtsI GCAGTG 2 cut(s) 632, 799
BtsIMutI CAGTG 2 cut(s) 632, 799
Cac8I GCNNGC 1 cut(s) 326
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 185, 241, 720
CviAII CATG 4 cut(s) 151, 228, 515, 533
CviJI RGCY 8 cut(s) 226, 328, 334, 339, 410, 506, 552, 732
CviKI_1 RGCY 8 cut(s) 226, 328, 334, 339, 410, 506, 552, 732
CviQI GTAC 3 cut(s) 185, 241, 720
DdeI CTNAG 2 cut(s) 330, 507
DpnI GATC 5 cut(s) 48, 219, 396, 539, 599
DpnII GATC 5 cut(s) 46, 217, 394, 537, 597
DraI TTTAAA 1 cut(s) 745
Eam1104I CTCTTC 2 cut(s) 366, 518
EarI CTCTTC 2 cut(s) 366, 518
Ecl136II GAGCTC 2 cut(s) 339, 552
Eco130I CCWWGG 2 cut(s) 227, 438
Eco24I GRGCYC 2 cut(s) 341, 554
Eco53kI GAGCTC 2 cut(s) 339, 552
EcoICRI GAGCTC 2 cut(s) 339, 552
EcoT14I CCWWGG 2 cut(s) 227, 438
EcoT38I GRGCYC 2 cut(s) 341, 554
ErhI CCWWGG 2 cut(s) 227, 438
FaeI CATG 4 cut(s) 154, 231, 518, 536
FatI CATG 4 cut(s) 150, 227, 514, 532
FauI CCCGC 1 cut(s) 317
FauNDI CATATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 76, 450
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 2 cut(s) 341, 554
Fsp4HI GCNGC 2 cut(s) 76, 450
FspBI CTAG 3 cut(s) 180, 429, 501
GlaI GCGC 1 cut(s) 357
GluI GCNGC 2 cut(s) 76, 450
GsuI CTGGAG 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 1 cut(s) 328
HapII CCGG 4 cut(s) 50, 558, 717, 749
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 358
Hin1II CATG 4 cut(s) 154, 231, 518, 536
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 2 cut(s) 17, 111
HpaII CCGG 4 cut(s) 50, 558, 717, 749
HphI GGTGA 4 cut(s) 64, 404, 625, 770
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 4 cut(s) 16, 343, 367, 820
Hpy188III TCNNGA 3 cut(s) 115, 151, 429
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 2 cut(s) 266, 444
HpyCH4III ACNGT 3 cut(s) 169, 206, 652
HpyCH4IV ACGT 4 cut(s) 56, 83, 123, 351
HpyCH4V TGCA 4 cut(s) 87, 210, 625, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 189, 762, 771
HpyF3I CTNAG 2 cut(s) 330, 507
HpySE526I ACGT 4 cut(s) 56, 83, 123, 351
Hsp92II CATG 4 cut(s) 154, 231, 518, 536
HspAI GCGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 46, 217, 394, 537, 597
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 2 cut(s) 87, 436
LweI GCATC 1 cut(s) 96
MaeI CTAG 3 cut(s) 180, 429, 501
MaeII ACGT 4 cut(s) 56, 83, 123, 351
MaeIII GTNAC 4 cut(s) 52, 79, 175, 251
MalI GATC 5 cut(s) 48, 219, 396, 539, 599
MbiI CCGCTC 1 cut(s) 756
MboI GATC 5 cut(s) 46, 217, 394, 537, 597
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 341, 554, 729
MluCI AATT 5 cut(s) 199, 314, 632, 787, 848
MmeI TCCRAC 2 cut(s) 88, 798
MnlI CCTC 7 cut(s) 3, 37, 259, 361, 367, 411, 632
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 4 cut(s) 164, 222, 414, 744
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 4 cut(s) 50, 558, 717, 749
MspR9I CCNGG 2 cut(s) 559, 717
MwoI GCNNNNNNNGC 4 cut(s) 84, 189, 762, 771
NciI CCSGG 2 cut(s) 559, 717
NcoI CCATGG 1 cut(s) 227
NdeI CATATG 1 cut(s) 102
NdeII GATC 5 cut(s) 46, 217, 394, 537, 597
NlaIII CATG 4 cut(s) 154, 231, 518, 536
NlaIV GGNNCC 2 cut(s) 48, 644
NmeAIII GCCGAG 1 cut(s) 360
NmuCI GTSAC 3 cut(s) 52, 79, 175
PagI TCATGA 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 17, 111
PkrI GCNGC 2 cut(s) 77, 451
Ppu21I YACGTR 1 cut(s) 352
Psp124BI GAGCTC 2 cut(s) 341, 554
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 48, 644
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 3 cut(s) 186, 242, 721
RsaNI GTAC 3 cut(s) 185, 241, 720
SacI GAGCTC 2 cut(s) 341, 554
SaqAI TTAA 4 cut(s) 164, 222, 414, 744
SatI GCNGC 2 cut(s) 76, 450
Sau3AI GATC 5 cut(s) 46, 217, 394, 537, 597
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 559, 717
SduI GDGCHC 3 cut(s) 341, 554, 729
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 5 cut(s) 199, 314, 632, 787, 848
SsiI CCGC 2 cut(s) 324, 756
SspMI CTAG 3 cut(s) 180, 429, 501
SstI GAGCTC 2 cut(s) 341, 554
StyD4I CCNGG 2 cut(s) 557, 715
StyI CCWWGG 2 cut(s) 227, 438
TaaI ACNGT 3 cut(s) 169, 206, 652
TaiI ACGT 4 cut(s) 59, 86, 126, 354
TaqI TCGA 2 cut(s) 270, 497
TasI AATT 5 cut(s) 199, 314, 632, 787, 848
TfiI GAWTC 2 cut(s) 17, 111
Tru1I TTAA 4 cut(s) 164, 222, 414, 744
Tru9I TTAA 4 cut(s) 164, 222, 414, 744
TscAI CASTG 2 cut(s) 632, 799
TseFI GTSAC 3 cut(s) 52, 79, 175
TseI GCWGC 2 cut(s) 75, 449
Tsp45I GTSAC 3 cut(s) 52, 79, 175
TspDTI ATGAA 3 cut(s) 167, 212, 727
TspRI CASTG 2 cut(s) 632, 799
Vha464I CTTAAG 1 cut(s) 221
XapI RAATTY 2 cut(s) 314, 632
XbaI TCTAGA 1 cut(s) 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 3 cut(s) 180, 429, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.