RchiOBHm_Chr2g0155261

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011855
Physical Location & Seq
Reverse (-)
72219130 .. 72220071
942 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52416

Sequence Viewer

Length: 939 bp
ATGCAGGCTTTTAGTCGTTCTATGCGGGGACATTCGGTACATGAGCCTCCCCCATTAGCAGAGAAGCTCACCGAAGACCCCGTGACATCGAAAACCGCACAAAGCACGGTGACATGCGTCTACCTTGCCAACATTGCAATGAATTGGCGGAAGGTCACGGTCATTTGGTGCAAGAATCTCATGAACCATTCCCTAAGCATAAGGACTGATAGTCTAGAAGGCGATTTTCATATAACTTGCAAAATCGACCTCAAGCCGTGGCATTTTTGGAGCAAAAAAGGGTACAAGTCATTCGAGGTTGAAGGGAATCATGTTGAAGTCTATTGGGACCTTCGATCTGCTAAATTCGTAGGAGGTCCAGAACCGAATCAGGACTTCTACGTTGCCCTTGTTTGCGATGAGGAAGTTGTGTTACTCTTGGGAGACATGAAGAAAAAGGCTTACAAGAGAACCAAATCAAGGCCTTCAATGGTTGAGGCCGTTATGTACTACAAAAAAGAAAACGTGTTTGCCAAGAAAAGCTTTGCCACTAGGGTGAGATTCGACGAAAAGAGGAAAGAGCATGACATTGTAGTGGAGAGCTCAACTTCCGGGCTCAAAGACCCCGAAATGTGGATCAGCATAGACGGGATTGTGTTGGTTCATGTCAAGAATTTGCAATGGAAATTCAGAGGGAACCAGACTGTGATGGTGAACATGTTACCTGTCCAGGTTTTTTGGGATGTTCATGATTGGCTTTTCAGTAATCCAGGAACAGGACATGGTCTGTTTATTTTCAAGCCCGGGGCACCTGATTCGGAGAGCGATTACGACAGAGAAGGAGGCGAGTTCTGTGGAGACAGTGACAATAGCATTAGCAGTGCCTATTATTCAACTCAGAGTCTTAACACAACAGCTTCTGACTTCTGCTTGTTTCTTCATGCTTATAAGCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

312

Amino Acids

35.77

Weight (kDa)

6.6

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 33 - 310 9.8e-109 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04220 AT4G12690 AT4G12690 AT5G48270
fragaria_vesca FvH4_6g40240
malus_domestica MD09G1133700.v1.1 MD17G1121100.v1.1 MD17G1122500.v1.1
prunus_persica Prupe.3G192800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155261
rosa_laevigata RLG00000020831
rosa_multiflora Rmu_sc0012066.1_g000008
rosa_roxburghii Rroxscaffold_2G00093820
rosa_rugosa Rorug02G0446400
rosa_samantha Rh2AG512900 Rh2BG523500 Rh2CG497900 Rh2DG533200
rosa_wichuraiana Rw2G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 787
AccI GTMKAC 1 cut(s) 120
AciI CCGC 3 cut(s) 25, 96, 148
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 3 cut(s) 344, 652, 665
AfaI GTAC 3 cut(s) 39, 284, 488
AfiI CCNNNNNNNGG 3 cut(s) 459, 612, 755
AflIII ACRYGT 2 cut(s) 504, 696
AgsI TTSAA 6 cut(s) 302, 317, 468, 778, 873, 935
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 2 cut(s) 708, 748
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 5 cut(s) 67, 522, 582, 896, 931
AluI AGCT 5 cut(s) 67, 522, 582, 896, 931
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 2 cut(s) 417, 831
AlwI GGATC 1 cut(s) 623
AlwNI CAGNNNCTG 1 cut(s) 899
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 461, 477
ApoI RAATTY 3 cut(s) 344, 652, 665
AspS9I GGNCC 2 cut(s) 328, 356
AsuC2I CCSGG 3 cut(s) 592, 783, 784
AsuHPI GGTGA 4 cut(s) 61, 121, 547, 703
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 2 cut(s) 328, 356
BaeGI GKGCMC 1 cut(s) 790
BanI GGYRCC 1 cut(s) 787
BanII GRGCYC 2 cut(s) 584, 597
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 584
BccI CCATC 1 cut(s) 682
BceAI ACGGC 2 cut(s) 241, 464
BcgI CGANNNNNNTGC 2 cut(s) 777, 811
BciT130I CCWGG 2 cut(s) 710, 750
BcnI CCSGG 3 cut(s) 592, 783, 784
BcoDI GTCTC 2 cut(s) 417, 831
BfaI CTAG 2 cut(s) 215, 531
Bme1390I CCNGG 5 cut(s) 592, 710, 750, 783, 784
Bme18I GGWCC 2 cut(s) 328, 356
BmeRI GACNNNNNGTC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 328, 356
BmiI GGNNCC 3 cut(s) 329, 677, 789
BmrFI CCNGG 5 cut(s) 592, 710, 750, 783, 784
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 3 cut(s) 592, 783, 784
BsaJI CCNNGG 3 cut(s) 257, 782, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 612, 755
Bse3DI GCAATG 3 cut(s) 132, 144, 665
BseBI CCWGG 2 cut(s) 710, 750
BseDI CCNNGG 3 cut(s) 257, 782, 783
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 3 cut(s) 459, 612, 755
BseMI GCAATG 3 cut(s) 132, 144, 665
BseMII CTCAG 1 cut(s) 890
BseSI GKGCMC 1 cut(s) 790
BshFI GGCC 2 cut(s) 463, 479
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 2 cut(s) 591, 783
BslFI GGGAC 2 cut(s) 42, 341
BslI CCNNNNNNNGG 3 cut(s) 459, 612, 755
BsmAI GTCTC 2 cut(s) 417, 831
BsmFI GGGAC 2 cut(s) 42, 341
BsnI GGCC 2 cut(s) 463, 479
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 3 cut(s) 584, 597, 790
Bsp143I GATC 2 cut(s) 335, 615
BspACI CCGC 3 cut(s) 25, 96, 148
BspANI GGCC 2 cut(s) 463, 479
BspCNI CTCAG 1 cut(s) 889
BspHI TCATGA 2 cut(s) 180, 727
BspLI GGNNCC 3 cut(s) 329, 677, 789
BspPI GGATC 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 787
BsrDI GCAATG 3 cut(s) 132, 144, 665
BssECI CCNNGG 3 cut(s) 257, 782, 783
BssMI GATC 2 cut(s) 335, 615
Bst2UI CCWGG 2 cut(s) 710, 750
Bst4CI ACNGT 4 cut(s) 109, 160, 685, 842
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 194, 876
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 727
BstKTI GATC 2 cut(s) 338, 618
BstMAI GTCTC 2 cut(s) 417, 831
BstMBI GATC 2 cut(s) 335, 615
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 2 cut(s) 710, 750
BstNSI RCATGY 2 cut(s) 117, 700
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 5 cut(s) 590, 708, 748, 781, 782
BstSLI GKGCMC 1 cut(s) 790
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 463, 479
BtgI CCRYGG 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 2 cut(s) 847, 865
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 2 cut(s) 180, 727
Cfr13I GGNCC 2 cut(s) 328, 356
Cfr9I CCCGGG 1 cut(s) 782
CseI GACGC 1 cut(s) 106
Csp6I GTAC 3 cut(s) 38, 283, 487
CviQI GTAC 3 cut(s) 38, 283, 487
DdeI CTNAG 2 cut(s) 194, 876
DpnI GATC 2 cut(s) 337, 617
DpnII GATC 2 cut(s) 335, 615
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 582
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 584, 597
Eco47I GGWCC 2 cut(s) 328, 356
Eco53kI GAGCTC 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 708, 748
EcoT38I GRGCYC 2 cut(s) 584, 597
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 2 cut(s) 42, 341
FauI CCCGC 1 cut(s) 18
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 2 cut(s) 584, 597
FspBI CTAG 2 cut(s) 215, 531
HaeIII GGCC 2 cut(s) 463, 479
HapII CCGG 2 cut(s) 591, 783
HgaI GACGC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 520, 929
HinfI GANTC 6 cut(s) 175, 307, 367, 540, 794, 880
HpaII CCGG 2 cut(s) 591, 783
HphI GGTGA 4 cut(s) 61, 121, 547, 703
Hpy166II GTNNAC 2 cut(s) 121, 694
Hpy188I TCNGA 4 cut(s) 671, 799, 879, 901
Hpy188III TCNNGA 6 cut(s) 181, 215, 359, 371, 649, 728
Hpy8I GTNNAC 2 cut(s) 121, 694
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 6 cut(s) 145, 212, 296, 341, 474, 812
HpyCH4III ACNGT 4 cut(s) 109, 160, 685, 842
HpyCH4IV ACGT 2 cut(s) 381, 504
HpyCH4V TGCA 5 cut(s) 4, 137, 171, 240, 658
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 194, 876
HpySE526I ACGT 2 cut(s) 381, 504
Kzo9I GATC 2 cut(s) 335, 615
LmnI GCTCC 1 cut(s) 270
MaeI CTAG 2 cut(s) 215, 531
MaeII ACGT 2 cut(s) 381, 504
MaeIII GTNAC 6 cut(s) 82, 109, 154, 411, 699, 842
MalI GATC 2 cut(s) 337, 617
MboI GATC 2 cut(s) 335, 615
MboII GAAGA 3 cut(s) 86, 442, 908
MhlI GDGCHC 3 cut(s) 584, 597, 790
MluCI AATT 4 cut(s) 142, 344, 652, 665
MlyI GAGTC 1 cut(s) 889
MnlI CCTC 9 cut(s) 57, 260, 289, 347, 394, 469, 546, 665, 815
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 3 cut(s) 137, 533, 572
MspI CCGG 2 cut(s) 591, 783
MspR9I CCNGG 5 cut(s) 592, 710, 750, 783, 784
MvaI CCWGG 2 cut(s) 710, 750
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 3 cut(s) 592, 783, 784
NdeII GATC 2 cut(s) 335, 615
NlaIV GGNNCC 3 cut(s) 329, 677, 789
NmuCI GTSAC 4 cut(s) 82, 109, 154, 842
NspI RCATGY 2 cut(s) 117, 700
OliI CACNNNNGTG 1 cut(s) 533
PagI TCATGA 2 cut(s) 180, 727
PceI AGGCCT 1 cut(s) 463
PciI ACATGT 1 cut(s) 696
PfeI GAWTC 5 cut(s) 175, 307, 367, 540, 794
PflFI GACNNNGTC 1 cut(s) 762
PfoI TCCNGGA 1 cut(s) 748
PleI GAGTC 1 cut(s) 888
PpsI GAGTC 1 cut(s) 888
PpuMI RGGWCCY 1 cut(s) 328
PscI ACATGT 1 cut(s) 696
PshAI GACNNNNGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 927
Psp124BI GAGCTC 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 708, 748
PspGI CCWGG 2 cut(s) 708, 748
PspN4I GGNNCC 3 cut(s) 329, 677, 789
PspPI GGNCC 2 cut(s) 328, 356
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 899
PsyI GACNNNGTC 1 cut(s) 762
RsaI GTAC 3 cut(s) 39, 284, 488
RsaNI GTAC 3 cut(s) 38, 283, 487
RseI CAYNNNNRTG 3 cut(s) 137, 533, 572
SacI GAGCTC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 885
Sau3AI GATC 2 cut(s) 335, 615
Sau96I GGNCC 2 cut(s) 328, 356
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 5 cut(s) 592, 710, 750, 783, 784
SduI GDGCHC 3 cut(s) 584, 597, 790
SinI GGWCC 2 cut(s) 328, 356
SmaI CCCGGG 1 cut(s) 784
SmiMI CAYNNNNRTG 3 cut(s) 137, 533, 572
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 142, 344, 652, 665
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 3 cut(s) 25, 96, 148
SspMI CTAG 2 cut(s) 215, 531
SstI GAGCTC 1 cut(s) 584
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 5 cut(s) 590, 708, 748, 781, 782
TaaI ACNGT 4 cut(s) 109, 160, 685, 842
TaiI ACGT 2 cut(s) 384, 507
TaqI TCGA 5 cut(s) 89, 246, 294, 334, 543
TasI AATT 4 cut(s) 142, 344, 652, 665
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 5 cut(s) 175, 307, 367, 540, 794
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 2 cut(s) 847, 865
TseFI GTSAC 4 cut(s) 82, 109, 154, 842
Tsp45I GTSAC 4 cut(s) 82, 109, 154, 842
TspDTI ATGAA 7 cut(s) 155, 197, 218, 443, 632, 716, 908
TspMI CCCGGG 1 cut(s) 782
TspRI CASTG 2 cut(s) 847, 865
Tth111I GACNNNGTC 1 cut(s) 762
VpaK11BI GGWCC 2 cut(s) 328, 356
XapI RAATTY 3 cut(s) 344, 652, 665
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 2 cut(s) 117, 700
XmaI CCCGGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 215, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.